Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35754 * 120.00164 * 2 1 4 4 C 1.41296 * 120.00329 * 179.97438 * 3 2 1 5 5 O 1.21714 * 119.99472 * 0.02562 * 4 3 2 6 6 O 1.34996 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.42898 * 116.99826 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47259 * 30.00500 * 7 6 4 9 9 C 1.50699 * 109.46964 * 150.00288 * 7 6 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.52997 * 109.47319 * 270.00258 * 7 6 4 18 18 C 1.53001 * 117.50135 * 128.74714 * 17 7 6 19 19 C 1.53000 * 117.49905 * 60.08724 * 17 7 6 20 20 C 1.41537 * 120.00204 * 180.02562 * 2 1 3 21 21 C 1.38000 * 126.10402 * 294.71741 * 20 2 1 22 22 C 1.40281 * 106.52439 * 179.88617 * 21 20 2 23 23 C 1.35181 * 107.21034 * 0.37055 * 22 21 20 24 24 O 1.34011 * 109.04144 * 359.76977 * 23 22 21 25 25 H 1.09005 * 109.46993 * 89.99704 * 1 2 3 26 26 H 1.09002 * 109.46986 * 209.99415 * 1 2 3 27 27 H 1.08993 * 109.46965 * 329.99696 * 1 2 3 28 28 H 1.08003 * 119.99805 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 30 30 H 1.09006 * 115.55153 * 274.42093 * 17 7 6 31 31 H 1.09002 * 117.49734 * 0.02562 * 18 17 7 32 32 H 1.08994 * 117.49847 * 145.02044 * 18 17 7 33 33 H 1.09001 * 117.49936 * 214.98052 * 19 17 7 34 34 H 1.08999 * 117.50086 * 359.97438 * 19 17 7 35 35 H 1.08000 * 126.74037 * 0.02562 * 21 20 2 36 36 H 1.08000 * 126.39771 * 180.16250 * 22 21 20 37 37 H 1.08002 * 125.47896 * 179.74285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1858 1.1756 0.0000 4 6 3.5987 1.1757 0.0005 5 8 4.2072 0.1216 0.0005 6 8 4.2737 2.3448 0.0011 7 6 5.7007 2.2700 0.0010 8 1 6.0170 1.3624 -0.5133 9 6 6.2668 3.4728 -0.7088 10 1 5.6031 4.2198 -1.1185 11 6 7.6319 3.6200 -0.8342 12 7 8.4400 2.7105 -0.3349 13 14 8.3335 5.1114 -1.7135 14 1 8.5557 6.2047 -0.7334 15 1 9.6247 4.7481 -2.3510 16 1 7.3781 5.5668 -2.7550 17 6 6.2101 2.2425 1.4435 18 6 7.1895 1.1311 1.8259 19 6 5.7464 1.0884 2.3346 20 6 2.2147 -1.2257 -0.0005 21 6 2.2175 -2.1635 1.0118 22 6 3.0466 -3.2108 0.5832 23 6 3.5131 -2.8764 -0.6407 24 8 3.0117 -1.6834 -0.9887 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6457 2.1110 0.0004 29 1 9.4004 2.8139 -0.4234 30 1 6.3466 3.2170 1.9125 31 1 7.4714 0.4196 1.0497 32 1 7.9702 1.3742 2.5466 33 1 5.5783 1.3035 3.3898 34 1 5.0782 0.3489 1.8933 35 1 1.6843 -2.1040 1.9491 36 1 3.2728 -4.1141 1.1304 37 1 4.1826 -3.4743 -1.2412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345977842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -24.467139 kcal Electronic energy + Delta-G solvation = -21709.778224 eV Core-core repulsion = 18420.691724 eV Total energy + Delta-G solvation = -3289.086500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.16743 -39.73076 -36.83590 -35.25190 -34.63964 -32.59516 -32.57657 -29.09886 -28.48083 -27.41564 -23.64639 -22.66690 -21.35519 -21.22033 -20.96628 -19.27472 -18.90745 -17.55299 -16.63655 -16.37007 -15.67524 -15.44691 -15.11622 -14.58983 -14.13405 -13.70787 -13.45661 -13.26283 -12.92519 -12.63985 -12.59400 -12.35551 -12.26561 -11.88552 -11.46922 -11.30569 -10.99474 -10.91756 -10.39702 -10.24222 -9.78016 -9.74628 -9.59857 -9.31131 -9.24908 -8.96631 -8.57303 -8.36341 -7.87520 -6.10386 -4.18117 0.86957 2.10756 2.87668 3.27533 3.33294 3.36893 3.38730 3.69549 3.85622 4.39309 4.83237 5.01086 5.16031 5.22613 5.24907 5.29511 5.31780 5.41743 5.64459 5.79231 5.94737 6.00112 6.04669 6.17855 6.20056 6.28936 6.43454 6.53171 6.62828 6.74880 6.78845 7.06096 7.23140 7.34319 7.41892 7.46529 7.68776 7.91454 8.18003 8.70327 8.96656 9.46522 10.96371 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.005275 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.343999 B = 5306.534889 C = 5673.760280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.017 3.983 3 C -0.161 4.161 4 C 0.476 3.524 5 O -0.498 6.498 6 O -0.342 6.342 7 C 0.246 3.754 8 H 0.046 0.954 9 C -0.526 4.526 10 H 0.068 0.932 11 C 0.068 3.932 12 N -0.873 5.873 13 Si 0.905 3.095 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.272 1.272 17 C -0.114 4.114 18 C -0.123 4.123 19 C -0.228 4.228 20 C 0.029 3.971 21 C -0.193 4.193 22 C -0.218 4.218 23 C -0.027 4.027 24 O -0.141 6.141 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.263 0.737 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.335 -7.946 1.976 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.016 3.984 3 C -0.179 4.179 4 C 0.322 3.678 5 O -0.391 6.391 6 O -0.258 6.258 7 C 0.193 3.807 8 H 0.064 0.936 9 C -0.564 4.564 10 H 0.086 0.914 11 C -0.135 4.135 12 N -0.509 5.509 13 Si 0.733 3.267 14 H -0.205 1.205 15 H -0.211 1.211 16 H -0.197 1.197 17 C -0.133 4.133 18 C -0.161 4.161 19 C -0.265 4.265 20 C -0.022 4.022 21 C -0.212 4.212 22 C -0.237 4.237 23 C -0.096 4.096 24 O -0.035 6.035 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.163 0.837 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -12.842 -8.102 1.721 15.281 hybrid contribution 0.927 0.661 -0.067 1.141 sum -11.915 -7.441 1.653 14.145 Atomic orbital electron populations 1.20919 0.88758 1.03837 1.03397 1.19251 0.95512 0.89003 0.94595 1.21705 0.92759 0.98913 1.04572 1.19782 0.89594 0.83616 0.74774 1.90829 1.70523 1.32368 1.45342 1.86210 1.25960 1.31800 1.81839 1.19753 0.70322 0.99345 0.91307 0.93634 1.20928 0.91630 1.06893 1.36969 0.91413 1.24881 0.96462 0.96827 0.95377 1.70055 1.03450 1.33585 1.43819 0.86382 0.78364 0.82282 0.79718 1.20480 1.21078 1.19704 1.22621 1.02248 0.92339 0.96085 1.22335 0.90184 1.02117 1.01427 1.23272 1.00237 1.04706 0.98328 1.19328 0.96646 0.95778 0.90415 1.21892 1.05093 0.94345 0.99897 1.21512 1.03621 1.01541 0.97043 1.24007 1.01383 0.86165 0.98090 1.84181 1.48021 1.30533 1.40720 0.89785 0.90576 0.90121 0.83653 0.92726 0.89529 0.89461 0.90962 0.91262 0.88791 0.83889 0.83901 0.78718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.02 36.00 0.36 -0.65 16 2 C 0.02 0.24 5.79 -104.26 -0.60 -0.36 16 3 C -0.16 -2.59 9.63 -39.31 -0.38 -2.97 16 4 C 0.48 10.23 6.83 31.89 0.22 10.45 16 5 O -0.50 -11.62 9.86 -27.23 -0.27 -11.89 16 6 O -0.34 -8.35 9.72 -41.31 -0.40 -8.75 16 7 C 0.25 6.65 2.21 -27.88 -0.06 6.59 16 8 H 0.05 1.37 6.87 -51.93 -0.36 1.01 16 9 C -0.53 -14.93 8.86 -34.44 -0.31 -15.24 16 10 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 11 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 12 N -0.87 -24.69 11.43 55.43 0.63 -24.06 16 13 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 17 C -0.11 -2.89 4.46 -90.62 -0.40 -3.29 16 18 C -0.12 -2.95 9.04 -26.69 -0.24 -3.20 16 19 C -0.23 -5.15 9.79 -26.69 -0.26 -5.41 16 20 C 0.03 0.47 4.37 -38.41 -0.17 0.30 16 21 C -0.19 -2.83 10.90 -38.90 -0.42 -3.25 16 22 C -0.22 -3.06 10.87 -39.90 -0.43 -3.49 16 23 C -0.03 -0.40 12.06 29.64 0.36 -0.04 16 24 O -0.14 -2.51 8.91 -18.70 -0.17 -2.68 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 27 H 0.08 0.57 8.08 -51.93 -0.42 0.16 16 28 H 0.15 1.89 8.06 -52.48 -0.42 1.46 16 29 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.09 2.26 8.11 -51.93 -0.42 1.83 16 31 H 0.09 2.24 8.05 -51.93 -0.42 1.82 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 2.21 5.33 -51.93 -0.28 1.93 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 37 H 0.20 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 318.23 15.07 4.80 4.80 Total: -1.00 -32.26 318.23 -7.69 -39.95 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -4.82 Total: 5.15 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -2.44 Total: -18.75 kcal Atomic # 7 Polarization: -24.69 SS G_CDS: 0.63 Total: -24.06 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.84 Total: -23.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.26 -7.69 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.480 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds