Wall clock time and date at job start Mon Mar 30 2020 01:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48503 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47128 * 300.00008 * 3 2 1 6 6 H 1.48497 * 109.47574 * 60.00036 * 3 2 1 7 7 C 1.37873 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00001 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99973 * 0.02562 * 7 2 1 10 10 H 1.09009 * 109.47363 * 179.97438 * 9 7 2 11 11 O 1.45194 * 109.47117 * 299.99546 * 9 7 2 12 12 C 1.34228 * 117.00258 * 270.00060 * 11 9 7 13 13 O 1.20834 * 119.99670 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00490 * 180.02562 * 12 11 9 15 15 H 1.09002 * 109.64027 * 59.99930 * 14 12 11 16 16 C 1.53024 * 109.63886 * 299.57984 * 14 12 11 17 17 C 1.50065 * 110.14517 * 190.66549 * 16 14 12 18 18 C 1.29448 * 124.08023 * 17.12959 * 17 16 14 19 19 C 1.50071 * 124.07067 * 359.51187 * 18 17 16 20 20 C 1.53038 * 110.13828 * 17.16845 * 19 18 17 21 21 C 1.50696 * 109.47419 * 59.99819 * 9 7 2 22 22 C 1.34518 * 125.79420 * 99.71561 * 21 9 7 23 23 C 1.41379 * 106.84269 * 179.89152 * 22 21 9 24 24 C 1.34512 * 106.84067 * 0.37088 * 23 22 21 25 25 O 1.34303 * 108.42485 * 359.77084 * 24 23 22 26 26 H 0.97006 * 119.99785 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.36289 * 310.87231 * 16 14 12 28 28 H 1.09003 * 109.35532 * 70.45987 * 16 14 12 29 29 H 1.08003 * 117.96625 * 197.10916 * 17 16 14 30 30 H 1.07990 * 117.96661 * 179.52819 * 18 17 16 31 31 H 1.08998 * 109.35753 * 137.35560 * 19 18 17 32 32 H 1.08996 * 109.35601 * 257.07975 * 19 18 17 33 33 H 1.09005 * 109.63741 * 190.86283 * 20 19 18 34 34 H 1.08999 * 109.66487 * 70.22162 * 20 19 18 35 35 H 1.07998 * 126.57585 * 0.02562 * 22 21 9 36 36 H 1.08002 * 126.57994 * 180.16588 * 23 22 21 37 37 H 1.08006 * 125.79241 * 179.75133 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 1 1.9592 -3.3277 0.0005 11 8 0.4158 -2.5758 1.1858 12 6 0.9620 -3.1257 2.2816 13 8 2.1006 -3.5293 2.2516 14 6 0.1554 -3.2399 3.5495 15 1 -0.7309 -3.8473 3.3664 16 6 -0.2647 -1.8454 4.0191 17 6 -0.8390 -1.9175 5.4036 18 6 -0.6732 -2.9193 6.2064 19 6 0.1080 -4.1532 5.8609 20 6 1.0056 -3.8868 4.6503 21 6 0.3850 -2.5792 -1.2302 22 6 0.6794 -3.2526 -2.3569 23 6 -0.4043 -3.0600 -3.2442 24 6 -1.2924 -2.2737 -2.6098 25 8 -0.8092 -1.9856 -1.3903 26 1 -0.4850 0.8401 0.0004 27 1 0.6048 -1.1880 4.0225 28 1 -1.0149 -1.4453 3.3370 29 1 -1.4272 -1.0814 5.7521 30 1 -1.1252 -2.8639 7.1856 31 1 0.7255 -4.4400 6.7121 32 1 -0.5819 -4.9636 5.6257 33 1 1.4203 -4.8274 4.2877 34 1 1.8131 -3.2119 4.9339 35 1 1.5714 -3.8312 -2.5463 36 1 -0.4992 -3.4637 -4.2414 37 1 -2.2343 -1.9318 -3.0129 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:15 Heat of formation + Delta-G solvation = -77.989746 kcal Electronic energy + Delta-G solvation = -21760.731004 eV Core-core repulsion = 18469.323589 eV Total energy + Delta-G solvation = -3291.407414 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.03986 -41.31807 -38.99364 -37.20869 -34.93418 -33.57387 -32.48848 -31.76134 -31.39515 -28.41067 -25.78612 -24.61297 -23.77859 -22.33161 -21.29410 -21.14576 -18.99276 -18.91401 -18.24120 -18.13395 -17.14490 -16.93146 -16.27532 -16.24330 -16.12807 -15.07919 -14.77837 -14.71386 -14.32858 -14.02925 -13.58880 -13.53184 -13.38809 -13.32233 -13.14948 -13.05869 -12.90783 -12.82196 -12.21611 -12.02078 -11.85281 -11.71876 -11.36916 -11.07639 -10.93476 -10.76539 -10.49526 -9.86100 -9.09375 -8.22913 -6.52904 1.16918 1.34095 1.36250 1.42768 1.46793 1.50918 1.89469 2.24946 2.32011 2.60090 3.06715 3.64842 3.76315 3.87831 4.14894 4.25394 4.34088 4.39325 4.41036 4.42724 4.47121 4.63982 4.66658 4.76377 4.94935 5.04967 5.09858 5.13016 5.23090 5.25083 5.33631 5.42869 5.56857 5.77783 5.78911 5.89694 5.99466 6.07728 6.50427 6.72136 7.12610 7.26231 8.74831 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016406 B = 0.006536 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.250623 B = 4282.879200 C = 5084.865723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.044 3.956 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.577 4.577 8 H 0.057 0.943 9 C 0.276 3.724 10 H 0.055 0.945 11 O -0.346 6.346 12 C 0.452 3.548 13 O -0.557 6.557 14 C -0.074 4.074 15 H 0.116 0.884 16 C -0.074 4.074 17 C -0.163 4.163 18 C -0.150 4.150 19 C -0.085 4.085 20 C -0.100 4.100 21 C 0.040 3.960 22 C -0.267 4.267 23 C -0.218 4.218 24 C -0.083 4.083 25 O -0.141 6.141 26 H 0.268 0.732 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -4.958 6.773 9.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.165 4.165 3 Si 0.777 3.223 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.613 4.613 8 H 0.075 0.925 9 C 0.223 3.777 10 H 0.073 0.927 11 O -0.261 6.261 12 C 0.297 3.703 13 O -0.450 6.450 14 C -0.093 4.093 15 H 0.134 0.866 16 C -0.111 4.111 17 C -0.181 4.181 18 C -0.167 4.167 19 C -0.122 4.122 20 C -0.137 4.137 21 C -0.013 4.013 22 C -0.286 4.286 23 C -0.237 4.237 24 C -0.151 4.151 25 O -0.033 6.033 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.116 0.884 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.162 0.838 36 H 0.188 0.812 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -5.404 -4.769 6.930 9.998 hybrid contribution 0.909 0.983 -0.720 1.520 sum -4.495 -3.786 6.210 8.550 Atomic orbital electron populations 1.70155 1.06427 1.27738 1.42860 1.25753 0.95860 1.02180 0.92736 0.85598 0.79064 0.79338 0.78323 1.19667 1.19693 1.19642 1.21375 0.92930 0.90896 1.56095 0.92499 1.18603 0.85324 0.97022 0.76709 0.92691 1.86706 1.47478 1.70910 1.21007 1.24271 0.86432 0.72766 0.86807 1.90500 1.20772 1.48402 1.85346 1.21187 0.99180 1.00165 0.88816 0.86590 1.20218 1.00438 0.94179 0.96297 1.22003 1.01585 1.00351 0.94130 1.22320 0.99372 0.95138 0.99898 1.20534 0.97859 0.96815 0.96976 1.21499 0.97481 1.00667 0.94090 1.22716 0.85817 0.94549 0.98232 1.21585 1.03124 1.08795 0.95109 1.21892 0.94771 1.04965 1.02096 1.24751 1.02200 1.02809 0.85374 1.84409 1.29819 1.56840 1.32264 0.92206 0.92835 0.91178 0.86267 0.85023 0.88424 0.89049 0.91087 0.92579 0.83752 0.81220 0.75904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.45 10.45 21.45 0.22 -46.23 16 2 C 0.04 2.40 5.24 84.65 0.44 2.84 16 3 Si 0.95 43.38 29.54 68.60 2.03 45.41 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.58 -33.19 8.90 25.60 0.23 -32.96 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.28 15.07 2.58 29.10 0.08 15.15 16 10 H 0.06 3.03 7.15 -2.38 -0.02 3.01 16 11 O -0.35 -18.20 9.20 -49.46 -0.46 -18.65 16 12 C 0.45 21.07 7.20 71.24 0.51 21.58 16 13 O -0.56 -28.36 15.14 21.94 0.33 -28.03 16 14 C -0.07 -2.60 2.68 -11.40 -0.03 -2.63 16 15 H 0.12 3.61 8.12 -2.39 -0.02 3.59 16 16 C -0.07 -2.53 5.37 29.66 0.16 -2.37 16 17 C -0.16 -4.15 9.80 27.03 0.27 -3.88 16 18 C -0.15 -3.11 9.80 27.03 0.27 -2.84 16 19 C -0.09 -1.72 6.12 29.66 0.18 -1.54 16 20 C -0.10 -2.90 4.71 30.74 0.14 -2.75 16 21 C 0.04 2.03 5.68 24.83 0.14 2.17 16 22 C -0.27 -11.84 10.80 22.19 0.24 -11.60 16 23 C -0.22 -8.19 10.91 22.19 0.24 -7.94 16 24 C -0.08 -3.24 12.09 66.97 0.81 -2.43 16 25 O -0.14 -7.04 8.63 -1.39 -0.01 -7.05 16 26 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 27 H 0.05 2.05 8.10 -2.39 -0.02 2.03 16 28 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.13 2.01 8.06 -2.92 -0.02 1.99 16 31 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.09 7.91 -2.38 -0.02 2.07 16 34 H 0.06 1.78 8.12 -2.39 -0.02 1.76 16 35 H 0.14 5.84 8.06 -2.91 -0.02 5.81 16 36 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 37 H 0.22 6.44 8.06 -2.91 -0.02 6.41 16 Total: -1.00 -68.32 316.40 6.85 -61.47 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.06 Total: 22.31 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 3.68 Total: -29.22 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.22 Total: -46.23 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -0.14 Total: -53.73 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.32 6.85 -61.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.524 kcal (2) G-P(sol) polarization free energy of solvation -68.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds