Wall clock time and date at job start Mon Mar 30 2020 01:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47466 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46953 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.47060 * 59.99978 * 3 2 1 7 7 C 1.37877 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00138 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99982 * 359.97438 * 7 2 1 10 10 H 1.09004 * 109.47072 * 59.99764 * 9 7 2 11 11 O 1.45203 * 109.47351 * 179.97438 * 9 7 2 12 12 C 1.34230 * 116.99941 * 210.00501 * 11 9 7 13 13 O 1.20828 * 120.00130 * 359.97438 * 12 11 9 14 14 C 1.50703 * 119.99771 * 180.02562 * 12 11 9 15 15 H 1.08997 * 109.63899 * 299.57581 * 14 12 11 16 16 C 1.53022 * 109.64327 * 59.99534 * 14 12 11 17 17 C 1.50070 * 110.14880 * 169.12151 * 16 14 12 18 18 C 1.29438 * 124.07052 * 342.86681 * 17 16 14 19 19 C 1.50073 * 124.07969 * 0.45032 * 18 17 16 20 20 C 1.53006 * 110.15193 * 342.90286 * 19 18 17 21 21 C 1.50702 * 109.47166 * 300.00209 * 9 7 2 22 22 C 1.34512 * 125.78762 * 99.99637 * 21 9 7 23 23 C 1.41385 * 106.83926 * 179.76997 * 22 21 9 24 24 C 1.34515 * 106.83992 * 0.23220 * 23 22 21 25 25 O 1.34305 * 125.78789 * 280.15850 * 21 9 7 26 26 H 0.97003 * 119.99814 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.35882 * 289.32956 * 16 14 12 28 28 H 1.09001 * 109.35797 * 49.04882 * 16 14 12 29 29 H 1.07999 * 117.96182 * 162.89359 * 17 16 14 30 30 H 1.08005 * 117.95983 * 180.46940 * 18 17 16 31 31 H 1.08993 * 109.35822 * 103.09789 * 19 18 17 32 32 H 1.08996 * 109.35546 * 222.68284 * 19 18 17 33 33 H 1.09005 * 109.62828 * 289.72355 * 20 19 18 34 34 H 1.09000 * 109.64497 * 169.10193 * 20 19 18 35 35 H 1.08002 * 126.58498 * 0.04167 * 22 21 9 36 36 H 1.08002 * 126.58069 * 180.26215 * 23 22 21 37 37 H 1.08000 * 125.79123 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6240 -2.5566 -0.8903 11 8 2.1946 -3.6028 -0.0018 12 6 1.8029 -4.7387 -0.6001 13 8 0.7077 -4.8087 -1.1056 14 6 2.7287 -5.9272 -0.6402 15 1 3.6433 -5.6613 -1.1702 16 6 3.0691 -6.3625 0.7867 17 6 3.7670 -7.6910 0.7693 18 6 3.7574 -8.5019 -0.2395 19 6 3.0552 -8.2229 -1.5361 20 6 2.0363 -7.0963 -1.3520 21 6 0.3851 -2.5792 1.2302 22 6 -0.9350 -2.3261 1.2810 23 6 -1.3392 -2.5265 2.6210 24 6 -0.2409 -2.8851 3.3098 25 8 0.8012 -2.9125 2.4629 26 1 -0.4850 0.8401 0.0004 27 1 3.7201 -5.6184 1.2459 28 1 2.1507 -6.4467 1.3676 29 1 4.3107 -7.9890 1.6536 30 1 4.2875 -9.4378 -0.1419 31 1 3.7876 -7.9281 -2.2875 32 1 2.5410 -9.1242 -1.8697 33 1 1.2026 -7.4519 -0.7465 34 1 1.6724 -6.7686 -2.3258 35 1 -1.5661 -2.0310 0.4557 36 1 -2.3382 -2.4138 3.0156 37 1 -0.2034 -3.1129 4.3649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:16 Heat of formation + Delta-G solvation = -84.482373 kcal Electronic energy + Delta-G solvation = -21599.612214 eV Core-core repulsion = 18307.923258 eV Total energy + Delta-G solvation = -3291.688956 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.19581 -41.55956 -39.09260 -37.46089 -35.30781 -33.56665 -32.57451 -31.76847 -31.33982 -28.60765 -25.85235 -24.59574 -23.83073 -22.42548 -21.75965 -20.98789 -19.11017 -18.96703 -18.47797 -18.22786 -17.38671 -16.85347 -16.69237 -16.36952 -16.00763 -15.21492 -14.76215 -14.73893 -14.36146 -14.03251 -13.96880 -13.53035 -13.48502 -13.29090 -13.27107 -13.10645 -13.02474 -12.83788 -12.21755 -12.06551 -12.05410 -11.75666 -11.46737 -11.32640 -11.07221 -10.82787 -10.54005 -9.85974 -9.13691 -8.25814 -6.54519 1.07970 1.23900 1.38542 1.39908 1.44717 1.52944 1.85081 2.10195 2.38559 2.40716 2.99454 3.53995 3.71454 3.81169 4.10390 4.21859 4.25444 4.36982 4.38034 4.41304 4.54506 4.60631 4.65534 4.73776 4.89702 5.02454 5.06722 5.13476 5.22968 5.29774 5.31159 5.40676 5.44062 5.66075 5.78056 5.81297 5.94309 6.07386 6.47093 6.56031 6.89332 7.17716 8.71592 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.005579 C = 0.004949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.110589 B = 5017.388284 C = 5656.564317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.299 3.701 10 H 0.040 0.960 11 O -0.355 6.355 12 C 0.449 3.551 13 O -0.548 6.548 14 C -0.074 4.074 15 H 0.124 0.876 16 C -0.079 4.079 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.086 4.086 20 C -0.102 4.102 21 C -0.002 4.002 22 C -0.195 4.195 23 C -0.227 4.227 24 C -0.070 4.070 25 O -0.193 6.193 26 H 0.270 0.730 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.121 0.879 36 H 0.166 0.834 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.769 -13.317 2.354 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.179 4.179 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.092 0.908 9 C 0.245 3.755 10 H 0.058 0.942 11 O -0.271 6.271 12 C 0.294 3.706 13 O -0.438 6.438 14 C -0.093 4.093 15 H 0.142 0.858 16 C -0.116 4.116 17 C -0.178 4.178 18 C -0.170 4.170 19 C -0.123 4.123 20 C -0.140 4.140 21 C -0.052 4.052 22 C -0.215 4.215 23 C -0.246 4.246 24 C -0.136 4.136 25 O -0.090 6.090 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.143 0.857 30 H 0.149 0.851 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.564 -13.256 2.282 14.557 hybrid contribution -0.622 1.449 -0.087 1.579 sum 4.941 -11.807 2.195 12.987 Atomic orbital electron populations 1.70177 1.07251 1.28422 1.46791 1.25842 0.96032 1.02840 0.93205 0.85156 0.78937 0.77412 0.78072 1.18528 1.19562 1.20217 1.21180 0.94144 0.88727 1.55220 0.90780 1.18751 0.85761 0.82865 0.88143 0.94225 1.86546 1.47858 1.22545 1.70130 1.24690 0.87248 0.85111 0.73536 1.90577 1.24419 1.83765 1.45077 1.21274 0.97983 0.89234 1.00787 0.85783 1.20339 1.00673 0.97303 0.93286 1.22008 1.01022 0.94467 1.00340 1.22311 0.99922 0.99907 0.94844 1.20518 0.97273 0.97926 0.96578 1.21516 0.98347 0.93758 1.00363 1.23298 0.94405 1.02377 0.85141 1.21293 0.94707 1.07175 0.98328 1.22039 1.01064 1.08137 0.93406 1.24688 0.84537 1.07186 0.97213 1.83961 1.37993 1.69079 1.17999 0.92038 0.89942 0.92069 0.85662 0.85130 0.89156 0.88631 0.92306 0.91419 0.86116 0.81673 0.74331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.99 10.95 21.45 0.23 -50.76 16 2 C 0.02 1.33 5.30 84.65 0.45 1.77 16 3 Si 0.98 43.26 29.54 68.60 2.03 45.28 16 4 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 5 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 6 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 7 C -0.56 -31.95 8.89 25.60 0.23 -31.72 16 8 H 0.07 4.17 7.81 -2.91 -0.02 4.15 16 9 C 0.30 16.81 2.42 29.10 0.07 16.88 16 10 H 0.04 2.48 7.15 -2.38 -0.02 2.46 16 11 O -0.35 -17.65 9.78 -49.51 -0.48 -18.14 16 12 C 0.45 19.56 7.21 71.24 0.51 20.08 16 13 O -0.55 -27.10 15.12 21.96 0.33 -26.76 16 14 C -0.07 -2.27 2.69 -11.40 -0.03 -2.30 16 15 H 0.12 3.34 8.13 -2.39 -0.02 3.33 16 16 C -0.08 -2.16 5.37 29.66 0.16 -2.00 16 17 C -0.16 -3.26 9.80 27.04 0.27 -3.00 16 18 C -0.15 -2.63 9.80 27.04 0.27 -2.37 16 19 C -0.09 -1.54 6.12 29.65 0.18 -1.36 16 20 C -0.10 -2.69 4.70 30.73 0.14 -2.54 16 21 C 0.00 -0.09 5.53 24.83 0.14 0.05 16 22 C -0.20 -10.12 9.17 22.19 0.20 -9.92 16 23 C -0.23 -9.54 10.91 22.19 0.24 -9.30 16 24 C -0.07 -2.74 12.09 66.97 0.81 -1.93 16 25 O -0.19 -9.51 10.65 -1.43 -0.02 -9.53 16 26 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 27 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.06 1.86 8.10 -2.39 -0.02 1.84 16 29 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 30 H 0.13 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.06 1.68 8.12 -2.38 -0.02 1.66 16 34 H 0.07 1.89 7.90 -2.39 -0.02 1.87 16 35 H 0.12 6.60 7.87 -2.91 -0.02 6.58 16 36 H 0.17 5.61 8.06 -2.91 -0.02 5.58 16 37 H 0.24 6.35 8.06 -2.91 -0.02 6.32 16 Total: -1.00 -70.53 317.39 6.79 -63.74 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 1.06 Total: 23.81 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 3.64 Total: -27.65 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.23 Total: -50.76 kcal Atomic # 8 Polarization: -54.26 SS G_CDS: -0.17 Total: -54.43 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -70.53 6.79 -63.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.744 kcal (2) G-P(sol) polarization free energy of solvation -70.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds