Wall clock time and date at job start Mon Mar 30 2020 01:45:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99775 * 2 1 4 4 H 1.48499 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47163 * 300.00295 * 3 2 1 6 6 H 1.48495 * 109.47022 * 60.00488 * 3 2 1 7 7 C 1.37877 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99528 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00246 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47010 * 299.99963 * 9 7 2 11 11 O 1.45201 * 109.46991 * 180.02562 * 9 7 2 12 12 C 1.34230 * 116.99739 * 149.99937 * 11 9 7 13 13 O 1.20832 * 120.00041 * 359.97438 * 12 11 9 14 14 C 1.50703 * 120.00165 * 179.97438 * 12 11 9 15 15 H 1.08995 * 109.63799 * 299.58168 * 14 12 11 16 16 C 1.53021 * 109.64226 * 60.00025 * 14 12 11 17 17 C 1.50062 * 110.14785 * 169.12082 * 16 14 12 18 18 C 1.29439 * 124.07776 * 342.87098 * 17 16 14 19 19 C 1.50074 * 124.07336 * 0.44709 * 18 17 16 20 20 C 1.53009 * 110.15422 * 342.90258 * 19 18 17 21 21 C 1.50703 * 109.47127 * 60.00066 * 9 7 2 22 22 C 1.34507 * 125.78834 * 264.71475 * 21 9 7 23 23 C 1.41386 * 106.84010 * 180.26118 * 22 21 9 24 24 C 1.34511 * 106.84141 * 0.02562 * 23 22 21 25 25 O 1.34304 * 125.78797 * 85.02654 * 21 9 7 26 26 H 0.97003 * 120.00233 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.35844 * 289.33088 * 16 14 12 28 28 H 1.08998 * 109.35677 * 49.05229 * 16 14 12 29 29 H 1.08003 * 117.96279 * 162.88866 * 17 16 14 30 30 H 1.08001 * 117.96451 * 180.46429 * 18 17 16 31 31 H 1.08994 * 109.36127 * 103.09972 * 19 18 17 32 32 H 1.09000 * 109.35376 * 222.82041 * 19 18 17 33 33 H 1.09002 * 109.62488 * 289.72997 * 20 19 18 34 34 H 1.08996 * 109.64380 * 169.10185 * 20 19 18 35 35 H 1.08004 * 126.58507 * 0.26980 * 22 21 9 36 36 H 1.08000 * 126.57862 * 179.97438 * 23 22 21 37 37 H 1.08000 * 125.79478 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 8 2.1947 -3.6027 -0.0005 12 6 1.8035 -4.7390 0.5975 13 8 0.7089 -4.8090 1.1046 14 6 2.7293 -5.9275 0.6365 15 1 2.9650 -6.2417 -0.3802 16 6 4.0182 -5.5516 1.3706 17 6 4.8315 -6.7814 1.6498 18 6 4.3614 -7.9867 1.6081 19 6 2.9397 -8.3233 1.2653 20 6 2.0577 -7.0796 1.3943 21 6 0.3842 -2.5788 -1.2307 22 6 -0.9158 -2.2404 -1.3001 23 6 -1.3299 -2.4767 -2.6312 24 6 -0.2584 -2.9458 -3.2953 25 8 0.7772 -3.0051 -2.4422 26 1 -0.4850 0.8400 0.0004 27 1 4.5992 -4.8667 0.7529 28 1 3.7683 -5.0645 2.3131 29 1 5.8739 -6.6528 1.9015 30 1 5.0341 -8.8007 1.8344 31 1 2.8930 -8.6944 0.2415 32 1 2.5767 -9.0936 1.9457 33 1 1.9514 -6.8137 2.4461 34 1 1.0769 -7.2796 0.9628 35 1 -1.5261 -1.8610 -0.4939 36 1 -2.3174 -2.3128 -3.0366 37 1 -0.2347 -3.2269 -4.3378 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:13 Heat of formation + Delta-G solvation = -83.783392 kcal Electronic energy + Delta-G solvation = -21521.089997 eV Core-core repulsion = 18229.431352 eV Total energy + Delta-G solvation = -3291.658646 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.19352 -41.55903 -39.08952 -37.46154 -35.33085 -33.54123 -32.57370 -31.76798 -31.32062 -28.61880 -25.83898 -24.60220 -23.82217 -22.41513 -21.74506 -21.00194 -19.16938 -18.88119 -18.47628 -18.22999 -17.37349 -16.87033 -16.66204 -16.40002 -16.09409 -15.00440 -14.86757 -14.70476 -14.36947 -14.21240 -13.78241 -13.52744 -13.51903 -13.31493 -13.23977 -13.10053 -12.99044 -12.83309 -12.22307 -12.06402 -12.03566 -11.78368 -11.44957 -11.35940 -11.06128 -10.83226 -10.52404 -9.85329 -9.12651 -8.24584 -6.54576 1.09029 1.23955 1.38653 1.40024 1.45343 1.52972 1.86013 2.09855 2.37745 2.41008 2.99641 3.54222 3.70949 3.82240 4.09626 4.21553 4.26498 4.37076 4.39315 4.41718 4.57212 4.60866 4.66272 4.74337 4.90605 5.02634 5.07003 5.14742 5.23044 5.30337 5.33790 5.40888 5.46202 5.65968 5.78681 5.82989 5.94726 6.07922 6.46970 6.56630 6.89588 7.17648 8.71404 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018604 B = 0.005719 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.683221 B = 4894.880974 C = 5871.586032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.300 3.700 10 H 0.039 0.961 11 O -0.354 6.354 12 C 0.450 3.550 13 O -0.548 6.548 14 C -0.073 4.073 15 H 0.121 0.879 16 C -0.081 4.081 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.086 4.086 20 C -0.102 4.102 21 C -0.009 4.009 22 C -0.191 4.191 23 C -0.229 4.229 24 C -0.070 4.070 25 O -0.196 6.196 26 H 0.271 0.729 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.166 0.834 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.230 -12.788 -1.159 14.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.591 4.591 8 H 0.093 0.907 9 C 0.246 3.754 10 H 0.057 0.943 11 O -0.270 6.270 12 C 0.294 3.706 13 O -0.439 6.439 14 C -0.092 4.092 15 H 0.138 0.862 16 C -0.118 4.118 17 C -0.178 4.178 18 C -0.171 4.171 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.059 4.059 22 C -0.211 4.211 23 C -0.248 4.248 24 C -0.137 4.137 25 O -0.093 6.093 26 H 0.080 0.920 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.148 0.852 31 H 0.107 0.893 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.143 0.857 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 6.025 -12.747 -1.071 14.140 hybrid contribution -0.562 1.482 0.130 1.590 sum 5.463 -11.265 -0.941 12.555 Atomic orbital electron populations 1.70174 1.07239 1.28396 1.46771 1.25840 0.96048 1.02826 0.93229 0.85152 0.78936 0.77413 0.78062 1.18534 1.20241 1.19561 1.21181 0.94157 0.88693 1.55088 0.90732 1.18755 0.85662 0.82868 0.88114 0.94311 1.86541 1.47868 1.22552 1.70088 1.24685 0.87101 0.85223 0.73544 1.90578 1.24551 1.83727 1.45020 1.21259 0.94424 0.89560 1.03958 0.86160 1.20373 0.93219 0.98184 1.00043 1.22019 1.00235 0.93198 1.02308 1.22301 0.97202 0.97443 1.00153 1.20517 0.92060 0.96323 1.03383 1.21520 0.98898 0.93645 0.99939 1.23360 0.94806 1.01913 0.85867 1.21363 0.94998 1.06149 0.98571 1.22067 1.01395 1.07388 0.93921 1.24695 0.85038 1.06778 0.97165 1.83959 1.39045 1.67188 1.19124 0.92010 0.89787 0.91559 0.85622 0.85166 0.89309 0.88629 0.92037 0.91657 0.85682 0.81673 0.74294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.71 10.50 21.45 0.23 -50.49 16 2 C 0.02 1.31 5.30 84.65 0.45 1.76 16 3 Si 0.98 43.16 29.54 68.60 2.03 45.19 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.55 -31.79 8.89 25.60 0.23 -31.57 16 8 H 0.07 4.19 7.81 -2.91 -0.02 4.16 16 9 C 0.30 16.89 2.41 29.10 0.07 16.96 16 10 H 0.04 2.43 7.15 -2.39 -0.02 2.41 16 11 O -0.35 -17.66 9.77 -48.76 -0.48 -18.13 16 12 C 0.45 19.62 7.21 71.24 0.51 20.13 16 13 O -0.55 -27.18 15.11 21.94 0.33 -26.85 16 14 C -0.07 -2.25 2.69 -11.40 -0.03 -2.28 16 15 H 0.12 3.33 8.13 -2.39 -0.02 3.31 16 16 C -0.08 -2.20 5.37 29.66 0.16 -2.04 16 17 C -0.16 -3.23 9.80 27.04 0.27 -2.96 16 18 C -0.15 -2.66 9.80 27.04 0.27 -2.39 16 19 C -0.09 -1.55 6.12 29.66 0.18 -1.37 16 20 C -0.10 -2.71 4.70 30.73 0.14 -2.56 16 21 C -0.01 -0.49 5.67 24.83 0.14 -0.35 16 22 C -0.19 -9.93 9.05 22.19 0.20 -9.73 16 23 C -0.23 -9.60 10.91 22.19 0.24 -9.36 16 24 C -0.07 -2.76 12.09 66.97 0.81 -1.96 16 25 O -0.20 -9.66 10.63 0.96 0.01 -9.65 16 26 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.07 1.94 8.10 -2.39 -0.02 1.92 16 29 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 30 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.06 1.86 7.89 -2.39 -0.02 1.84 16 35 H 0.13 6.88 7.50 -2.91 -0.02 6.86 16 36 H 0.17 5.61 8.06 -2.91 -0.02 5.59 16 37 H 0.24 6.34 8.06 -2.91 -0.02 6.31 16 Total: -1.00 -70.31 316.54 6.81 -63.49 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 1.06 Total: 24.15 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 3.64 Total: -27.71 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.23 Total: -50.49 kcal Atomic # 8 Polarization: -54.50 SS G_CDS: -0.13 Total: -54.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.31 6.81 -63.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.290 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds