Wall clock time and date at job start Mon Mar 30 2020 01:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00220 * 2 1 4 4 H 1.48498 * 109.47091 * 269.99692 * 3 2 1 5 5 H 1.48501 * 109.47296 * 29.99735 * 3 2 1 6 6 H 1.48501 * 109.47418 * 149.99631 * 3 2 1 7 7 C 1.37882 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99554 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46665 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47449 * 59.99984 * 9 7 2 12 12 C 1.34231 * 117.00361 * 89.99690 * 11 9 7 13 13 O 1.20819 * 119.99715 * 0.02562 * 12 11 9 14 14 C 1.50698 * 120.00100 * 179.97438 * 12 11 9 15 15 H 1.09001 * 115.54902 * 325.67233 * 14 12 11 16 16 C 1.52998 * 117.49562 * 111.38044 * 14 12 11 17 17 C 1.52997 * 60.00263 * 107.49152 * 16 14 12 18 18 H 1.09000 * 117.49488 * 252.51560 * 17 16 14 19 19 C 1.53000 * 117.52481 * 107.48074 * 17 16 14 20 20 C 1.52996 * 117.49990 * 179.97438 * 19 17 16 21 21 C 1.52991 * 117.49877 * 111.37029 * 19 17 16 22 22 C 1.50706 * 109.47294 * 299.99464 * 9 7 2 23 23 C 1.34508 * 125.79203 * 264.72286 * 22 9 7 24 24 C 1.41378 * 106.84215 * 179.88912 * 23 22 9 25 25 C 1.34514 * 106.84085 * 0.36973 * 24 23 22 26 26 O 1.34301 * 108.42024 * 359.77305 * 25 24 23 27 27 H 0.97001 * 119.99949 * 0.02562 * 1 2 3 28 28 H 1.09007 * 117.49613 * 214.97845 * 16 14 12 29 29 H 1.08995 * 117.50338 * 359.97438 * 16 14 12 30 30 H 1.09000 * 115.54397 * 325.70110 * 19 17 16 31 31 H 1.08998 * 117.49919 * 359.97438 * 20 19 17 32 32 H 1.09001 * 117.49725 * 145.02383 * 20 19 17 33 33 H 1.09004 * 117.49685 * 214.97896 * 21 19 17 34 34 H 1.08996 * 117.50178 * 359.97438 * 21 19 17 35 35 H 1.08002 * 126.57900 * 0.02562 * 23 22 9 36 36 H 1.08003 * 126.57840 * 180.12377 * 24 23 22 37 37 H 1.08000 * 125.79308 * 179.75316 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 1.9593 -3.3276 0.0005 11 8 0.4166 -2.5763 -1.1852 12 6 0.9636 -3.1267 -2.2805 13 8 2.1017 -3.5310 -2.2493 14 6 0.1578 -3.2414 -3.5488 15 1 -0.9077 -3.4273 -3.4136 16 6 0.5786 -2.3705 -4.7342 17 6 0.8376 -3.8781 -4.7626 18 1 1.8677 -4.2141 -4.6438 19 6 -0.0301 -4.7272 -5.6938 20 6 0.2298 -6.2346 -5.7222 21 6 0.6497 -5.3639 -6.9075 22 6 0.3841 -2.5787 1.2308 23 6 0.7135 -3.1810 2.3875 24 6 -0.3836 -3.0134 3.2634 25 6 -1.3211 -2.3259 2.5868 26 8 -0.8506 -2.0653 1.3561 27 1 -0.4850 0.8401 -0.0004 28 1 -0.2102 -1.9831 -5.3792 29 1 1.4380 -1.7143 -4.5967 30 1 -1.0602 -4.3912 -5.8125 31 1 1.0192 -6.6215 -5.0778 32 1 -0.6296 -6.8910 -5.8594 33 1 0.0667 -5.4472 -7.8247 34 1 1.7150 -5.1775 -7.0430 35 1 1.6393 -3.6923 2.6061 36 1 -0.4567 -3.3724 4.2794 37 1 -2.2882 -2.0333 2.9682 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706897.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:20 Heat of formation + Delta-G solvation = -34.324308 kcal Electronic energy + Delta-G solvation = -21191.963839 eV Core-core repulsion = 17902.449900 eV Total energy + Delta-G solvation = -3289.513939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.06030 -41.26653 -39.18494 -37.34165 -35.91570 -34.94488 -33.58404 -31.71668 -28.48814 -26.62139 -24.80895 -24.35255 -23.12682 -22.36657 -21.36975 -21.20788 -20.83630 -19.02445 -18.35832 -18.20882 -17.05346 -16.93752 -16.49905 -16.31600 -16.23817 -15.49752 -15.05418 -14.55423 -14.21558 -13.75278 -13.60059 -13.40226 -13.28260 -13.06396 -13.00337 -12.84252 -12.47642 -12.28403 -12.23566 -12.17867 -11.87014 -11.82335 -11.32688 -11.02585 -10.98286 -10.81993 -10.51144 -10.45404 -9.09782 -8.24335 -6.55780 1.16299 1.34024 1.36661 1.37715 1.46896 1.87759 2.10026 2.31594 2.57086 2.62038 3.05611 3.24526 3.54914 3.70527 3.85470 4.03986 4.17966 4.26265 4.32832 4.34012 4.38237 4.39584 4.45851 4.63766 4.77264 4.84439 4.96541 5.06632 5.11850 5.15200 5.22097 5.32008 5.36732 5.41634 5.54367 5.77028 5.87697 5.96297 6.48461 6.69659 7.10854 7.24395 8.73702 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017231 B = 0.005503 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.564239 B = 5086.657405 C = 6120.356805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.042 3.958 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.579 4.579 8 H 0.059 0.941 9 C 0.277 3.723 10 H 0.055 0.945 11 O -0.346 6.346 12 C 0.477 3.523 13 O -0.560 6.560 14 C -0.175 4.175 15 H 0.143 0.857 16 C -0.130 4.130 17 C -0.076 4.076 18 H 0.098 0.902 19 C -0.134 4.134 20 C -0.182 4.182 21 C -0.160 4.160 22 C 0.041 3.959 23 C -0.266 4.266 24 C -0.218 4.218 25 C -0.081 4.081 26 O -0.146 6.146 27 H 0.269 0.731 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.145 0.855 36 H 0.171 0.829 37 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.639 -6.350 -7.555 10.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.166 4.166 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.615 4.615 8 H 0.078 0.922 9 C 0.225 3.775 10 H 0.073 0.927 11 O -0.261 6.261 12 C 0.323 3.677 13 O -0.454 6.454 14 C -0.194 4.194 15 H 0.161 0.839 16 C -0.167 4.167 17 C -0.095 4.095 18 H 0.116 0.884 19 C -0.152 4.152 20 C -0.219 4.219 21 C -0.197 4.197 22 C -0.012 4.012 23 C -0.285 4.285 24 C -0.237 4.237 25 C -0.149 4.149 26 O -0.039 6.039 27 H 0.079 0.921 28 H 0.156 0.844 29 H 0.103 0.897 30 H 0.141 0.859 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.662 -6.190 -7.707 10.930 hybrid contribution 0.910 0.843 0.778 1.464 sum -3.753 -5.347 -6.929 9.523 Atomic orbital electron populations 1.70161 1.06690 1.27979 1.42950 1.25813 0.95845 1.02447 0.92516 0.85582 0.78935 0.78705 0.78698 1.19613 1.19621 1.19375 1.21377 0.93016 0.90832 1.56260 0.92243 1.18636 0.85316 0.97071 0.76527 0.92733 1.86692 1.47618 1.70756 1.21041 1.23173 0.85636 0.72668 0.86176 1.90488 1.20876 1.48746 1.85296 1.21889 1.00729 1.11463 0.85312 0.83918 1.23132 1.03818 0.93320 0.96456 1.21857 0.98989 0.94511 0.94099 0.88430 1.21737 0.99567 0.94310 0.99585 1.23028 1.04024 0.92712 1.02104 1.23020 1.01493 1.02440 0.92732 1.22702 0.84658 0.95737 0.98092 1.21557 1.02642 1.09884 0.94398 1.21902 0.93869 1.06014 1.01890 1.24742 1.02029 1.03830 0.84342 1.84347 1.27713 1.59906 1.31965 0.92130 0.84372 0.89665 0.85901 0.89880 0.87028 0.86496 0.88902 0.83761 0.81116 0.75749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.60 10.63 21.45 0.23 -47.37 16 2 C 0.04 2.35 5.24 84.66 0.44 2.80 16 3 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 7 C -0.58 -33.56 8.91 25.60 0.23 -33.34 16 8 H 0.06 3.47 7.81 -2.91 -0.02 3.45 16 9 C 0.28 15.35 2.58 29.10 0.07 15.43 16 10 H 0.05 3.05 7.15 -2.39 -0.02 3.03 16 11 O -0.35 -18.71 9.25 -48.75 -0.45 -19.16 16 12 C 0.48 22.87 7.71 71.24 0.55 23.42 16 13 O -0.56 -29.14 15.48 21.98 0.34 -28.80 16 14 C -0.17 -6.20 6.02 -11.54 -0.07 -6.27 16 15 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 16 C -0.13 -3.83 9.96 30.59 0.30 -3.53 16 17 C -0.08 -2.19 5.36 -10.79 -0.06 -2.25 16 18 H 0.10 3.19 7.67 -2.39 -0.02 3.17 16 19 C -0.13 -2.84 5.85 -10.80 -0.06 -2.90 16 20 C -0.18 -3.53 10.25 30.58 0.31 -3.22 16 21 C -0.16 -2.75 10.25 30.58 0.31 -2.43 16 22 C 0.04 2.12 5.58 24.83 0.14 2.26 16 23 C -0.27 -11.94 10.81 22.19 0.24 -11.70 16 24 C -0.22 -8.25 10.91 22.19 0.24 -8.00 16 25 C -0.08 -3.20 12.09 66.97 0.81 -2.39 16 26 O -0.15 -7.39 8.89 1.02 0.01 -7.38 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.14 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 36 H 0.17 4.96 8.06 -2.91 -0.02 4.93 16 37 H 0.23 6.48 8.06 -2.91 -0.02 6.46 16 Total: -1.00 -70.08 326.86 6.69 -63.40 By element: Atomic # 1 Polarization: 24.95 SS G_CDS: 1.07 Total: 26.02 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 3.47 Total: -32.13 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: 0.23 Total: -47.37 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -0.10 Total: -55.34 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -70.08 6.69 -63.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706897.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.071 kcal (2) G-P(sol) polarization free energy of solvation -70.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds