Wall clock time and date at job start Mon Mar 30 2020 01:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38482 * 120.10510 * 2 1 4 4 O 1.35908 * 119.98243 * 0.02562 * 3 2 1 5 5 C 1.38815 * 120.03377 * 180.25885 * 3 2 1 6 6 C 1.38303 * 120.24826 * 359.79094 * 5 3 2 7 7 C 1.37948 * 120.21386 * 359.97438 * 6 5 3 8 8 C 1.39537 * 120.10310 * 179.81969 * 2 1 3 9 9 C 1.47741 * 120.12942 * 359.97438 * 8 2 1 10 10 O 1.21480 * 119.99224 * 359.29854 * 9 8 2 11 11 O 1.34701 * 120.00587 * 179.30262 * 9 8 2 12 12 C 1.45195 * 117.00146 * 185.12205 * 11 9 8 13 13 C 1.53005 * 109.47207 * 184.78799 * 12 11 9 14 14 C 1.50701 * 115.54678 * 301.33852 * 13 12 11 15 15 H 1.07999 * 119.99814 * 89.61526 * 14 13 12 16 16 C 1.37881 * 119.99936 * 269.61223 * 14 13 12 17 17 N 1.31509 * 119.99922 * 6.35683 * 16 14 13 18 18 Si 1.86795 * 119.99948 * 186.35014 * 16 14 13 19 19 H 1.48501 * 109.47167 * 270.00322 * 18 16 14 20 20 H 1.48502 * 109.47379 * 30.00095 * 18 16 14 21 21 H 1.48499 * 109.47093 * 150.00359 * 18 16 14 22 22 C 1.52998 * 117.50050 * 87.00443 * 13 12 11 23 23 C 1.53000 * 117.50045 * 155.66975 * 13 12 11 24 24 H 1.08999 * 109.46708 * 262.85451 * 1 2 3 25 25 H 1.08990 * 109.47108 * 22.85192 * 1 2 3 26 26 H 1.09001 * 109.47231 * 142.85916 * 1 2 3 27 27 H 0.96702 * 114.00223 * 270.22861 * 4 3 2 28 28 H 1.07998 * 119.87732 * 179.76607 * 5 3 2 29 29 H 1.07997 * 119.89140 * 179.97438 * 6 5 3 30 30 H 1.07993 * 120.02139 * 179.97438 * 7 6 5 31 31 H 1.09005 * 109.47584 * 64.78832 * 12 11 9 32 32 H 1.08997 * 109.47211 * 304.78357 * 12 11 9 33 33 H 0.97006 * 120.00360 * 355.22621 * 17 16 14 34 34 H 1.08997 * 117.50059 * 215.00279 * 22 13 12 35 35 H 1.08998 * 117.49871 * 0.03342 * 22 13 12 36 36 H 1.09000 * 117.49609 * 359.97412 * 23 13 12 37 37 H 1.08995 * 117.49649 * 144.97447 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2016 1.1980 0.0000 4 8 1.5239 2.3761 0.0005 5 6 3.5898 1.1963 -0.0054 6 6 4.2850 0.0007 -0.0065 7 6 3.6034 -1.1986 -0.0016 8 6 2.2069 -1.2072 0.0038 9 6 1.4734 -2.4896 0.0084 10 8 0.2587 -2.4944 0.0218 11 8 2.1514 -3.6535 -0.0021 12 6 1.3687 -4.8714 -0.1123 13 6 2.2928 -6.0846 0.0120 14 6 3.3986 -6.1664 -1.0085 15 1 4.3540 -5.7046 -0.8076 16 6 3.1907 -6.8309 -2.1987 17 7 1.9932 -7.2846 -2.4979 18 14 4.6099 -7.0864 -3.3860 19 1 4.6817 -5.9389 -4.3259 20 1 5.8812 -7.1828 -2.6245 21 1 4.3951 -8.3406 -4.1516 22 6 2.5907 -6.6044 1.4197 23 6 1.6722 -7.3995 0.4882 24 1 -0.3633 -0.1278 1.0197 25 1 -0.3633 0.9469 -0.3991 26 1 -0.3634 -0.8192 -0.6205 27 1 1.3243 2.7155 -0.8827 28 1 4.1289 2.1321 -0.0092 29 1 5.3649 0.0061 -0.0111 30 1 4.1494 -2.1304 -0.0029 31 1 0.8668 -4.8946 -1.0797 32 1 0.6247 -4.8984 0.6838 33 1 1.2723 -7.2135 -1.8526 34 1 3.5865 -7.0057 1.6078 35 1 2.1280 -6.0826 2.2573 36 1 0.6057 -7.4002 0.7134 37 1 2.0636 -8.3237 0.0632 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346751704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:29 Heat of formation + Delta-G solvation = -101.468981 kcal Electronic energy + Delta-G solvation = -21072.321958 eV Core-core repulsion = 17779.896407 eV Total energy + Delta-G solvation = -3292.425550 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.84277 -40.51632 -38.90750 -37.57873 -37.19377 -33.95904 -33.63905 -31.57672 -28.92210 -27.95968 -26.93228 -25.04130 -23.21971 -22.82312 -21.89036 -21.50360 -19.68350 -18.89288 -18.16362 -17.60899 -17.32709 -16.76561 -16.71838 -16.01976 -15.82313 -15.60402 -15.01156 -14.66607 -14.59875 -14.22485 -13.85586 -13.77985 -13.51471 -13.25172 -12.98145 -12.86336 -12.67543 -12.63850 -12.29666 -11.92839 -11.85794 -11.73184 -11.55192 -11.09431 -10.52594 -10.46900 -10.39830 -10.06212 -9.65248 -8.56455 -6.30256 -0.43575 0.16730 1.39642 1.54542 1.60748 1.63158 1.80415 2.57192 2.57956 3.11698 3.19989 3.24553 3.56097 3.72327 3.93507 3.94063 4.02689 4.15905 4.22145 4.31722 4.41126 4.51867 4.66656 4.67941 4.70410 4.75489 4.76387 4.94771 5.09719 5.17996 5.22102 5.29809 5.33126 5.38539 5.57062 5.72100 6.12820 6.21949 6.63774 6.70661 6.79006 7.50682 8.83875 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.004820 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.823938 B = 5808.065580 C = 6406.524071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.063 4.063 3 C 0.091 3.909 4 O -0.494 6.494 5 C -0.095 4.095 6 C -0.114 4.114 7 C -0.074 4.074 8 C -0.135 4.135 9 C 0.491 3.509 10 O -0.533 6.533 11 O -0.337 6.337 12 C 0.125 3.875 13 C -0.022 4.022 14 C -0.571 4.571 15 H 0.047 0.953 16 C -0.021 4.021 17 N -0.934 5.934 18 Si 1.112 2.888 19 H -0.278 1.278 20 H -0.269 1.269 21 H -0.284 1.284 22 C -0.167 4.167 23 C -0.162 4.162 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.410 0.590 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.135 0.865 31 H 0.036 0.964 32 H 0.055 0.945 33 H 0.265 0.735 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 17.429 4.244 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C 0.046 3.954 4 O -0.307 6.307 5 C -0.113 4.113 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.137 4.137 9 C 0.339 3.661 10 O -0.426 6.426 11 O -0.253 6.253 12 C 0.051 3.949 13 C -0.023 4.023 14 C -0.609 4.609 15 H 0.066 0.934 16 C -0.221 4.221 17 N -0.571 5.571 18 Si 0.935 3.065 19 H -0.204 1.204 20 H -0.194 1.194 21 H -0.210 1.210 22 C -0.204 4.204 23 C -0.200 4.200 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.090 0.910 27 H 0.270 0.730 28 H 0.188 0.812 29 H 0.186 0.814 30 H 0.153 0.847 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.487 16.724 3.377 17.414 hybrid contribution -1.116 0.065 0.962 1.475 sum 2.371 16.788 4.339 17.501 Atomic orbital electron populations 1.20934 0.89752 1.03545 1.02949 1.20479 0.97671 0.91339 0.96897 1.18091 0.90394 0.84340 1.02529 1.84807 1.76314 1.34124 1.35490 1.22035 0.92686 1.00408 0.96155 1.21382 1.02078 0.90231 0.99451 1.21688 0.92055 1.00739 0.94790 1.18949 0.94531 0.88929 1.11255 1.21873 0.86144 0.85724 0.72363 1.90704 1.15770 1.88386 1.47773 1.86589 1.41622 1.14713 1.82370 1.22574 0.92276 0.81167 0.98852 1.19173 0.97934 0.89825 0.95366 1.21449 0.98229 1.37661 1.03531 0.93442 1.27115 1.02363 0.92921 0.99655 1.70830 1.01937 1.47077 1.37223 0.82993 0.72522 0.76933 0.74084 1.20443 1.19373 1.21008 1.22969 1.00033 1.04190 0.93247 1.22700 0.97553 0.95472 1.04239 0.91457 0.89434 0.90994 0.73019 0.81227 0.81352 0.84749 0.94559 0.92695 0.92450 0.89444 0.88967 0.89448 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.22 8.64 71.24 0.62 -2.60 16 2 C -0.06 -1.77 5.93 -19.49 -0.12 -1.89 16 3 C 0.09 1.95 6.67 22.47 0.15 2.10 16 4 O -0.49 -8.25 12.43 -92.51 -1.15 -9.40 16 5 C -0.09 -1.63 9.98 22.42 0.22 -1.40 16 6 C -0.11 -2.20 10.03 22.22 0.22 -1.98 16 7 C -0.07 -2.08 9.61 22.54 0.22 -1.86 16 8 C -0.14 -4.47 5.87 -20.11 -0.12 -4.59 16 9 C 0.49 20.20 7.86 70.33 0.55 20.76 16 10 O -0.53 -23.25 12.96 19.90 0.26 -22.99 16 11 O -0.34 -15.39 9.29 -56.11 -0.52 -15.91 16 12 C 0.13 6.02 5.42 71.98 0.39 6.41 16 13 C -0.02 -1.12 1.36 -52.93 -0.07 -1.19 16 14 C -0.57 -31.55 8.68 25.60 0.22 -31.32 16 15 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 16 C -0.02 -1.18 5.36 84.66 0.45 -0.72 16 17 N -0.93 -55.57 13.52 21.45 0.29 -55.28 16 18 Si 1.11 49.55 29.91 68.60 2.05 51.60 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.17 -7.10 9.94 30.62 0.30 -6.79 16 23 C -0.16 -7.38 8.23 30.62 0.25 -7.13 16 24 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.09 1.87 7.32 -2.39 -0.02 1.85 16 26 H 0.07 2.39 5.74 -2.39 -0.01 2.38 16 27 H 0.41 2.86 9.06 -74.06 -0.67 2.19 16 28 H 0.17 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 30 H 0.13 4.02 7.61 -2.91 -0.02 4.00 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.05 2.46 7.94 -2.39 -0.02 2.44 16 33 H 0.26 15.74 6.23 -92.70 -0.58 15.16 16 34 H 0.09 3.64 8.14 -2.39 -0.02 3.62 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 Total: -1.00 -69.98 319.70 4.84 -65.14 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.61 Total: 19.06 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 3.30 Total: -32.22 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.29 Total: -55.28 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -1.41 Total: -48.29 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.05 Total: 51.60 kcal Total: -69.98 4.84 -65.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346751704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.329 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds