Wall clock time and date at job start Mon Mar 30 2020 01:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46953 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99978 * 3 2 1 7 7 C 1.37877 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47072 * 59.99764 * 9 7 2 11 11 O 1.45203 * 109.47351 * 179.97438 * 9 7 2 12 12 C 1.34230 * 116.99941 * 210.00501 * 11 9 7 13 13 O 1.20828 * 120.00130 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99771 * 180.02562 * 12 11 9 15 15 H 1.08997 * 109.63899 * 299.57581 * 14 12 11 16 16 C 1.53022 * 109.64327 * 59.99534 * 14 12 11 17 17 C 1.50070 * 110.14880 * 169.12151 * 16 14 12 18 18 C 1.29438 * 124.07052 * 342.86681 * 17 16 14 19 19 C 1.50073 * 124.07969 * 0.45032 * 18 17 16 20 20 C 1.53006 * 110.15193 * 342.90286 * 19 18 17 21 21 C 1.50702 * 109.47166 * 300.00209 * 9 7 2 22 22 C 1.34512 * 125.78762 * 99.99637 * 21 9 7 23 23 C 1.41385 * 106.83926 * 179.76997 * 22 21 9 24 24 C 1.34515 * 106.83992 * 0.23220 * 23 22 21 25 25 O 1.34305 * 125.78789 * 280.15850 * 21 9 7 26 26 H 0.97003 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.35882 * 289.32956 * 16 14 12 28 28 H 1.09001 * 109.35797 * 49.04882 * 16 14 12 29 29 H 1.07999 * 117.96182 * 162.89359 * 17 16 14 30 30 H 1.08005 * 117.95983 * 180.46940 * 18 17 16 31 31 H 1.08993 * 109.35822 * 103.09789 * 19 18 17 32 32 H 1.08996 * 109.35546 * 222.68284 * 19 18 17 33 33 H 1.09005 * 109.62828 * 289.72355 * 20 19 18 34 34 H 1.09000 * 109.64497 * 169.10193 * 20 19 18 35 35 H 1.08002 * 126.58498 * 0.04167 * 22 21 9 36 36 H 1.08002 * 126.58069 * 180.26215 * 23 22 21 37 37 H 1.08000 * 125.79123 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 2.1946 -3.6028 -0.0018 12 6 1.8029 -4.7387 -0.6001 13 8 0.7077 -4.8087 -1.1056 14 6 2.7287 -5.9272 -0.6402 15 1 3.6433 -5.6613 -1.1702 16 6 3.0691 -6.3625 0.7867 17 6 3.7670 -7.6910 0.7693 18 6 3.7574 -8.5019 -0.2395 19 6 3.0552 -8.2229 -1.5361 20 6 2.0363 -7.0963 -1.3520 21 6 0.3851 -2.5792 1.2302 22 6 -0.9350 -2.3261 1.2810 23 6 -1.3392 -2.5265 2.6210 24 6 -0.2409 -2.8851 3.3098 25 8 0.8012 -2.9125 2.4629 26 1 -0.4850 0.8401 0.0004 27 1 3.7201 -5.6184 1.2459 28 1 2.1507 -6.4467 1.3676 29 1 4.3107 -7.9890 1.6536 30 1 4.2875 -9.4378 -0.1419 31 1 3.7876 -7.9281 -2.2875 32 1 2.5410 -9.1242 -1.8697 33 1 1.2026 -7.4519 -0.7465 34 1 1.6724 -6.7686 -2.3258 35 1 -1.5661 -2.0310 0.4557 36 1 -2.3382 -2.4138 3.0156 37 1 -0.2034 -3.1129 4.3649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346719871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:17 Heat of formation + Delta-G solvation = -68.159308 kcal Electronic energy + Delta-G solvation = -21598.904393 eV Core-core repulsion = 18307.923258 eV Total energy + Delta-G solvation = -3290.981135 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.34873 -39.93878 -37.87197 -35.65939 -33.28387 -31.71083 -31.37055 -30.76120 -29.53036 -26.66854 -24.30390 -23.20457 -22.46739 -20.64625 -20.08383 -19.22243 -17.91028 -17.28085 -16.65147 -16.59726 -15.86190 -15.18695 -14.95649 -14.59602 -14.43175 -13.89450 -13.60556 -13.32288 -12.85957 -12.68144 -12.40361 -12.22073 -11.87071 -11.77284 -11.56721 -11.31696 -11.13284 -10.99819 -10.87862 -10.71051 -10.36228 -10.31051 -10.07542 -9.55128 -9.37788 -9.00499 -8.82387 -8.65537 -7.25858 -6.21754 -4.39451 2.27166 2.86710 2.92281 3.20401 3.26725 3.31163 3.53570 3.95198 4.18749 4.27657 4.69948 4.75218 4.99430 5.07677 5.24074 5.30862 5.43777 5.54843 5.55821 5.79464 5.83452 5.87203 5.99019 6.05645 6.10088 6.22607 6.34290 6.38818 6.61858 6.73145 6.92677 6.98681 7.14956 7.23096 7.40301 7.69396 7.70217 7.86583 8.36061 8.52889 8.79509 9.27567 10.77171 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.005579 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.110589 B = 5017.388284 C = 5656.564317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.296 3.704 10 H 0.078 0.922 11 O -0.347 6.347 12 C 0.457 3.543 13 O -0.515 6.515 14 C -0.080 4.080 15 H 0.106 0.894 16 C -0.083 4.083 17 C -0.146 4.146 18 C -0.164 4.164 19 C -0.090 4.090 20 C -0.104 4.104 21 C 0.028 3.972 22 C -0.180 4.180 23 C -0.217 4.217 24 C -0.089 4.089 25 O -0.176 6.176 26 H 0.268 0.732 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.454 -12.210 1.110 13.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.096 0.904 9 C 0.243 3.757 10 H 0.095 0.905 11 O -0.263 6.263 12 C 0.299 3.701 13 O -0.405 6.405 14 C -0.100 4.100 15 H 0.124 0.876 16 C -0.120 4.120 17 C -0.164 4.164 18 C -0.182 4.182 19 C -0.126 4.126 20 C -0.141 4.141 21 C -0.023 4.023 22 C -0.199 4.199 23 C -0.237 4.237 24 C -0.157 4.157 25 O -0.073 6.073 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.097 0.903 29 H 0.124 0.876 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.158 0.842 36 H 0.148 0.852 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 4.244 -12.126 1.044 12.890 hybrid contribution -0.126 1.181 0.302 1.226 sum 4.119 -10.945 1.346 11.772 Atomic orbital electron populations 1.70045 1.05919 1.27536 1.46729 1.24949 0.95125 0.99563 0.94033 0.86191 0.80032 0.82018 0.77799 1.19270 1.20553 1.20676 1.20934 0.94167 0.87585 1.54037 0.90393 1.19176 0.85797 0.81964 0.88770 0.90463 1.86553 1.48297 1.22020 1.69390 1.23461 0.86685 0.84877 0.75028 1.90606 1.22628 1.83411 1.43817 1.21065 0.98616 0.91303 0.98973 0.87630 1.20398 1.01177 0.95463 0.94942 1.22050 0.99919 0.95714 0.98716 1.22051 1.01058 0.99364 0.95692 1.20465 0.97733 0.98634 0.95815 1.21497 0.97729 0.93413 1.01509 1.23537 0.94119 1.00137 0.84532 1.21212 0.94881 1.06977 0.96837 1.21689 0.98901 1.07925 0.95174 1.23598 0.86051 1.10354 0.95664 1.83988 1.36434 1.68709 1.18158 0.92229 0.89304 0.90303 0.87618 0.88016 0.90748 0.90777 0.91017 0.90462 0.84158 0.85167 0.79904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.05 10.95 55.43 0.61 -23.45 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.65 8.89 -34.44 -0.31 -14.96 16 8 H 0.08 2.12 7.81 -52.48 -0.41 1.71 16 9 C 0.30 7.87 2.42 -29.04 -0.07 7.80 16 10 H 0.08 2.20 7.15 -51.93 -0.37 1.83 16 11 O -0.35 -8.17 9.78 -41.25 -0.40 -8.58 16 12 C 0.46 9.44 7.21 36.01 0.26 9.70 16 13 O -0.52 -11.95 15.12 -18.75 -0.28 -12.23 16 14 C -0.08 -1.22 2.69 -91.56 -0.25 -1.47 16 15 H 0.11 1.45 8.13 -51.93 -0.42 1.03 16 16 C -0.08 -1.14 5.37 -28.18 -0.15 -1.30 16 17 C -0.15 -1.65 9.80 -35.90 -0.35 -2.00 16 18 C -0.16 -1.69 9.80 -35.90 -0.35 -2.05 16 19 C -0.09 -0.92 6.12 -28.18 -0.17 -1.10 16 20 C -0.10 -1.39 4.70 -26.53 -0.12 -1.51 16 21 C 0.03 0.72 5.53 -35.62 -0.20 0.53 16 22 C -0.18 -4.50 9.17 -39.70 -0.36 -4.87 16 23 C -0.22 -4.68 10.91 -39.70 -0.43 -5.11 16 24 C -0.09 -1.84 12.09 29.42 0.36 -1.49 16 25 O -0.18 -4.32 10.65 4.56 0.05 -4.28 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.08 1.17 8.10 -51.93 -0.42 0.75 16 29 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 30 H 0.10 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 34 H 0.08 1.07 7.90 -51.93 -0.41 0.66 16 35 H 0.14 3.60 7.87 -52.49 -0.41 3.19 16 36 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 37 H 0.18 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -30.75 317.39 -7.48 -38.23 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.96 Total: 5.67 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.25 Total: -16.04 kcal Atomic # 7 Polarization: -24.05 SS G_CDS: 0.61 Total: -23.45 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.64 Total: -25.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.75 -7.48 -38.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.926 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds