Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00389 * 2 1 4 4 H 1.48504 * 109.46980 * 240.00404 * 3 2 1 5 5 H 1.48507 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47439 * 120.00174 * 3 2 1 7 7 C 1.37875 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47420 * 59.99440 * 9 7 2 11 11 O 1.45204 * 109.47123 * 180.02562 * 9 7 2 12 12 C 1.34232 * 116.99470 * 209.99586 * 11 9 7 13 13 O 1.20824 * 120.00501 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99609 * 179.97438 * 12 11 9 15 15 H 1.09003 * 115.56114 * 325.69119 * 14 12 11 16 16 C 1.53006 * 117.50000 * 111.37625 * 14 12 11 17 17 C 1.52999 * 117.49887 * 179.97438 * 14 12 11 18 18 H 1.09002 * 117.49803 * 359.97438 * 17 14 12 19 19 C 1.53005 * 117.51737 * 145.02785 * 17 14 12 20 20 C 1.52991 * 117.49934 * 248.50357 * 19 17 14 21 21 C 1.52990 * 60.00112 * 252.51223 * 20 19 17 22 22 C 1.50707 * 109.46588 * 299.99535 * 9 7 2 23 23 C 1.34519 * 125.78357 * 100.00292 * 22 9 7 24 24 C 1.41382 * 106.83764 * 179.97438 * 23 22 9 25 25 C 1.34518 * 106.84147 * 359.97438 * 24 23 22 26 26 O 1.34296 * 125.79122 * 279.69225 * 22 9 7 27 27 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.09004 * 117.49624 * 0.02562 * 16 14 12 29 29 H 1.08992 * 117.49824 * 214.97779 * 16 14 12 30 30 H 1.09004 * 115.55051 * 34.21633 * 19 17 14 31 31 H 1.09007 * 117.50157 * 0.02562 * 20 19 17 32 32 H 1.09000 * 117.49906 * 145.02066 * 20 19 17 33 33 H 1.09007 * 117.50076 * 252.50896 * 21 20 19 34 34 H 1.09006 * 117.51940 * 107.48488 * 21 20 19 35 35 H 1.07996 * 126.58075 * 359.96549 * 23 22 9 36 36 H 1.07998 * 126.58383 * 180.02562 * 24 23 22 37 37 H 1.07999 * 125.79199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 8 2.1945 -3.6028 0.0018 12 6 1.8036 -4.7394 -0.5960 13 8 0.7091 -4.8098 -1.1030 14 6 2.7298 -5.9275 -0.6347 15 1 3.7910 -5.6939 -0.7212 16 6 2.3416 -7.1533 0.1946 17 6 2.2259 -7.1937 -1.3300 18 1 1.2242 -7.1676 -1.7591 19 6 3.2497 -8.0357 -2.0942 20 6 3.1319 -8.0788 -3.6189 21 6 2.7458 -9.3033 -2.7870 22 6 0.3842 -2.5787 1.2308 23 6 -0.9360 -2.3255 1.2806 24 6 -1.3402 -2.5205 2.6213 25 6 -0.2429 -2.8818 3.3105 26 8 0.7976 -2.9199 2.4622 27 1 -0.4850 0.8400 0.0004 28 1 1.4160 -7.1005 0.7679 29 1 3.1473 -7.7261 0.6536 30 1 4.2516 -8.0609 -1.6655 31 1 2.3253 -7.5070 -4.0779 32 1 4.0565 -8.1321 -4.1938 33 1 3.4163 -10.1623 -2.8145 34 1 1.6850 -9.5377 -2.6981 35 1 -1.5662 -2.0298 0.4549 36 1 -2.3385 -2.4030 3.0162 37 1 -0.2058 -3.1069 4.3661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346706902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = -23.055949 kcal Electronic energy + Delta-G solvation = -21078.007567 eV Core-core repulsion = 17788.982261 eV Total energy + Delta-G solvation = -3289.025306 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34816 -39.86940 -38.11680 -35.92102 -34.81695 -33.26075 -31.70969 -29.69175 -26.77638 -25.16771 -23.60371 -22.72315 -22.34799 -20.67307 -20.30783 -19.82376 -19.18092 -17.29689 -16.73401 -16.61382 -15.76917 -15.41863 -15.02326 -14.82318 -14.51053 -14.37536 -13.33373 -13.26090 -12.82561 -12.30179 -12.01249 -11.77939 -11.67503 -11.58048 -11.43393 -11.30838 -11.20390 -11.13169 -10.95604 -10.87996 -10.38860 -10.11668 -10.08406 -9.74898 -9.51874 -9.39206 -8.81953 -8.64529 -7.25977 -6.21141 -4.39124 2.72256 2.86172 3.22934 3.26102 3.27809 3.36279 3.61671 3.94246 4.15022 4.20892 4.26398 4.52458 4.71156 4.82416 5.02524 5.07656 5.17996 5.20786 5.30721 5.53732 5.58106 5.73919 5.79719 5.85086 5.99839 6.03585 6.06021 6.08881 6.28791 6.37529 6.72258 6.98377 7.14685 7.22960 7.39264 7.69328 7.70315 7.86247 8.36198 8.52958 8.79457 9.27706 10.77768 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.004959 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.784084 B = 5645.457863 C = 6550.395734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.079 0.921 11 O -0.344 6.344 12 C 0.484 3.516 13 O -0.517 6.517 14 C -0.156 4.156 15 H 0.132 0.868 16 C -0.143 4.143 17 C -0.093 4.093 18 H 0.119 0.881 19 C -0.124 4.124 20 C -0.177 4.177 21 C -0.175 4.175 22 C 0.027 3.973 23 C -0.179 4.179 24 C -0.217 4.217 25 C -0.089 4.089 26 O -0.177 6.177 27 H 0.269 0.731 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.913 -13.141 -0.705 13.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.569 4.569 8 H 0.095 0.905 9 C 0.245 3.755 10 H 0.096 0.904 11 O -0.259 6.259 12 C 0.327 3.673 13 O -0.407 6.407 14 C -0.175 4.175 15 H 0.150 0.850 16 C -0.180 4.180 17 C -0.111 4.111 18 H 0.136 0.864 19 C -0.142 4.142 20 C -0.214 4.214 21 C -0.212 4.212 22 C -0.024 4.024 23 C -0.199 4.199 24 C -0.237 4.237 25 C -0.156 4.156 26 O -0.073 6.073 27 H 0.079 0.921 28 H 0.120 0.880 29 H 0.125 0.875 30 H 0.125 0.875 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.694 -13.048 -0.774 13.583 hybrid contribution -0.082 1.304 0.254 1.331 sum 3.611 -11.744 -0.519 12.298 Atomic orbital electron populations 1.70024 1.05920 1.27776 1.46529 1.24941 0.95135 0.99538 0.93988 0.86284 0.79345 0.81275 0.79017 1.19710 1.20920 1.19833 1.20857 0.94132 0.87584 1.54326 0.90464 1.19192 0.85729 0.81816 0.88812 0.90405 1.86540 1.48387 1.21843 1.69173 1.22378 0.85718 0.84316 0.74928 1.90601 1.22681 1.83391 1.44009 1.21783 1.00178 0.86890 1.08677 0.84997 1.23032 1.03804 0.97513 0.93640 1.21862 0.99764 0.95447 0.94007 0.86352 1.21714 0.98877 0.99435 0.94216 1.22966 1.03519 1.01630 0.93238 1.22935 1.02074 0.91770 1.04438 1.23543 0.94142 1.00124 0.84601 1.21211 0.94790 1.07018 0.96844 1.21686 0.98901 1.07994 0.95111 1.23607 0.86120 1.10294 0.95611 1.83994 1.36672 1.68417 1.18214 0.92101 0.88005 0.87472 0.87510 0.88438 0.88722 0.88791 0.88631 0.84141 0.85143 0.79880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.16 10.95 55.43 0.61 -23.56 16 2 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 3 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.86 8.89 -34.44 -0.31 -15.16 16 8 H 0.08 2.11 7.81 -52.48 -0.41 1.70 16 9 C 0.30 8.02 2.42 -29.03 -0.07 7.95 16 10 H 0.08 2.24 7.15 -51.93 -0.37 1.87 16 11 O -0.34 -8.35 9.85 -41.36 -0.41 -8.75 16 12 C 0.48 10.28 7.71 36.01 0.28 10.56 16 13 O -0.52 -12.19 15.48 -18.75 -0.29 -12.48 16 14 C -0.16 -2.42 6.02 -91.77 -0.55 -2.98 16 15 H 0.13 1.81 8.14 -51.93 -0.42 1.38 16 16 C -0.14 -1.82 9.95 -26.75 -0.27 -2.09 16 17 C -0.09 -1.21 5.36 -90.64 -0.49 -1.70 16 18 H 0.12 1.73 7.67 -51.93 -0.40 1.33 16 19 C -0.12 -1.30 5.85 -90.63 -0.53 -1.83 16 20 C -0.18 -1.74 10.25 -26.74 -0.27 -2.02 16 21 C -0.18 -1.57 10.25 -26.74 -0.27 -1.85 16 22 C 0.03 0.71 5.53 -35.62 -0.20 0.51 16 23 C -0.18 -4.51 9.17 -39.70 -0.36 -4.88 16 24 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 25 C -0.09 -1.85 12.09 29.42 0.36 -1.49 16 26 O -0.18 -4.40 10.65 4.31 0.05 -4.35 16 27 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.14 3.62 7.87 -52.49 -0.41 3.21 16 36 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 37 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 LS Contribution 327.54 15.07 4.94 4.94 Total: -1.00 -31.17 327.54 -8.30 -39.47 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.95 Total: 7.03 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.21 Total: -18.29 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.61 Total: -23.56 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.65 Total: -25.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.17 -8.30 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.414 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds