Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35761 * 120.00298 * 2 1 4 4 C 1.41288 * 119.99377 * 5.65728 * 3 2 1 5 5 O 1.21710 * 120.00556 * 354.73479 * 4 3 2 6 6 O 1.35000 * 119.99773 * 174.72854 * 4 3 2 7 7 C 1.42899 * 117.00379 * 179.97438 * 6 4 3 8 8 H 1.09005 * 109.47075 * 330.00882 * 7 6 4 9 9 C 1.50694 * 109.47617 * 210.00540 * 7 6 4 10 10 H 1.08002 * 119.99709 * 359.97438 * 9 7 6 11 11 C 1.37874 * 120.00353 * 180.02562 * 9 7 6 12 12 N 1.31517 * 119.99770 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00154 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47142 * 60.00444 * 13 11 9 15 15 H 1.48500 * 109.47196 * 179.97438 * 13 11 9 16 16 H 1.48493 * 109.47506 * 299.99900 * 13 11 9 17 17 C 1.52999 * 109.46836 * 90.00183 * 7 6 4 18 18 C 1.52999 * 117.50003 * 231.25577 * 17 7 6 19 19 C 1.53001 * 117.50286 * 299.91328 * 17 7 6 20 20 C 1.41534 * 120.00225 * 180.02562 * 2 1 3 21 21 C 1.38000 * 126.10432 * 294.71352 * 20 2 1 22 22 C 1.40287 * 106.52384 * 179.88135 * 21 20 2 23 23 C 1.35180 * 107.20665 * 0.37974 * 22 21 20 24 24 O 1.33999 * 109.04743 * 359.76191 * 23 22 21 25 25 H 1.08993 * 109.47175 * 58.29290 * 1 2 3 26 26 H 1.08998 * 109.47070 * 178.29729 * 1 2 3 27 27 H 1.09007 * 109.46719 * 298.28634 * 1 2 3 28 28 H 1.07993 * 120.00228 * 185.66009 * 3 2 1 29 29 H 0.97003 * 119.99772 * 180.02562 * 12 11 9 30 30 H 1.09003 * 115.54735 * 85.58578 * 17 7 6 31 31 H 1.09006 * 117.50150 * 215.00577 * 18 17 7 32 32 H 1.09003 * 117.49855 * 0.02562 * 18 17 7 33 33 H 1.09001 * 117.49679 * 359.97438 * 19 17 7 34 34 H 1.09001 * 117.49933 * 144.99352 * 19 17 7 35 35 H 1.07998 * 126.74288 * 0.02562 * 21 20 2 36 36 H 1.07997 * 126.39635 * 180.16102 * 22 21 20 37 37 H 1.08006 * 125.47697 * 179.73857 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1858 1.1757 0.0000 4 6 1.4845 2.3963 0.1206 5 8 0.2674 2.4007 0.1281 6 8 2.1644 3.5576 0.2278 7 6 1.3912 4.7536 0.3459 8 1 0.4434 4.6266 -0.1773 9 6 2.1503 5.9047 -0.2621 10 1 3.1258 5.7396 -0.6950 11 6 1.5999 7.1688 -0.2647 12 7 0.4125 7.3701 0.2638 13 14 2.5411 8.5958 -1.0177 14 1 2.8015 8.3150 -2.4525 15 1 1.7376 9.8385 -0.8950 16 1 3.8323 8.7683 -0.3049 17 6 1.1229 5.0434 1.8240 18 6 -0.3259 5.3038 2.2413 19 6 0.3562 3.9878 2.6232 20 6 2.2147 -1.2257 -0.0005 21 6 2.2176 -2.1634 1.0119 22 6 3.0466 -3.2109 0.5832 23 6 3.5131 -2.8763 -0.6407 24 8 3.0117 -1.6834 -0.9887 25 1 -0.3633 0.5401 -0.8742 26 1 -0.3633 -1.0272 -0.0305 27 1 -0.3633 0.4870 0.9050 28 1 3.2618 1.1780 -0.0922 29 1 0.0251 8.2594 0.2616 30 1 1.9038 5.5989 2.3434 31 1 -0.4982 6.0306 3.0351 32 1 -1.0880 5.2681 1.4627 33 1 0.0425 3.0869 2.0958 34 1 0.6328 3.8487 3.6683 35 1 1.6844 -2.1039 1.9492 36 1 3.2728 -4.1140 1.1303 37 1 4.1826 -3.4742 -1.2413 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977841.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = -41.816126 kcal Electronic energy + Delta-G solvation = -21003.157306 eV Core-core repulsion = 17713.318497 eV Total energy + Delta-G solvation = -3289.838809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.50312 -41.60974 -38.68678 -36.95232 -36.04199 -34.69355 -33.90839 -30.70432 -29.69303 -28.95156 -25.59163 -24.48125 -23.05535 -22.61121 -22.28851 -21.16533 -20.34757 -18.84971 -18.72150 -17.79531 -17.24231 -17.15703 -16.79802 -16.25850 -15.98711 -15.62048 -14.95875 -14.56668 -14.26890 -14.01026 -13.86600 -13.64192 -13.44735 -13.38001 -13.16406 -12.95739 -12.84885 -12.76489 -12.25336 -12.15414 -11.77282 -11.32430 -11.06215 -10.94835 -10.91451 -10.62726 -10.56090 -10.38710 -9.29809 -8.20218 -6.37114 -0.44171 0.66841 1.42262 1.45142 1.52647 1.64724 1.90159 2.05741 2.31738 2.54183 3.06974 3.27569 3.76705 3.78066 4.04422 4.12424 4.19243 4.21135 4.33102 4.38844 4.48289 4.66013 4.70157 4.81004 4.82834 4.91887 4.94345 5.05973 5.12352 5.14381 5.28997 5.32047 5.43856 5.51764 5.56530 5.58428 5.87724 6.07648 6.17637 6.65270 7.03637 7.33161 8.85761 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.028141 B = 0.004096 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.734875 B = 6833.546118 C = 7439.364446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.066 3.934 3 C -0.193 4.193 4 C 0.482 3.518 5 O -0.529 6.529 6 O -0.358 6.358 7 C 0.252 3.748 8 H 0.009 0.991 9 C -0.560 4.560 10 H 0.060 0.940 11 C 0.027 3.973 12 N -0.893 5.893 13 Si 0.973 3.027 14 H -0.272 1.272 15 H -0.277 1.277 16 H -0.268 1.268 17 C -0.136 4.136 18 C -0.121 4.121 19 C -0.199 4.199 20 C -0.036 4.036 21 C -0.167 4.167 22 C -0.221 4.221 23 C -0.026 4.026 24 O -0.180 6.180 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.146 0.854 29 H 0.267 0.733 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.167 0.833 36 H 0.181 0.819 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -19.560 1.658 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.065 3.935 3 C -0.212 4.212 4 C 0.332 3.668 5 O -0.424 6.424 6 O -0.274 6.274 7 C 0.198 3.802 8 H 0.027 0.973 9 C -0.597 4.597 10 H 0.078 0.922 11 C -0.175 4.175 12 N -0.529 5.529 13 Si 0.797 3.203 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.193 1.193 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.236 4.236 20 C -0.085 4.085 21 C -0.186 4.186 22 C -0.240 4.240 23 C -0.094 4.094 24 O -0.076 6.076 25 H 0.097 0.903 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.164 0.836 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.184 0.816 36 H 0.198 0.802 37 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 3.381 -19.196 1.442 19.545 hybrid contribution 0.246 1.158 -0.261 1.212 sum 3.627 -18.038 1.181 18.437 Atomic orbital electron populations 1.21084 0.88100 1.03028 1.03983 1.19352 0.96338 0.88343 0.89480 1.21412 1.01788 0.89122 1.08852 1.20203 0.86556 0.86107 0.73938 1.90787 1.15734 1.88307 1.47580 1.86200 1.42874 1.16328 1.82033 1.19415 0.90666 0.78408 0.91662 0.97287 1.21181 1.04843 0.92877 1.40839 0.92188 1.25692 0.95970 1.00715 0.95171 1.70151 1.16232 1.23192 1.43288 0.85399 0.78545 0.77523 0.78872 1.19692 1.20180 1.19306 1.22438 0.95270 1.01851 0.95911 1.22263 0.95044 0.97210 1.01268 1.23286 1.06011 0.93851 1.00410 1.19556 1.00738 0.97140 0.91097 1.22519 1.02804 0.93194 1.00041 1.22122 1.02360 1.02145 0.97340 1.25167 1.00958 0.84886 0.98372 1.84187 1.49471 1.32782 1.41165 0.90340 0.89690 0.89716 0.83582 0.92396 0.90607 0.89466 0.91527 0.89189 0.88079 0.81564 0.80180 0.73982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.88 8.32 71.23 0.59 -2.29 16 2 C 0.07 1.89 5.78 -19.63 -0.11 1.77 16 3 C -0.19 -6.55 9.60 22.45 0.22 -6.34 16 4 C 0.48 20.81 6.84 68.57 0.47 21.28 16 5 O -0.53 -23.97 10.05 19.15 0.19 -23.77 16 6 O -0.36 -18.00 9.72 -59.18 -0.57 -18.58 16 7 C 0.25 13.98 2.21 29.85 0.07 14.05 16 8 H 0.01 0.58 6.87 -2.38 -0.02 0.56 16 9 C -0.56 -32.56 8.86 25.60 0.23 -32.33 16 10 H 0.06 3.47 7.81 -2.91 -0.02 3.44 16 11 C 0.03 1.49 5.30 84.65 0.45 1.94 16 12 N -0.89 -50.72 11.43 21.45 0.25 -50.48 16 13 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 17 C -0.14 -6.89 4.46 -10.79 -0.05 -6.94 16 18 C -0.12 -5.66 9.04 30.62 0.28 -5.39 16 19 C -0.20 -8.53 9.79 30.62 0.30 -8.23 16 20 C -0.04 -0.89 6.28 23.03 0.14 -0.75 16 21 C -0.17 -3.26 10.90 22.71 0.25 -3.01 16 22 C -0.22 -3.28 10.87 22.06 0.24 -3.04 16 23 C -0.03 -0.39 12.06 67.11 0.81 0.42 16 24 O -0.18 -4.20 10.67 -6.10 -0.07 -4.27 16 25 H 0.08 2.40 7.31 -2.39 -0.02 2.39 16 26 H 0.08 1.78 7.97 -2.39 -0.02 1.76 16 27 H 0.08 2.48 7.15 -2.38 -0.02 2.47 16 28 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.08 3.98 8.11 -2.39 -0.02 3.96 16 31 H 0.09 3.79 8.14 -2.38 -0.02 3.77 16 32 H 0.07 3.40 8.05 -2.39 -0.02 3.38 16 33 H 0.09 3.96 5.33 -2.39 -0.01 3.94 16 34 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 35 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 37 H 0.24 1.33 8.06 -2.91 -0.02 1.31 16 Total: -1.00 -67.52 318.46 6.77 -60.75 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.07 Total: 19.52 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.88 Total: -28.84 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.25 Total: -50.48 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.45 Total: -46.62 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -67.52 6.77 -60.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977841.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.931 kcal (2) G-P(sol) polarization free energy of solvation -67.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds