Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48503 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47128 * 300.00008 * 3 2 1 6 6 H 1.48497 * 109.47574 * 60.00036 * 3 2 1 7 7 C 1.37873 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.47363 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47117 * 299.99546 * 9 7 2 12 12 C 1.34228 * 117.00258 * 270.00060 * 11 9 7 13 13 O 1.20834 * 119.99670 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00490 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.64027 * 59.99930 * 14 12 11 16 16 C 1.53024 * 109.63886 * 299.57984 * 14 12 11 17 17 C 1.50065 * 110.14517 * 190.66549 * 16 14 12 18 18 C 1.29448 * 124.08023 * 17.12959 * 17 16 14 19 19 C 1.50071 * 124.07067 * 359.51187 * 18 17 16 20 20 C 1.53038 * 110.13828 * 17.16845 * 19 18 17 21 21 C 1.50696 * 109.47419 * 59.99819 * 9 7 2 22 22 C 1.34518 * 125.79420 * 99.71561 * 21 9 7 23 23 C 1.41379 * 106.84269 * 179.89152 * 22 21 9 24 24 C 1.34512 * 106.84067 * 0.37088 * 23 22 21 25 25 O 1.34303 * 108.42485 * 359.77084 * 24 23 22 26 26 H 0.97006 * 119.99785 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.36289 * 310.87231 * 16 14 12 28 28 H 1.09003 * 109.35532 * 70.45987 * 16 14 12 29 29 H 1.08003 * 117.96625 * 197.10916 * 17 16 14 30 30 H 1.07990 * 117.96661 * 179.52819 * 18 17 16 31 31 H 1.08998 * 109.35753 * 137.35560 * 19 18 17 32 32 H 1.08996 * 109.35601 * 257.07975 * 19 18 17 33 33 H 1.09005 * 109.63741 * 190.86283 * 20 19 18 34 34 H 1.08999 * 109.66487 * 70.22162 * 20 19 18 35 35 H 1.07998 * 126.57585 * 0.02562 * 22 21 9 36 36 H 1.08002 * 126.57994 * 180.16588 * 23 22 21 37 37 H 1.08006 * 125.79241 * 179.75133 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 1.9592 -3.3277 0.0005 11 8 0.4158 -2.5758 1.1858 12 6 0.9620 -3.1257 2.2816 13 8 2.1006 -3.5293 2.2516 14 6 0.1554 -3.2399 3.5495 15 1 -0.7309 -3.8473 3.3664 16 6 -0.2647 -1.8454 4.0191 17 6 -0.8390 -1.9175 5.4036 18 6 -0.6732 -2.9193 6.2064 19 6 0.1080 -4.1532 5.8609 20 6 1.0056 -3.8868 4.6503 21 6 0.3850 -2.5792 -1.2302 22 6 0.6794 -3.2526 -2.3569 23 6 -0.4043 -3.0600 -3.2442 24 6 -1.2924 -2.2737 -2.6098 25 8 -0.8092 -1.9856 -1.3903 26 1 -0.4850 0.8401 0.0004 27 1 0.6048 -1.1880 4.0225 28 1 -1.0149 -1.4453 3.3370 29 1 -1.4272 -1.0814 5.7521 30 1 -1.1252 -2.8639 7.1856 31 1 0.7255 -4.4400 6.7121 32 1 -0.5819 -4.9636 5.6257 33 1 1.4203 -4.8274 4.2877 34 1 1.8131 -3.2119 4.9339 35 1 1.5714 -3.8312 -2.5463 36 1 -0.4992 -3.4637 -4.2414 37 1 -2.2343 -1.9318 -3.0129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346719870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = -62.589061 kcal Electronic energy + Delta-G solvation = -21760.063180 eV Core-core repulsion = 18469.323589 eV Total energy + Delta-G solvation = -3290.739591 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.29803 -39.62278 -37.62835 -35.33902 -32.93377 -31.83014 -31.14358 -30.58040 -29.68567 -26.53415 -24.12314 -23.12533 -22.40870 -20.64602 -19.63765 -19.39020 -17.71235 -17.09502 -16.50962 -16.48175 -15.63175 -14.98256 -14.75033 -14.48442 -14.38776 -13.76016 -13.36304 -13.11110 -12.97361 -12.51078 -12.12743 -12.04345 -11.82336 -11.76147 -11.56517 -11.32656 -11.04817 -10.98586 -10.68604 -10.51112 -10.34221 -10.11781 -9.80779 -9.34901 -9.01797 -8.82927 -8.82597 -8.73931 -7.34575 -6.21833 -4.43057 2.43897 2.91352 3.18147 3.26589 3.28076 3.32691 3.56739 3.94319 4.25405 4.28826 4.90015 4.92754 5.08811 5.19881 5.45328 5.49091 5.60850 5.68397 5.72109 5.86168 5.95345 5.98664 6.03232 6.18781 6.30782 6.39995 6.44881 6.49258 6.56020 6.78887 6.81303 6.90818 7.11413 7.21873 7.48898 7.63624 7.80764 7.84204 8.43075 8.60434 9.01829 9.30470 10.77084 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006536 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.250623 B = 4282.879200 C = 5084.865723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.277 3.723 10 H 0.070 0.930 11 O -0.333 6.333 12 C 0.463 3.537 13 O -0.531 6.531 14 C -0.080 4.080 15 H 0.098 0.902 16 C -0.081 4.081 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.088 4.088 20 C -0.103 4.103 21 C 0.080 3.920 22 C -0.267 4.267 23 C -0.222 4.222 24 C -0.083 4.083 25 O -0.111 6.111 26 H 0.266 0.734 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -4.675 6.086 8.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.130 4.130 3 Si 0.721 3.279 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.583 4.583 8 H 0.092 0.908 9 C 0.225 3.775 10 H 0.088 0.912 11 O -0.247 6.247 12 C 0.306 3.694 13 O -0.422 6.422 14 C -0.099 4.099 15 H 0.116 0.884 16 C -0.118 4.118 17 C -0.159 4.159 18 C -0.188 4.188 19 C -0.125 4.125 20 C -0.140 4.140 21 C 0.027 3.973 22 C -0.286 4.286 23 C -0.241 4.241 24 C -0.152 4.152 25 O -0.003 6.003 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.031 -4.477 6.238 8.672 hybrid contribution 0.496 1.008 -0.465 1.216 sum -3.535 -3.469 5.773 7.606 Atomic orbital electron populations 1.70055 1.05631 1.27083 1.42882 1.25143 0.94999 0.99661 0.93219 0.86482 0.80542 0.82962 0.77891 1.19314 1.20595 1.20498 1.21279 0.93457 0.89311 1.54269 0.90845 1.18770 0.84770 0.98220 0.75730 0.91237 1.86723 1.47403 1.70246 1.20366 1.23163 0.86155 0.73971 0.86114 1.90535 1.19411 1.47347 1.84952 1.21028 0.98933 0.99087 0.90877 0.88378 1.20364 1.01937 0.95353 0.94154 1.22123 0.99623 0.98418 0.95732 1.22006 1.01268 0.96269 0.99250 1.20454 0.97801 0.96264 0.97966 1.21484 0.97486 1.01566 0.93504 1.22827 0.84757 0.91995 0.97764 1.21194 1.02104 1.09851 0.95456 1.21487 0.96281 1.05493 1.00875 1.23816 1.00848 1.03614 0.86939 1.84476 1.29683 1.56078 1.30023 0.92382 0.90174 0.89061 0.87841 0.88248 0.91016 0.91019 0.90806 0.91065 0.84997 0.85206 0.80066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.27 10.45 55.43 0.58 -21.69 16 2 C 0.08 2.15 5.24 -17.82 -0.09 2.06 16 3 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.55 -15.01 8.90 -34.44 -0.31 -15.31 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.28 7.19 2.58 -29.04 -0.07 7.11 16 10 H 0.07 1.78 7.15 -51.92 -0.37 1.41 16 11 O -0.33 -8.30 9.20 -41.28 -0.38 -8.68 16 12 C 0.46 10.26 7.20 36.01 0.26 10.52 16 13 O -0.53 -12.81 15.14 -18.76 -0.28 -13.09 16 14 C -0.08 -1.37 2.68 -91.55 -0.25 -1.62 16 15 H 0.10 1.54 8.12 -51.93 -0.42 1.12 16 16 C -0.08 -1.35 5.37 -28.18 -0.15 -1.50 16 17 C -0.14 -1.90 9.80 -35.90 -0.35 -2.25 16 18 C -0.17 -2.06 9.80 -35.90 -0.35 -2.41 16 19 C -0.09 -1.03 6.12 -28.17 -0.17 -1.21 16 20 C -0.10 -1.53 4.71 -26.51 -0.12 -1.65 16 21 C 0.08 2.00 5.68 -35.63 -0.20 1.80 16 22 C -0.27 -5.93 10.80 -39.70 -0.43 -6.36 16 23 C -0.22 -4.41 10.91 -39.70 -0.43 -4.84 16 24 C -0.08 -1.69 12.09 29.41 0.36 -1.33 16 25 O -0.11 -2.76 8.63 4.45 0.04 -2.72 16 26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 28 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 29 H 0.10 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.07 1.10 7.91 -51.93 -0.41 0.69 16 34 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 35 H 0.13 2.66 8.06 -52.49 -0.42 2.24 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 37 H 0.18 2.91 8.06 -52.48 -0.42 2.49 16 LS Contribution 316.40 15.07 4.77 4.77 Total: -1.00 -30.18 316.40 -7.59 -37.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.97 Total: 4.94 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -2.32 Total: -16.99 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.58 Total: -21.69 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.63 Total: -24.50 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.18 -7.59 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.812 kcal (2) G-P(sol) polarization free energy of solvation -30.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds