Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35754 * 120.00164 * 2 1 4 4 C 1.41296 * 120.00329 * 179.97438 * 3 2 1 5 5 O 1.21714 * 119.99472 * 0.02562 * 4 3 2 6 6 O 1.34996 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.42898 * 116.99826 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.47259 * 30.00500 * 7 6 4 9 9 C 1.50699 * 109.46964 * 150.00288 * 7 6 4 10 10 H 1.08000 * 119.99792 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 7 6 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47256 * 90.00491 * 13 11 9 15 15 H 1.48506 * 109.46930 * 210.00332 * 13 11 9 16 16 H 1.48499 * 109.47104 * 330.00193 * 13 11 9 17 17 C 1.52997 * 109.47319 * 270.00258 * 7 6 4 18 18 C 1.53001 * 117.50135 * 128.74714 * 17 7 6 19 19 C 1.53000 * 117.49905 * 60.08724 * 17 7 6 20 20 C 1.41537 * 120.00204 * 180.02562 * 2 1 3 21 21 C 1.38000 * 126.10402 * 294.71741 * 20 2 1 22 22 C 1.40281 * 106.52439 * 179.88617 * 21 20 2 23 23 C 1.35181 * 107.21034 * 0.37055 * 22 21 20 24 24 O 1.34011 * 109.04144 * 359.76977 * 23 22 21 25 25 H 1.09005 * 109.46993 * 89.99704 * 1 2 3 26 26 H 1.09002 * 109.46986 * 209.99415 * 1 2 3 27 27 H 1.08993 * 109.46965 * 329.99696 * 1 2 3 28 28 H 1.08003 * 119.99805 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 30 30 H 1.09006 * 115.55153 * 274.42093 * 17 7 6 31 31 H 1.09002 * 117.49734 * 0.02562 * 18 17 7 32 32 H 1.08994 * 117.49847 * 145.02044 * 18 17 7 33 33 H 1.09001 * 117.49936 * 214.98052 * 19 17 7 34 34 H 1.08999 * 117.50086 * 359.97438 * 19 17 7 35 35 H 1.08000 * 126.74037 * 0.02562 * 21 20 2 36 36 H 1.08000 * 126.39771 * 180.16250 * 22 21 20 37 37 H 1.08002 * 125.47896 * 179.74285 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1858 1.1756 0.0000 4 6 3.5987 1.1757 0.0005 5 8 4.2072 0.1216 0.0005 6 8 4.2737 2.3448 0.0011 7 6 5.7007 2.2700 0.0010 8 1 6.0170 1.3624 -0.5133 9 6 6.2668 3.4728 -0.7088 10 1 5.6031 4.2198 -1.1185 11 6 7.6319 3.6200 -0.8342 12 7 8.4400 2.7105 -0.3349 13 14 8.3335 5.1114 -1.7135 14 1 8.5557 6.2047 -0.7334 15 1 9.6247 4.7481 -2.3510 16 1 7.3781 5.5668 -2.7550 17 6 6.2101 2.2425 1.4435 18 6 7.1895 1.1311 1.8259 19 6 5.7464 1.0884 2.3346 20 6 2.2147 -1.2257 -0.0005 21 6 2.2175 -2.1635 1.0118 22 6 3.0466 -3.2108 0.5832 23 6 3.5131 -2.8764 -0.6407 24 8 3.0117 -1.6834 -0.9887 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.6457 2.1110 0.0004 29 1 9.4004 2.8139 -0.4234 30 1 6.3466 3.2170 1.9125 31 1 7.4714 0.4196 1.0497 32 1 7.9702 1.3742 2.5466 33 1 5.5783 1.3035 3.3898 34 1 5.0782 0.3489 1.8933 35 1 1.6843 -2.1040 1.9491 36 1 3.2728 -4.1141 1.1304 37 1 4.1826 -3.4743 -1.2412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345977842.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -41.689829 kcal Electronic energy + Delta-G solvation = -21710.525056 eV Core-core repulsion = 18420.691724 eV Total energy + Delta-G solvation = -3289.833332 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.35852 -41.43928 -38.55757 -36.89816 -36.14385 -34.71138 -33.74733 -30.60948 -29.60681 -29.03822 -25.47019 -24.10332 -23.10718 -22.54090 -22.44569 -21.19278 -20.20555 -19.20515 -18.45798 -17.93333 -17.11779 -16.98956 -16.75492 -16.41176 -15.78207 -15.22005 -14.65137 -14.61262 -14.29735 -13.99832 -13.74354 -13.66100 -13.36227 -13.30540 -13.18705 -12.95322 -12.81775 -12.74024 -12.30451 -12.18084 -11.77656 -11.46991 -11.20428 -10.95496 -10.76563 -10.59237 -10.48134 -10.37913 -9.06102 -8.21842 -6.39133 -0.37641 0.91943 1.40850 1.42459 1.53302 1.75333 2.02832 2.19131 2.43169 2.49865 3.05163 3.24380 3.77415 3.97197 4.09121 4.15960 4.22632 4.29288 4.33128 4.42879 4.48731 4.63967 4.77331 4.78170 4.84289 4.95744 5.01222 5.08659 5.10835 5.25591 5.26841 5.37642 5.41906 5.48357 5.57033 5.69885 5.87411 6.18392 6.25955 6.64914 7.07241 7.32112 8.84534 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.005275 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.343999 B = 5306.534889 C = 5673.760280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.054 3.946 3 C -0.200 4.200 4 C 0.468 3.532 5 O -0.527 6.527 6 O -0.357 6.357 7 C 0.255 3.745 8 H 0.001 0.999 9 C -0.557 4.557 10 H 0.062 0.938 11 C 0.025 3.975 12 N -0.896 5.896 13 Si 0.975 3.025 14 H -0.269 1.269 15 H -0.278 1.278 16 H -0.268 1.268 17 C -0.130 4.130 18 C -0.121 4.121 19 C -0.197 4.197 20 C -0.007 4.007 21 C -0.192 4.192 22 C -0.221 4.221 23 C -0.045 4.045 24 O -0.173 6.173 25 H 0.103 0.897 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.175 0.825 29 H 0.267 0.733 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.852 -7.968 2.820 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.053 3.947 3 C -0.219 4.219 4 C 0.317 3.683 5 O -0.421 6.421 6 O -0.274 6.274 7 C 0.201 3.799 8 H 0.019 0.981 9 C -0.595 4.595 10 H 0.080 0.920 11 C -0.177 4.177 12 N -0.532 5.532 13 Si 0.798 3.202 14 H -0.194 1.194 15 H -0.203 1.203 16 H -0.193 1.193 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.234 4.234 20 C -0.057 4.057 21 C -0.211 4.211 22 C -0.240 4.240 23 C -0.114 4.114 24 O -0.068 6.068 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.192 0.808 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.386 -8.136 2.575 16.727 hybrid contribution 1.337 0.465 -0.338 1.455 sum -13.049 -7.671 2.237 15.302 Atomic orbital electron populations 1.21126 0.84544 1.05937 1.05039 1.19941 0.97984 0.87345 0.89449 1.21733 0.89724 1.01212 1.09215 1.20692 0.91453 0.82348 0.73792 1.90807 1.71494 1.32794 1.46977 1.86186 1.24605 1.33784 1.82783 1.19330 0.71950 0.96788 0.91797 0.98127 1.21215 0.92467 1.07479 1.38314 0.92019 1.25740 0.96458 0.99757 0.95786 1.70172 1.03727 1.35045 1.44211 0.85313 0.77563 0.78622 0.78656 1.19373 1.20343 1.19296 1.22430 1.04063 0.92626 0.95803 1.22237 0.91414 1.01024 1.01194 1.23227 0.98589 1.02305 0.99305 1.19960 0.97483 0.97161 0.91131 1.22313 1.04741 0.93763 1.00250 1.21929 1.02946 1.02345 0.96763 1.24700 1.01694 0.85784 0.99214 1.84155 1.48884 1.31834 1.41938 0.87916 0.88907 0.87563 0.80764 0.92447 0.90430 0.91986 0.89356 0.88092 0.89805 0.81445 0.81183 0.76386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 10.02 71.23 0.71 -0.87 16 2 C 0.05 1.43 5.79 -19.63 -0.11 1.31 16 3 C -0.20 -6.37 9.63 22.45 0.22 -6.16 16 4 C 0.47 20.77 6.83 68.57 0.47 21.24 16 5 O -0.53 -25.61 9.86 26.60 0.26 -25.34 16 6 O -0.36 -18.16 9.72 -59.15 -0.57 -18.73 16 7 C 0.26 14.44 2.21 29.85 0.07 14.51 16 8 H 0.00 0.06 6.87 -2.39 -0.02 0.05 16 9 C -0.56 -32.72 8.86 25.60 0.23 -32.49 16 10 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 11 C 0.02 1.38 5.30 84.65 0.45 1.83 16 12 N -0.90 -51.75 11.43 21.45 0.25 -51.51 16 13 Si 0.97 43.94 29.54 68.60 2.03 45.97 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 17 C -0.13 -6.76 4.46 -10.79 -0.05 -6.81 16 18 C -0.12 -5.92 9.04 30.62 0.28 -5.64 16 19 C -0.20 -8.87 9.79 30.62 0.30 -8.57 16 20 C -0.01 -0.24 4.37 23.03 0.10 -0.14 16 21 C -0.19 -5.29 10.90 22.71 0.25 -5.04 16 22 C -0.22 -5.88 10.87 22.06 0.24 -5.64 16 23 C -0.05 -1.34 12.06 67.11 0.81 -0.53 16 24 O -0.17 -6.27 8.91 16.22 0.14 -6.12 16 25 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.09 1.08 8.10 -2.39 -0.02 1.06 16 27 H 0.11 1.05 8.08 -2.39 -0.02 1.03 16 28 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 30 H 0.08 4.13 8.11 -2.38 -0.02 4.11 16 31 H 0.06 3.32 8.05 -2.39 -0.02 3.30 16 32 H 0.09 3.96 8.14 -2.39 -0.02 3.94 16 33 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.08 3.98 5.33 -2.39 -0.01 3.97 16 35 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 36 H 0.17 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.22 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -73.37 318.23 7.12 -66.24 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 1.07 Total: 22.49 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.95 Total: -32.99 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 0.25 Total: -51.51 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -0.17 Total: -50.20 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -73.37 7.12 -66.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345977842.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.552 kcal (2) G-P(sol) polarization free energy of solvation -73.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds