Wall clock time and date at job start Mon Mar 30 2020 01:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48499 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47163 * 300.00295 * 3 2 1 6 6 H 1.48495 * 109.47022 * 60.00488 * 3 2 1 7 7 C 1.37877 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00246 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47010 * 299.99963 * 9 7 2 11 11 O 1.45201 * 109.46991 * 180.02562 * 9 7 2 12 12 C 1.34230 * 116.99739 * 149.99937 * 11 9 7 13 13 O 1.20832 * 120.00041 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00165 * 179.97438 * 12 11 9 15 15 H 1.08995 * 109.63799 * 299.58168 * 14 12 11 16 16 C 1.53021 * 109.64226 * 60.00025 * 14 12 11 17 17 C 1.50062 * 110.14785 * 169.12082 * 16 14 12 18 18 C 1.29439 * 124.07776 * 342.87098 * 17 16 14 19 19 C 1.50074 * 124.07336 * 0.44709 * 18 17 16 20 20 C 1.53009 * 110.15422 * 342.90258 * 19 18 17 21 21 C 1.50703 * 109.47127 * 60.00066 * 9 7 2 22 22 C 1.34507 * 125.78834 * 264.71475 * 21 9 7 23 23 C 1.41386 * 106.84010 * 180.26118 * 22 21 9 24 24 C 1.34511 * 106.84141 * 0.02562 * 23 22 21 25 25 O 1.34304 * 125.78797 * 85.02654 * 21 9 7 26 26 H 0.97003 * 120.00233 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.35844 * 289.33088 * 16 14 12 28 28 H 1.08998 * 109.35677 * 49.05229 * 16 14 12 29 29 H 1.08003 * 117.96279 * 162.88866 * 17 16 14 30 30 H 1.08001 * 117.96451 * 180.46429 * 18 17 16 31 31 H 1.08994 * 109.36127 * 103.09972 * 19 18 17 32 32 H 1.09000 * 109.35376 * 222.82041 * 19 18 17 33 33 H 1.09002 * 109.62488 * 289.72997 * 20 19 18 34 34 H 1.08996 * 109.64380 * 169.10185 * 20 19 18 35 35 H 1.08004 * 126.58507 * 0.26980 * 22 21 9 36 36 H 1.08000 * 126.57862 * 179.97438 * 23 22 21 37 37 H 1.08000 * 125.79478 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 2.1947 -3.6027 -0.0005 12 6 1.8035 -4.7390 0.5975 13 8 0.7089 -4.8090 1.1046 14 6 2.7293 -5.9275 0.6365 15 1 2.9650 -6.2417 -0.3802 16 6 4.0182 -5.5516 1.3706 17 6 4.8315 -6.7814 1.6498 18 6 4.3614 -7.9867 1.6081 19 6 2.9397 -8.3233 1.2653 20 6 2.0577 -7.0796 1.3943 21 6 0.3842 -2.5788 -1.2307 22 6 -0.9158 -2.2404 -1.3001 23 6 -1.3299 -2.4767 -2.6312 24 6 -0.2584 -2.9458 -3.2953 25 8 0.7772 -3.0051 -2.4422 26 1 -0.4850 0.8400 0.0004 27 1 4.5992 -4.8667 0.7529 28 1 3.7683 -5.0645 2.3131 29 1 5.8739 -6.6528 1.9015 30 1 5.0341 -8.8007 1.8344 31 1 2.8930 -8.6944 0.2415 32 1 2.5767 -9.0936 1.9457 33 1 1.9514 -6.8137 2.4461 34 1 1.0769 -7.2796 0.9628 35 1 -1.5261 -1.8610 -0.4939 36 1 -2.3174 -2.3128 -3.0366 37 1 -0.2347 -3.2269 -4.3378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346719869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:13 Heat of formation + Delta-G solvation = -67.621740 kcal Electronic energy + Delta-G solvation = -21520.389175 eV Core-core repulsion = 18229.431352 eV Total energy + Delta-G solvation = -3290.957824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34036 -39.93653 -37.86964 -35.65805 -33.31247 -31.68070 -31.37019 -30.76203 -29.51119 -26.68108 -24.29327 -23.21280 -22.45973 -20.63250 -20.06859 -19.22788 -17.90383 -17.29501 -16.64901 -16.57891 -15.79861 -15.24807 -14.92857 -14.68545 -14.43888 -13.85589 -13.54731 -13.20439 -13.06138 -12.66632 -12.35016 -12.22515 -11.86182 -11.76146 -11.56429 -11.30312 -11.11737 -10.98560 -10.88109 -10.70881 -10.36482 -10.31021 -10.08578 -9.55156 -9.39414 -9.00383 -8.83098 -8.63921 -7.24027 -6.21305 -4.40322 2.27305 2.88309 2.92624 3.20000 3.26404 3.30716 3.53848 3.96414 4.19138 4.26898 4.70177 4.74760 5.00909 5.06695 5.24171 5.30868 5.43906 5.54533 5.56169 5.79098 5.83804 5.88140 5.98931 6.06355 6.10517 6.22947 6.35204 6.40096 6.62158 6.73775 6.92754 7.00432 7.18281 7.25101 7.41004 7.69618 7.73242 7.86475 8.37117 8.52566 8.79603 9.26806 10.76183 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.005719 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.683221 B = 4894.880974 C = 5871.586032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.297 3.703 10 H 0.077 0.923 11 O -0.347 6.347 12 C 0.457 3.543 13 O -0.516 6.516 14 C -0.080 4.080 15 H 0.104 0.896 16 C -0.083 4.083 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.090 4.090 20 C -0.104 4.104 21 C 0.022 3.978 22 C -0.176 4.176 23 C -0.218 4.218 24 C -0.090 4.090 25 O -0.179 6.179 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -11.625 0.229 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.566 4.566 8 H 0.096 0.904 9 C 0.244 3.756 10 H 0.095 0.905 11 O -0.262 6.262 12 C 0.300 3.700 13 O -0.405 6.405 14 C -0.099 4.099 15 H 0.123 0.877 16 C -0.120 4.120 17 C -0.164 4.164 18 C -0.182 4.182 19 C -0.127 4.127 20 C -0.142 4.142 21 C -0.029 4.029 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.158 4.158 25 O -0.076 6.076 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.786 -11.562 0.309 12.517 hybrid contribution -0.076 1.202 -0.278 1.236 sum 4.710 -10.360 0.032 11.380 Atomic orbital electron populations 1.70041 1.05940 1.27509 1.46771 1.24948 0.95131 0.99572 0.94044 0.86183 0.80019 0.81996 0.77803 1.19274 1.20680 1.20546 1.20939 0.94170 0.87578 1.53869 0.90368 1.19182 0.85697 0.81947 0.88787 0.90510 1.86547 1.48294 1.22020 1.69383 1.23456 0.86596 0.84959 0.75010 1.90607 1.22778 1.83319 1.43777 1.21063 0.94731 0.91756 1.02398 0.87748 1.20411 0.93929 0.96615 1.01088 1.22053 0.99600 0.94160 1.00604 1.22050 0.97119 0.97042 1.01958 1.20469 0.92583 0.97802 1.01808 1.21500 0.98674 0.92854 1.01128 1.23577 0.94426 0.99692 0.85212 1.21293 0.95135 1.06066 0.97063 1.21718 0.99284 1.07140 0.95652 1.23597 0.86670 1.09756 0.95757 1.83987 1.37487 1.66858 1.19228 0.92215 0.89254 0.90131 0.87596 0.88021 0.90784 0.90769 0.90936 0.90536 0.83685 0.85168 0.79917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 10.50 55.43 0.58 -23.34 16 2 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 3 Si 0.91 20.84 29.54 -169.99 -5.02 15.81 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -14.55 8.89 -34.44 -0.31 -14.86 16 8 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 9 C 0.30 7.90 2.41 -29.03 -0.07 7.83 16 10 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 11 O -0.35 -8.18 9.77 -42.04 -0.41 -8.59 16 12 C 0.46 9.47 7.21 36.01 0.26 9.73 16 13 O -0.52 -11.99 15.11 -18.75 -0.28 -12.28 16 14 C -0.08 -1.23 2.69 -91.56 -0.25 -1.47 16 15 H 0.10 1.48 8.13 -51.93 -0.42 1.06 16 16 C -0.08 -1.13 5.37 -28.18 -0.15 -1.28 16 17 C -0.15 -1.63 9.80 -35.90 -0.35 -1.98 16 18 C -0.16 -1.69 9.80 -35.90 -0.35 -2.04 16 19 C -0.09 -0.93 6.12 -28.18 -0.17 -1.10 16 20 C -0.10 -1.39 4.70 -26.52 -0.12 -1.52 16 21 C 0.02 0.57 5.67 -35.63 -0.20 0.37 16 22 C -0.18 -4.44 9.05 -39.70 -0.36 -4.80 16 23 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 24 C -0.09 -1.88 12.09 29.41 0.36 -1.53 16 25 O -0.18 -4.42 10.63 2.07 0.02 -4.40 16 26 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 29 H 0.11 1.01 8.06 -52.48 -0.42 0.59 16 30 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 35 H 0.15 3.76 7.50 -52.48 -0.39 3.37 16 36 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 37 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 316.54 15.07 4.77 4.77 Total: -1.00 -30.69 316.54 -7.53 -38.22 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -4.94 Total: 5.85 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -2.25 Total: -16.05 kcal Atomic # 7 Polarization: -23.92 SS G_CDS: 0.58 Total: -23.34 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.67 Total: -25.27 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.69 -7.53 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.401 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds