Wall clock time and date at job start Mon Mar 30 2020 01:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 119.99979 * 2 1 4 4 H 1.48499 * 109.47254 * 265.52565 * 3 2 1 5 5 H 1.48507 * 109.47272 * 25.52518 * 3 2 1 6 6 H 1.48501 * 109.47317 * 145.52384 * 3 2 1 7 7 C 1.37883 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00110 * 353.37898 * 7 2 1 9 9 C 1.50699 * 119.99390 * 173.37538 * 7 2 1 10 10 H 1.09004 * 109.46951 * 55.39296 * 9 7 2 11 11 O 1.45196 * 109.47436 * 295.39191 * 9 7 2 12 12 C 1.34231 * 116.99957 * 150.00508 * 11 9 7 13 13 O 1.20822 * 120.00291 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.00029 * 180.02562 * 12 11 9 15 15 H 1.09004 * 109.63991 * 59.99035 * 14 12 11 16 16 C 1.53026 * 109.63901 * 299.57745 * 14 12 11 17 17 C 1.50066 * 110.14712 * 190.88240 * 16 14 12 18 18 C 1.29443 * 124.07719 * 17.12551 * 17 16 14 19 19 C 1.50066 * 124.07510 * 359.50964 * 18 17 16 20 20 C 1.52983 * 110.28759 * 17.02565 * 19 18 17 21 21 C 1.50703 * 109.46837 * 175.38818 * 9 7 2 22 22 C 1.34511 * 125.78812 * 264.74400 * 21 9 7 23 23 C 1.41385 * 106.83764 * 180.02562 * 22 21 9 24 24 C 1.34510 * 106.84167 * 0.02562 * 23 22 21 25 25 O 1.34296 * 108.42266 * 0.02562 * 24 23 22 26 26 H 0.97001 * 120.00010 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.35672 * 311.08170 * 16 14 12 28 28 H 1.08997 * 109.36129 * 70.66716 * 16 14 12 29 29 H 1.08003 * 117.96341 * 197.11178 * 17 16 14 30 30 H 1.07995 * 117.96443 * 179.53767 * 18 17 16 31 31 H 1.08997 * 109.35896 * 137.35947 * 19 18 17 32 32 H 1.09004 * 109.36385 * 257.08573 * 19 18 17 33 33 H 1.09000 * 109.79194 * 191.07676 * 20 19 18 34 34 H 1.08997 * 109.47383 * 70.45830 * 20 19 18 35 35 H 1.08001 * 126.58484 * 359.77691 * 22 21 9 36 36 H 1.08007 * 126.57905 * 180.02562 * 23 22 21 37 37 H 1.08007 * 125.78758 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5912 1.9918 -1.3958 5 1 1.4024 2.6781 0.6033 6 1 3.4961 1.4693 0.7925 7 6 2.0045 -1.1941 0.0005 8 1 1.4699 -2.1262 0.1088 9 6 3.5039 -1.1985 -0.1500 10 1 3.9482 -0.5677 0.6199 11 8 3.8603 -0.6858 -1.4609 12 6 5.0371 -0.0490 -1.5668 13 8 5.7458 0.0763 -0.5964 14 6 5.4740 0.5108 -2.8961 15 1 4.7469 1.2461 -3.2408 16 6 5.5852 -0.6215 -3.9195 17 6 6.2671 -0.1297 -5.1625 18 6 6.9681 0.9568 -5.2236 19 6 7.1881 1.8820 -4.0627 20 6 6.8489 1.1748 -2.7492 21 6 4.0192 -2.6072 -0.0044 22 6 4.4896 -3.1596 1.1283 23 6 4.8627 -4.4863 0.8127 24 6 4.5985 -4.6650 -0.4941 25 8 4.0887 -3.5233 -0.9841 26 1 -0.4850 0.8400 -0.0004 27 1 6.1625 -1.4406 -3.4907 28 1 4.5871 -0.9793 -4.1724 29 1 6.1671 -0.7190 -6.0620 30 1 7.4226 1.2137 -6.1690 31 1 8.2311 2.1977 -4.0449 32 1 6.5475 2.7572 -4.1716 33 1 6.8206 1.9002 -1.9361 34 1 7.6022 0.4152 -2.5405 35 1 4.5708 -2.6803 2.0927 36 1 5.2797 -5.2162 1.4907 37 1 4.7685 -5.5726 -1.0544 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346719872.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:18 Heat of formation + Delta-G solvation = -81.891877 kcal Electronic energy + Delta-G solvation = -21779.397056 eV Core-core repulsion = 18487.820433 eV Total energy + Delta-G solvation = -3291.576623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.45494 -41.63318 -39.15323 -37.51756 -35.13910 -33.94510 -32.79787 -32.00034 -31.68538 -28.92418 -25.74889 -24.57593 -23.91277 -22.65067 -21.75332 -21.08472 -19.55316 -19.03995 -18.74992 -18.30807 -17.64879 -16.96150 -16.73744 -16.53958 -15.95179 -15.46951 -14.92553 -14.76431 -14.49628 -14.13213 -14.05523 -13.83268 -13.70520 -13.48196 -13.33841 -13.23629 -13.19097 -12.87107 -12.17896 -12.06634 -11.96991 -11.84833 -11.63333 -11.44814 -11.18098 -11.00975 -10.81207 -9.89484 -9.35967 -8.61294 -6.75581 0.83032 1.13850 1.16510 1.23597 1.29437 1.41186 1.67874 1.86478 2.10141 2.22444 2.87076 3.50872 3.67408 3.73283 3.92977 4.09386 4.15847 4.18306 4.25129 4.31958 4.37158 4.43699 4.56910 4.68916 4.84755 4.88934 4.97268 4.99678 5.02041 5.04511 5.18060 5.18351 5.25697 5.59414 5.70390 5.74961 5.95565 6.03833 6.27623 6.33426 6.82300 6.94727 8.52245 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.013533 B = 0.008009 C = 0.005802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.463854 B = 3495.068312 C = 4824.622360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.916 3.084 4 H -0.253 1.253 5 H -0.262 1.262 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.261 3.739 10 H 0.066 0.934 11 O -0.360 6.360 12 C 0.443 3.557 13 O -0.544 6.544 14 C -0.087 4.087 15 H 0.111 0.889 16 C -0.077 4.077 17 C -0.161 4.161 18 C -0.152 4.152 19 C -0.088 4.088 20 C -0.102 4.102 21 C -0.020 4.020 22 C -0.228 4.228 23 C -0.215 4.215 24 C -0.055 4.055 25 O -0.188 6.188 26 H 0.281 0.719 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.149 0.851 36 H 0.181 0.819 37 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.308 -0.115 -8.827 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.177 1.177 5 H -0.186 1.186 6 H -0.188 1.188 7 C -0.564 4.564 8 H 0.072 0.928 9 C 0.209 3.791 10 H 0.083 0.917 11 O -0.277 6.277 12 C 0.288 3.712 13 O -0.435 6.435 14 C -0.107 4.107 15 H 0.129 0.871 16 C -0.114 4.114 17 C -0.179 4.179 18 C -0.170 4.170 19 C -0.125 4.125 20 C -0.139 4.139 21 C -0.070 4.070 22 C -0.247 4.247 23 C -0.234 4.234 24 C -0.122 4.122 25 O -0.085 6.085 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.166 0.834 36 H 0.199 0.801 37 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 14.206 0.045 -8.810 16.716 hybrid contribution -0.292 0.376 0.773 0.907 sum 13.914 0.420 -8.038 16.074 Atomic orbital electron populations 1.69961 1.07639 1.29464 1.46666 1.25641 0.95439 1.02283 0.91606 0.86167 0.79636 0.79821 0.80477 1.17747 1.18609 1.18793 1.20873 0.88929 0.94751 1.51864 0.92782 1.19264 0.94497 0.84087 0.81238 0.91683 1.86980 1.36102 1.65274 1.39299 1.24626 0.79438 0.74842 0.92312 1.90541 1.54648 1.57075 1.41214 1.21375 1.00396 0.99807 0.89078 0.87134 1.20317 1.01857 0.95862 0.93387 1.22023 0.99316 0.98943 0.97580 1.22301 0.98945 0.95811 0.99909 1.20527 1.03468 0.97796 0.90683 1.21518 0.93163 0.99991 0.99258 1.22917 1.03421 0.92611 0.88081 1.21797 1.06682 0.97216 0.99016 1.22110 1.07509 0.96777 0.97002 1.24967 1.01658 0.89804 0.95744 1.84030 1.64854 1.20997 1.38603 0.90905 0.91389 0.90280 0.85537 0.85008 0.88262 0.89687 0.91501 0.91606 0.83362 0.80147 0.73808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.95 13.96 21.45 0.30 -53.66 16 2 C 0.06 3.21 5.47 84.66 0.46 3.68 16 3 Si 0.92 44.47 26.02 68.60 1.79 46.25 16 4 H -0.25 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 6 H -0.26 -12.96 6.51 99.48 0.65 -12.31 16 7 C -0.53 -31.26 9.31 25.60 0.24 -31.02 16 8 H 0.05 3.51 7.99 -2.91 -0.02 3.48 16 9 C 0.26 13.77 1.72 29.10 0.05 13.82 16 10 H 0.07 3.55 5.75 -2.38 -0.01 3.54 16 11 O -0.36 -17.83 8.50 -48.78 -0.41 -18.24 16 12 C 0.44 19.27 6.54 71.24 0.47 19.74 16 13 O -0.54 -25.71 15.12 21.98 0.33 -25.37 16 14 C -0.09 -2.86 2.68 -11.40 -0.03 -2.89 16 15 H 0.11 3.46 8.13 -2.38 -0.02 3.44 16 16 C -0.08 -2.20 5.38 29.66 0.16 -2.04 16 17 C -0.16 -3.43 9.80 27.04 0.27 -3.16 16 18 C -0.15 -2.78 9.81 27.04 0.27 -2.51 16 19 C -0.09 -1.67 6.11 29.64 0.18 -1.49 16 20 C -0.10 -2.75 4.70 30.72 0.14 -2.61 16 21 C -0.02 -0.95 6.13 24.83 0.15 -0.80 16 22 C -0.23 -9.54 10.81 22.19 0.24 -9.30 16 23 C -0.22 -7.10 10.91 22.19 0.24 -6.86 16 24 C -0.06 -1.79 12.09 66.97 0.81 -0.99 16 25 O -0.19 -8.28 10.63 0.99 0.01 -8.27 16 26 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 27 H 0.07 2.03 8.10 -2.38 -0.02 2.01 16 28 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 30 H 0.13 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.92 7.90 -2.39 -0.02 1.90 16 34 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 35 H 0.15 5.84 8.06 -2.91 -0.02 5.81 16 36 H 0.18 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.25 5.00 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -71.64 315.41 6.66 -64.98 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 1.00 Total: 20.74 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.64 Total: -26.44 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.30 Total: -53.66 kcal Atomic # 8 Polarization: -51.81 SS G_CDS: -0.07 Total: -51.88 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.79 Total: 46.25 kcal Total: -71.64 6.66 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346719872.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.909 kcal (2) G-P(sol) polarization free energy of solvation -71.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds