Wall clock time and date at job start Mon Mar 30 2020 01:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47091 * 269.99692 * 3 2 1 5 5 H 1.48501 * 109.47296 * 29.99735 * 3 2 1 6 6 H 1.48501 * 109.47418 * 149.99631 * 3 2 1 7 7 C 1.37882 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99554 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47449 * 59.99984 * 9 7 2 12 12 C 1.34231 * 117.00361 * 89.99690 * 11 9 7 13 13 O 1.20819 * 119.99715 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00100 * 179.97438 * 12 11 9 15 15 H 1.09001 * 115.54902 * 325.67233 * 14 12 11 16 16 C 1.52998 * 117.49562 * 111.38044 * 14 12 11 17 17 C 1.52997 * 60.00263 * 107.49152 * 16 14 12 18 18 H 1.09000 * 117.49488 * 252.51560 * 17 16 14 19 19 C 1.53000 * 117.52481 * 107.48074 * 17 16 14 20 20 C 1.52996 * 117.49990 * 179.97438 * 19 17 16 21 21 C 1.52991 * 117.49877 * 111.37029 * 19 17 16 22 22 C 1.50706 * 109.47294 * 299.99464 * 9 7 2 23 23 C 1.34508 * 125.79203 * 264.72286 * 22 9 7 24 24 C 1.41378 * 106.84215 * 179.88912 * 23 22 9 25 25 C 1.34514 * 106.84085 * 0.36973 * 24 23 22 26 26 O 1.34301 * 108.42024 * 359.77305 * 25 24 23 27 27 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.09007 * 117.49613 * 214.97845 * 16 14 12 29 29 H 1.08995 * 117.50338 * 359.97438 * 16 14 12 30 30 H 1.09000 * 115.54397 * 325.70110 * 19 17 16 31 31 H 1.08998 * 117.49919 * 359.97438 * 20 19 17 32 32 H 1.09001 * 117.49725 * 145.02383 * 20 19 17 33 33 H 1.09004 * 117.49685 * 214.97896 * 21 19 17 34 34 H 1.08996 * 117.50178 * 359.97438 * 21 19 17 35 35 H 1.08002 * 126.57900 * 0.02562 * 23 22 9 36 36 H 1.08003 * 126.57840 * 180.12377 * 24 23 22 37 37 H 1.08000 * 125.79308 * 179.75316 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 1.9593 -3.3276 0.0005 11 8 0.4166 -2.5763 -1.1852 12 6 0.9636 -3.1267 -2.2805 13 8 2.1017 -3.5310 -2.2493 14 6 0.1578 -3.2414 -3.5488 15 1 -0.9077 -3.4273 -3.4136 16 6 0.5786 -2.3705 -4.7342 17 6 0.8376 -3.8781 -4.7626 18 1 1.8677 -4.2141 -4.6438 19 6 -0.0301 -4.7272 -5.6938 20 6 0.2298 -6.2346 -5.7222 21 6 0.6497 -5.3639 -6.9075 22 6 0.3841 -2.5787 1.2308 23 6 0.7135 -3.1810 2.3875 24 6 -0.3836 -3.0134 3.2634 25 6 -1.3211 -2.3259 2.5868 26 8 -0.8506 -2.0653 1.3561 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2102 -1.9831 -5.3792 29 1 1.4380 -1.7143 -4.5967 30 1 -1.0602 -4.3912 -5.8125 31 1 1.0192 -6.6215 -5.0778 32 1 -0.6296 -6.8910 -5.8594 33 1 0.0667 -5.4472 -7.8247 34 1 1.7150 -5.1775 -7.0430 35 1 1.6393 -3.6923 2.6061 36 1 -0.4567 -3.3724 4.2794 37 1 -2.2882 -2.0333 2.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:21 Heat of formation + Delta-G solvation = -18.715835 kcal Electronic energy + Delta-G solvation = -21191.287005 eV Core-core repulsion = 17902.449900 eV Total energy + Delta-G solvation = -3288.837105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30342 -39.56547 -37.91870 -35.67008 -34.57797 -32.91731 -31.82426 -29.85506 -26.62198 -25.00250 -23.46005 -22.76907 -22.28395 -20.66882 -20.11090 -19.48193 -19.28688 -17.13007 -16.60902 -16.45318 -15.67495 -15.16981 -14.93724 -14.63757 -14.43251 -14.15675 -13.53371 -12.98835 -12.70579 -12.25376 -11.85176 -11.75618 -11.65107 -11.52877 -11.31248 -11.22753 -11.12199 -11.07531 -10.98296 -10.73994 -10.36836 -9.91894 -9.81984 -9.54438 -9.36202 -9.05259 -8.81843 -8.74644 -7.33191 -6.21541 -4.43703 2.91545 3.05384 3.20120 3.26775 3.31062 3.49481 3.64477 3.90461 4.25400 4.27514 4.35442 4.65042 4.83952 4.97096 5.10052 5.18991 5.33678 5.35062 5.46285 5.60039 5.68256 5.85438 5.88488 5.94826 5.99721 6.08981 6.13084 6.26201 6.41190 6.44905 6.49085 6.81663 6.91264 7.21707 7.49662 7.62998 7.79787 7.82996 8.42239 8.59891 9.02138 9.30343 10.77623 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.005503 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.564239 B = 5086.657405 C = 6120.356805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.081 3.919 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.278 3.722 10 H 0.070 0.930 11 O -0.330 6.330 12 C 0.489 3.511 13 O -0.532 6.532 14 C -0.153 4.153 15 H 0.127 0.873 16 C -0.141 4.141 17 C -0.097 4.097 18 H 0.117 0.883 19 C -0.122 4.122 20 C -0.178 4.178 21 C -0.176 4.176 22 C 0.082 3.918 23 C -0.265 4.265 24 C -0.221 4.221 25 C -0.082 4.082 26 O -0.117 6.117 27 H 0.267 0.733 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 -6.485 -7.012 10.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.130 4.130 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.092 0.908 9 C 0.226 3.774 10 H 0.088 0.912 11 O -0.244 6.244 12 C 0.333 3.667 13 O -0.424 6.424 14 C -0.172 4.172 15 H 0.145 0.855 16 C -0.178 4.178 17 C -0.116 4.116 18 H 0.135 0.865 19 C -0.140 4.140 20 C -0.215 4.215 21 C -0.213 4.213 22 C 0.029 3.971 23 C -0.284 4.284 24 C -0.240 4.240 25 C -0.151 4.151 26 O -0.009 6.009 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.124 0.876 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.263 -6.312 -7.159 10.086 hybrid contribution 0.476 0.989 0.573 1.239 sum -2.787 -5.323 -6.585 8.914 Atomic orbital electron populations 1.70052 1.05740 1.27295 1.42747 1.25160 0.94989 0.99753 0.93099 0.86504 0.80145 0.82507 0.78505 1.20159 1.20779 1.19396 1.21244 0.93422 0.89288 1.54556 0.90807 1.18798 0.84763 0.98226 0.75590 0.91179 1.86715 1.47430 1.70014 1.20281 1.22110 0.85354 0.73854 0.85410 1.90526 1.19416 1.47641 1.84857 1.21795 1.00483 1.07869 0.87033 0.85541 1.22984 1.03642 0.93120 0.98087 1.21847 0.99680 0.94193 0.95840 0.86507 1.21719 0.99145 0.94179 0.98977 1.22947 1.03629 0.93112 1.01771 1.22920 1.01358 1.04481 0.92542 1.22812 0.83690 0.92962 0.97654 1.21164 1.01490 1.11070 0.94715 1.21490 0.95398 1.06626 1.00524 1.23786 1.00437 1.04962 0.85932 1.84414 1.27673 1.59133 1.29645 0.92275 0.87835 0.87941 0.87616 0.88534 0.88842 0.88885 0.88668 0.84938 0.85153 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.90 10.63 55.43 0.59 -22.31 16 2 C 0.08 2.19 5.24 -17.82 -0.09 2.10 16 3 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.55 -15.26 8.91 -34.44 -0.31 -15.56 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.28 7.33 2.58 -29.03 -0.07 7.26 16 10 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 11 O -0.33 -8.50 9.25 -42.06 -0.39 -8.89 16 12 C 0.49 11.16 7.71 36.00 0.28 11.44 16 13 O -0.53 -13.05 15.48 -18.74 -0.29 -13.34 16 14 C -0.15 -2.68 6.02 -91.77 -0.55 -3.23 16 15 H 0.13 2.02 8.14 -51.93 -0.42 1.60 16 16 C -0.14 -2.13 9.96 -26.73 -0.27 -2.39 16 17 C -0.10 -1.42 5.36 -90.62 -0.49 -1.91 16 18 H 0.12 1.86 7.67 -51.93 -0.40 1.46 16 19 C -0.12 -1.42 5.85 -90.63 -0.53 -1.95 16 20 C -0.18 -1.89 10.25 -26.76 -0.27 -2.16 16 21 C -0.18 -1.75 10.25 -26.76 -0.27 -2.02 16 22 C 0.08 2.08 5.58 -35.62 -0.20 1.88 16 23 C -0.27 -5.96 10.81 -39.71 -0.43 -6.39 16 24 C -0.22 -4.42 10.91 -39.70 -0.43 -4.86 16 25 C -0.08 -1.69 12.09 29.42 0.36 -1.33 16 26 O -0.12 -2.94 8.89 2.03 0.02 -2.92 16 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 36 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 37 H 0.18 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -31.07 326.86 -8.42 -39.49 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.97 Total: 6.29 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -3.29 Total: -19.13 kcal Atomic # 7 Polarization: -22.90 SS G_CDS: 0.59 Total: -22.31 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -0.66 Total: -25.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.07 -8.42 -39.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.775 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds