Wall clock time and date at job start Mon Mar 30 2020 01:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00389 * 2 1 4 4 H 1.48504 * 109.46980 * 240.00404 * 3 2 1 5 5 H 1.48507 * 109.47116 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47439 * 120.00174 * 3 2 1 7 7 C 1.37875 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00094 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00113 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47420 * 59.99440 * 9 7 2 11 11 O 1.45204 * 109.47123 * 180.02562 * 9 7 2 12 12 C 1.34232 * 116.99470 * 209.99586 * 11 9 7 13 13 O 1.20824 * 120.00501 * 359.97438 * 12 11 9 14 14 C 1.50700 * 119.99609 * 179.97438 * 12 11 9 15 15 H 1.09003 * 115.56114 * 325.69119 * 14 12 11 16 16 C 1.53006 * 117.50000 * 111.37625 * 14 12 11 17 17 C 1.52999 * 117.49887 * 179.97438 * 14 12 11 18 18 H 1.09002 * 117.49803 * 359.97438 * 17 14 12 19 19 C 1.53005 * 117.51737 * 145.02785 * 17 14 12 20 20 C 1.52991 * 117.49934 * 248.50357 * 19 17 14 21 21 C 1.52990 * 60.00112 * 252.51223 * 20 19 17 22 22 C 1.50707 * 109.46588 * 299.99535 * 9 7 2 23 23 C 1.34519 * 125.78357 * 100.00292 * 22 9 7 24 24 C 1.41382 * 106.83764 * 179.97438 * 23 22 9 25 25 C 1.34518 * 106.84147 * 359.97438 * 24 23 22 26 26 O 1.34296 * 125.79122 * 279.69225 * 22 9 7 27 27 H 0.96998 * 120.00013 * 359.97438 * 1 2 3 28 28 H 1.09004 * 117.49624 * 0.02562 * 16 14 12 29 29 H 1.08992 * 117.49824 * 214.97779 * 16 14 12 30 30 H 1.09004 * 115.55051 * 34.21633 * 19 17 14 31 31 H 1.09007 * 117.50157 * 0.02562 * 20 19 17 32 32 H 1.09000 * 117.49906 * 145.02066 * 20 19 17 33 33 H 1.09007 * 117.50076 * 252.50896 * 21 20 19 34 34 H 1.09006 * 117.51940 * 107.48488 * 21 20 19 35 35 H 1.07996 * 126.58075 * 359.96549 * 23 22 9 36 36 H 1.07998 * 126.58383 * 180.02562 * 24 23 22 37 37 H 1.07999 * 125.79199 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8896 11 8 2.1945 -3.6028 0.0018 12 6 1.8036 -4.7394 -0.5960 13 8 0.7091 -4.8098 -1.1030 14 6 2.7298 -5.9275 -0.6347 15 1 3.7910 -5.6939 -0.7212 16 6 2.3416 -7.1533 0.1946 17 6 2.2259 -7.1937 -1.3300 18 1 1.2242 -7.1676 -1.7591 19 6 3.2497 -8.0357 -2.0942 20 6 3.1319 -8.0788 -3.6189 21 6 2.7458 -9.3033 -2.7870 22 6 0.3842 -2.5787 1.2308 23 6 -0.9360 -2.3255 1.2806 24 6 -1.3402 -2.5205 2.6213 25 6 -0.2429 -2.8818 3.3105 26 8 0.7976 -2.9199 2.4622 27 1 -0.4850 0.8400 0.0004 28 1 1.4160 -7.1005 0.7679 29 1 3.1473 -7.7261 0.6536 30 1 4.2516 -8.0609 -1.6655 31 1 2.3253 -7.5070 -4.0779 32 1 4.0565 -8.1321 -4.1938 33 1 3.4163 -10.1623 -2.8145 34 1 1.6850 -9.5377 -2.6981 35 1 -1.5662 -2.0298 0.4549 36 1 -2.3385 -2.4030 3.0162 37 1 -0.2058 -3.1069 4.3661 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346706902.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:22 Heat of formation + Delta-G solvation = -39.316338 kcal Electronic energy + Delta-G solvation = -21078.712671 eV Core-core repulsion = 17788.982261 eV Total energy + Delta-G solvation = -3289.730410 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.20726 -41.50283 -39.27611 -37.55783 -35.99512 -35.30485 -33.57573 -31.64062 -28.69301 -26.71253 -24.80189 -24.34186 -23.13813 -22.44297 -21.80351 -21.10241 -20.86703 -19.09961 -18.57592 -18.34559 -17.31664 -16.80960 -16.77417 -16.45195 -16.31717 -15.53935 -14.88083 -14.77222 -14.28644 -13.79750 -13.70564 -13.51894 -13.44427 -13.13724 -13.08222 -12.81568 -12.49971 -12.29556 -12.25461 -12.17616 -12.07812 -11.88468 -11.44496 -11.37880 -11.01389 -10.82429 -10.54501 -10.48690 -9.14706 -8.26267 -6.55576 1.06558 1.11962 1.38072 1.42884 1.49797 1.78614 2.07236 2.35439 2.38753 2.56509 2.98698 3.19761 3.50374 3.63324 3.78463 4.01058 4.16833 4.19925 4.28552 4.31460 4.36879 4.37548 4.53353 4.63064 4.75394 4.84560 4.92327 5.06608 5.12384 5.13543 5.29116 5.31371 5.35888 5.39185 5.42482 5.64381 5.79774 5.92711 6.45678 6.54858 6.88164 7.16590 8.70867 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019524 B = 0.004959 C = 0.004274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.784084 B = 5645.457863 C = 6550.395734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.560 4.560 8 H 0.074 0.926 9 C 0.300 3.700 10 H 0.040 0.960 11 O -0.355 6.355 12 C 0.474 3.526 13 O -0.551 6.551 14 C -0.176 4.176 15 H 0.154 0.846 16 C -0.122 4.122 17 C -0.082 4.082 18 H 0.095 0.905 19 C -0.131 4.131 20 C -0.187 4.187 21 C -0.160 4.160 22 C -0.004 4.004 23 C -0.193 4.193 24 C -0.227 4.227 25 C -0.069 4.069 26 O -0.195 6.195 27 H 0.271 0.729 28 H 0.089 0.911 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.080 0.920 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.167 0.833 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 -14.247 0.852 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.597 4.597 8 H 0.092 0.908 9 C 0.246 3.754 10 H 0.057 0.943 11 O -0.271 6.271 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.194 4.194 15 H 0.172 0.828 16 C -0.159 4.159 17 C -0.100 4.100 18 H 0.113 0.887 19 C -0.149 4.149 20 C -0.224 4.224 21 C -0.197 4.197 22 C -0.054 4.054 23 C -0.213 4.213 24 C -0.246 4.246 25 C -0.135 4.135 26 O -0.092 6.092 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.165 0.835 30 H 0.146 0.854 31 H 0.098 0.902 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.110 0.890 35 H 0.139 0.861 36 H 0.184 0.816 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 5.078 -14.178 0.775 15.080 hybrid contribution -0.613 1.560 -0.222 1.691 sum 4.465 -12.618 0.553 13.396 Atomic orbital electron populations 1.70161 1.07263 1.28615 1.46543 1.25848 0.96053 1.02843 0.93097 0.85245 0.78181 0.76719 0.79373 1.18676 1.20046 1.19314 1.21128 0.94171 0.88752 1.55622 0.90786 1.18760 0.85686 0.82706 0.88202 0.94267 1.86528 1.48064 1.22501 1.69972 1.23576 0.86319 0.84642 0.73472 1.90569 1.24603 1.83794 1.45335 1.21930 0.99827 0.85308 1.12366 0.82833 1.23218 1.04346 0.94934 0.93383 1.21886 0.99436 0.93833 0.94848 0.88708 1.21756 0.98989 0.99978 0.94130 1.23034 1.03851 1.02340 0.93135 1.23027 1.02440 0.91792 1.02430 1.23293 0.94462 1.02493 0.85194 1.21288 0.94556 1.07111 0.98361 1.22040 1.01086 1.08163 0.93285 1.24712 0.84564 1.07098 0.97169 1.83962 1.38298 1.68833 1.18076 0.91969 0.89260 0.83538 0.85400 0.90186 0.87088 0.86423 0.88987 0.86110 0.81570 0.74233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.23 10.95 21.45 0.23 -51.00 16 2 C 0.02 1.39 5.30 84.65 0.45 1.84 16 3 Si 0.98 43.43 29.54 68.60 2.03 45.46 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.56 -32.56 8.89 25.60 0.23 -32.34 16 8 H 0.07 4.20 7.81 -2.91 -0.02 4.18 16 9 C 0.30 17.16 2.42 29.11 0.07 17.23 16 10 H 0.04 2.48 7.15 -2.39 -0.02 2.47 16 11 O -0.35 -18.15 9.85 -49.43 -0.49 -18.63 16 12 C 0.47 21.23 7.71 71.24 0.55 21.78 16 13 O -0.55 -27.91 15.48 21.97 0.34 -27.57 16 14 C -0.18 -5.43 6.02 -11.54 -0.07 -5.49 16 15 H 0.15 4.03 8.14 -2.39 -0.02 4.01 16 16 C -0.12 -2.92 9.95 30.58 0.30 -2.61 16 17 C -0.08 -2.09 5.36 -10.81 -0.06 -2.15 16 18 H 0.09 2.88 7.67 -2.39 -0.02 2.86 16 19 C -0.13 -2.44 5.85 -10.80 -0.06 -2.50 16 20 C -0.19 -3.43 10.25 30.59 0.31 -3.12 16 21 C -0.16 -2.49 10.25 30.59 0.31 -2.17 16 22 C 0.00 -0.21 5.53 24.84 0.14 -0.07 16 23 C -0.19 -10.06 9.17 22.19 0.20 -9.86 16 24 C -0.23 -9.51 10.91 22.19 0.24 -9.26 16 25 C -0.07 -2.72 12.09 66.97 0.81 -1.91 16 26 O -0.19 -9.68 10.65 -1.12 -0.01 -9.69 16 27 H 0.27 14.68 8.31 -92.71 -0.77 13.90 16 28 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 29 H 0.15 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 33 H 0.12 1.31 8.14 -2.38 -0.02 1.30 16 34 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.12 6.63 7.87 -2.91 -0.02 6.60 16 36 H 0.17 5.61 8.06 -2.91 -0.02 5.59 16 37 H 0.24 6.36 8.06 -2.91 -0.02 6.33 16 Total: -1.00 -72.28 327.54 6.60 -65.68 By element: Atomic # 1 Polarization: 25.33 SS G_CDS: 1.07 Total: 26.40 kcal Atomic # 6 Polarization: -34.07 SS G_CDS: 3.43 Total: -30.64 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.23 Total: -51.00 kcal Atomic # 8 Polarization: -55.74 SS G_CDS: -0.16 Total: -55.89 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -72.28 6.60 -65.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346706902.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.363 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds