Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38482 * 120.10510 * 2 1 4 4 O 1.35908 * 119.98243 * 0.02562 * 3 2 1 5 5 C 1.38815 * 120.03377 * 180.25885 * 3 2 1 6 6 C 1.38303 * 120.24826 * 359.79094 * 5 3 2 7 7 C 1.37948 * 120.21386 * 359.97438 * 6 5 3 8 8 C 1.39537 * 120.10310 * 179.81969 * 2 1 3 9 9 C 1.47741 * 120.12942 * 359.97438 * 8 2 1 10 10 O 1.21480 * 119.99224 * 359.29854 * 9 8 2 11 11 O 1.34701 * 120.00587 * 179.30262 * 9 8 2 12 12 C 1.45195 * 117.00146 * 185.12205 * 11 9 8 13 13 C 1.53005 * 109.47207 * 184.78799 * 12 11 9 14 14 C 1.50701 * 115.54678 * 301.33852 * 13 12 11 15 15 H 1.07999 * 119.99814 * 89.61526 * 14 13 12 16 16 C 1.37881 * 119.99936 * 269.61223 * 14 13 12 17 17 N 1.31509 * 119.99922 * 6.35683 * 16 14 13 18 18 Si 1.86795 * 119.99948 * 186.35014 * 16 14 13 19 19 H 1.48501 * 109.47167 * 270.00322 * 18 16 14 20 20 H 1.48502 * 109.47379 * 30.00095 * 18 16 14 21 21 H 1.48499 * 109.47093 * 150.00359 * 18 16 14 22 22 C 1.52998 * 117.50050 * 87.00443 * 13 12 11 23 23 C 1.53000 * 117.50045 * 155.66975 * 13 12 11 24 24 H 1.08999 * 109.46708 * 262.85451 * 1 2 3 25 25 H 1.08990 * 109.47108 * 22.85192 * 1 2 3 26 26 H 1.09001 * 109.47231 * 142.85916 * 1 2 3 27 27 H 0.96702 * 114.00223 * 270.22861 * 4 3 2 28 28 H 1.07998 * 119.87732 * 179.76607 * 5 3 2 29 29 H 1.07997 * 119.89140 * 179.97438 * 6 5 3 30 30 H 1.07993 * 120.02139 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.47584 * 64.78832 * 12 11 9 32 32 H 1.08997 * 109.47211 * 304.78357 * 12 11 9 33 33 H 0.97006 * 120.00360 * 355.22621 * 17 16 14 34 34 H 1.08997 * 117.50059 * 215.00279 * 22 13 12 35 35 H 1.08998 * 117.49871 * 0.03342 * 22 13 12 36 36 H 1.09000 * 117.49609 * 359.97412 * 23 13 12 37 37 H 1.08995 * 117.49649 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3761 0.0005 5 6 3.5898 1.1963 -0.0054 6 6 4.2850 0.0007 -0.0065 7 6 3.6034 -1.1986 -0.0016 8 6 2.2069 -1.2072 0.0038 9 6 1.4734 -2.4896 0.0084 10 8 0.2587 -2.4944 0.0218 11 8 2.1514 -3.6535 -0.0021 12 6 1.3687 -4.8714 -0.1123 13 6 2.2928 -6.0846 0.0120 14 6 3.3986 -6.1664 -1.0085 15 1 4.3540 -5.7046 -0.8076 16 6 3.1907 -6.8309 -2.1987 17 7 1.9932 -7.2846 -2.4979 18 14 4.6099 -7.0864 -3.3860 19 1 4.6817 -5.9389 -4.3259 20 1 5.8812 -7.1828 -2.6245 21 1 4.3951 -8.3406 -4.1516 22 6 2.5907 -6.6044 1.4197 23 6 1.6722 -7.3995 0.4882 24 1 -0.3633 -0.1278 1.0197 25 1 -0.3633 0.9469 -0.3991 26 1 -0.3634 -0.8192 -0.6205 27 1 1.3243 2.7155 -0.8827 28 1 4.1289 2.1321 -0.0092 29 1 5.3649 0.0061 -0.0111 30 1 4.1494 -2.1304 -0.0029 31 1 0.8668 -4.8946 -1.0797 32 1 0.6247 -4.8984 0.6838 33 1 1.2723 -7.2135 -1.8526 34 1 3.5865 -7.0057 1.6078 35 1 2.1280 -6.0826 2.2573 36 1 0.6057 -7.4002 0.7134 37 1 2.0636 -8.3237 0.0632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346751704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -82.708533 kcal Electronic energy + Delta-G solvation = -21071.508443 eV Core-core repulsion = 17779.896407 eV Total energy + Delta-G solvation = -3291.612036 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.52054 -39.26866 -37.19322 -36.57845 -35.52471 -32.57851 -31.89146 -30.49022 -27.41993 -26.66499 -24.87564 -23.80521 -21.81647 -21.37726 -20.59671 -19.56351 -18.58211 -17.05419 -16.77260 -16.25923 -15.79832 -15.67989 -15.52825 -14.89520 -14.15162 -13.76383 -13.53100 -13.47825 -12.99229 -12.66395 -12.40406 -12.29384 -12.21447 -11.93858 -11.88133 -11.59439 -10.98176 -10.84345 -10.78687 -10.52601 -10.14749 -10.08055 -9.83114 -9.55364 -9.02511 -8.66861 -8.57381 -8.50991 -8.39828 -6.39371 -4.13169 0.68996 1.14357 2.73725 3.09833 3.40638 3.43923 3.59676 3.66468 4.07858 4.47515 4.68523 4.75982 4.92128 5.00197 5.14464 5.27739 5.34516 5.60608 5.63859 5.73526 5.75550 5.84489 6.02322 6.06580 6.17788 6.18977 6.25064 6.28513 6.33497 6.49378 6.52960 6.62212 6.76971 6.98705 7.16296 7.23134 7.44926 8.15517 8.27436 8.39728 8.82479 9.60778 10.99783 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.004820 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.823938 B = 5808.065580 C = 6406.524071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C 0.082 3.918 4 O -0.492 6.492 5 C -0.111 4.111 6 C -0.126 4.126 7 C -0.060 4.060 8 C -0.108 4.108 9 C 0.498 3.502 10 O -0.514 6.514 11 O -0.325 6.325 12 C 0.113 3.887 13 C 0.012 3.988 14 C -0.563 4.563 15 H 0.057 0.943 16 C 0.025 3.975 17 N -0.908 5.908 18 Si 1.070 2.930 19 H -0.288 1.288 20 H -0.287 1.287 21 H -0.284 1.284 22 C -0.191 4.191 23 C -0.166 4.166 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.387 0.613 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.148 0.852 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.274 0.726 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 14.954 3.817 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.047 4.047 3 C 0.038 3.962 4 O -0.302 6.302 5 C -0.129 4.129 6 C -0.144 4.144 7 C -0.078 4.078 8 C -0.109 4.109 9 C 0.344 3.656 10 O -0.406 6.406 11 O -0.239 6.239 12 C 0.040 3.960 13 C 0.012 3.988 14 C -0.601 4.601 15 H 0.075 0.925 16 C -0.180 4.180 17 N -0.543 5.543 18 Si 0.898 3.102 19 H -0.214 1.214 20 H -0.213 1.213 21 H -0.210 1.210 22 C -0.229 4.229 23 C -0.204 4.204 24 H 0.094 0.906 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.243 0.757 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.778 14.222 2.942 14.632 hybrid contribution -0.575 0.667 1.054 1.374 sum 1.203 14.889 3.996 15.463 Atomic orbital electron populations 1.21038 0.89504 1.03239 1.03886 1.20349 0.97560 0.90924 0.95896 1.18047 0.89714 0.84657 1.03825 1.84856 1.76501 1.35405 1.33395 1.21626 0.93314 0.99167 0.98827 1.21032 1.00483 0.91415 1.01500 1.21672 0.92878 0.99660 0.93640 1.18997 0.93663 0.90289 1.07994 1.21121 0.85951 0.85322 0.73215 1.90719 1.14924 1.88186 1.46727 1.86592 1.41289 1.14314 1.81752 1.22926 0.92381 0.80538 1.00161 1.19075 0.97364 0.88578 0.93818 1.21210 0.97902 1.38292 1.02703 0.92485 1.25830 1.01070 0.93376 0.97758 1.70728 1.01307 1.45192 1.37032 0.83531 0.74357 0.76854 0.75438 1.21449 1.21340 1.20999 1.22956 0.99993 1.05820 0.94097 1.22766 0.96371 0.97028 1.04205 0.90611 0.92107 0.88308 0.75749 0.85016 0.84705 0.83464 0.91565 0.93775 0.91450 0.89712 0.91369 0.91208 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.68 8.64 36.01 0.31 -1.37 16 2 C -0.05 -0.67 5.93 -104.05 -0.62 -1.29 16 3 C 0.08 1.00 6.67 -39.28 -0.26 0.74 16 4 O -0.49 -5.04 12.43 -19.45 -0.24 -5.28 16 5 C -0.11 -1.19 9.98 -39.34 -0.39 -1.59 16 6 C -0.13 -1.43 10.03 -39.66 -0.40 -1.83 16 7 C -0.06 -0.87 9.61 -39.16 -0.38 -1.24 16 8 C -0.11 -1.77 5.87 -105.00 -0.62 -2.39 16 9 C 0.50 9.83 7.86 34.61 0.27 10.10 16 10 O -0.51 -10.65 12.96 -19.25 -0.25 -10.90 16 11 O -0.32 -7.12 9.29 -40.49 -0.38 -7.50 16 12 C 0.11 2.63 5.42 37.16 0.20 2.83 16 13 C 0.01 0.30 1.36 -155.66 -0.21 0.09 16 14 C -0.56 -15.28 8.68 -34.44 -0.30 -15.57 16 15 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 16 C 0.03 0.69 5.36 -17.82 -0.10 0.59 16 17 N -0.91 -26.32 13.52 55.43 0.75 -25.57 16 18 Si 1.07 24.51 29.91 -169.99 -5.08 19.43 16 19 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.19 -4.13 9.94 -26.69 -0.27 -4.39 16 23 C -0.17 -3.75 8.23 -26.69 -0.22 -3.97 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 25 H 0.06 0.69 7.32 -51.93 -0.38 0.31 16 26 H 0.10 1.57 5.74 -51.93 -0.30 1.28 16 27 H 0.39 2.15 9.06 45.56 0.41 2.56 16 28 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.15 2.17 7.61 -52.49 -0.40 1.77 16 31 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 32 H 0.04 0.96 7.94 -51.93 -0.41 0.55 16 33 H 0.27 7.85 6.23 -40.82 -0.25 7.60 16 34 H 0.08 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.09 2.21 8.14 -51.93 -0.42 1.79 16 LS Contribution 319.70 15.07 4.82 4.82 Total: -1.00 -31.44 319.70 -7.27 -38.71 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -3.92 Total: 5.59 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -2.97 Total: -19.30 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.75 Total: -25.57 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.87 Total: -23.69 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.08 Total: 19.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.44 -7.27 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346751704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.994 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds