Wall clock time and date at job start Mon Mar 30 2020 02:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.20764 * 119.99768 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99740 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.38239 * 119.99731 * 269.72481 * 19 18 16 21 21 C 1.38238 * 119.99765 * 179.76650 * 20 19 18 22 22 C 1.38238 * 120.00037 * 0.50478 * 21 20 19 23 23 C 1.38239 * 119.99848 * 359.74849 * 22 21 20 24 24 C 1.38233 * 120.00125 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 30 30 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 31 31 H 1.09006 * 109.47174 * 299.99566 * 18 16 15 32 32 H 1.08997 * 109.47203 * 59.99938 * 18 16 15 33 33 H 1.07998 * 120.00362 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.99837 * 180.23412 * 21 20 19 35 35 H 1.07999 * 119.99921 * 179.72513 * 22 21 20 36 36 H 1.08000 * 119.99715 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.99996 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 8 1.0671 0.6571 4.8162 18 6 2.1686 -0.9008 6.1979 19 6 1.5773 -0.0650 7.3037 20 6 2.2860 1.0063 7.8147 21 6 1.7417 1.7760 8.8258 22 6 0.4931 1.4681 9.3329 23 6 -0.2133 0.3936 8.8255 24 6 0.3286 -0.3726 7.8105 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8643 -2.0126 3.5570 30 1 3.3172 -0.9843 3.5566 31 1 1.8018 -1.9240 6.2806 32 1 3.2554 -0.8967 6.2801 33 1 3.2632 1.2445 7.4212 34 1 2.2937 2.6152 9.2224 35 1 0.0697 2.0667 10.1259 36 1 -1.1886 0.1529 9.2220 37 1 -0.2232 -1.2122 7.4144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346786019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:51 Heat of formation + Delta-G solvation = -105.684795 kcal Electronic energy + Delta-G solvation = -20178.342479 eV Core-core repulsion = 16885.734117 eV Total energy + Delta-G solvation = -3292.608362 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24598 -39.49657 -38.49397 -35.65345 -33.89564 -33.16994 -31.07602 -30.75485 -29.60254 -26.91549 -25.20042 -23.12025 -22.78048 -21.81383 -19.85404 -19.73420 -17.09893 -16.74738 -16.45994 -16.29557 -15.95116 -15.42589 -15.35626 -15.22664 -14.52025 -14.32727 -13.76578 -13.59007 -13.13198 -12.90511 -12.73676 -12.55858 -12.18544 -12.00308 -11.52062 -11.34595 -11.19948 -11.04708 -10.81867 -10.70851 -10.35444 -10.19455 -10.07481 -9.81071 -9.19777 -9.08898 -9.04770 -8.85601 -8.45356 -6.10591 -4.16624 1.12842 1.23419 1.89892 3.08025 3.23791 3.30157 3.35795 3.42334 3.63950 4.21429 4.39591 4.42904 4.59513 4.81160 4.91505 4.99271 5.16446 5.22272 5.23464 5.27443 5.32153 5.32769 5.45028 5.81187 5.84619 6.02288 6.25828 6.32408 6.37670 6.68096 6.81169 6.88558 6.88838 7.12894 7.43194 7.47400 7.74381 7.94123 8.13275 8.78103 8.91979 9.48853 10.96779 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045775 B = 0.002986 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.547214 B = 9375.658138 C = 9609.400117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.065 0.935 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.272 1.272 11 H -0.285 1.285 12 C 0.466 3.534 13 O -0.517 6.517 14 O -0.349 6.349 15 C 0.011 3.989 16 C 0.353 3.647 17 O -0.416 6.416 18 C -0.127 4.127 19 C -0.074 4.074 20 C -0.107 4.107 21 C -0.119 4.119 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.107 4.107 25 H 0.031 0.969 26 H 0.025 0.975 27 H 0.096 0.904 28 H 0.264 0.736 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 -1.512 22.087 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.197 1.197 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.404 6.404 14 O -0.266 6.266 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.286 6.286 18 C -0.164 4.164 19 C -0.075 4.075 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.137 4.137 24 C -0.125 4.125 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.466 -1.163 21.905 21.941 hybrid contribution 0.475 -0.636 -0.776 1.110 sum 0.941 -1.799 21.129 21.226 Atomic orbital electron populations 1.21739 0.95493 1.00044 1.01927 1.18780 0.94975 0.97032 0.85238 0.91694 1.21127 1.32018 1.13297 0.88739 0.90615 1.24950 0.94877 0.95036 0.99151 1.69888 1.36359 1.22808 1.23896 0.86365 0.78498 0.80118 0.81725 1.20518 1.19684 1.21111 1.25515 0.76448 0.83209 0.83782 1.90494 1.36501 1.26764 1.86674 1.86752 1.70063 1.55062 1.14757 1.23187 1.00848 0.97230 0.85153 1.24438 0.78417 0.84279 0.90426 1.90465 1.27182 1.21739 1.89212 1.21079 1.03380 1.00756 0.91189 1.19424 0.95114 0.96563 0.96351 1.21029 1.00028 0.94769 0.96715 1.21120 0.95967 0.99501 0.97141 1.21158 0.95107 0.97519 1.00194 1.21119 0.99801 0.95716 0.97092 1.21026 0.94773 1.00042 0.96681 0.95008 0.95586 0.88506 0.92648 0.88472 0.88470 0.87125 0.87119 0.86086 0.86035 0.86169 0.86034 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.28 8.90 37.16 0.33 -2.95 16 2 C 0.06 1.52 2.74 -92.93 -0.25 1.27 16 3 H 0.07 1.75 8.14 -51.92 -0.42 1.32 16 4 C -0.51 -14.49 8.37 -34.44 -0.29 -14.78 16 5 H 0.08 2.20 6.76 -52.49 -0.35 1.85 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.43 16 8 Si 0.91 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.47 11.00 7.25 36.00 0.26 11.26 16 13 O -0.52 -12.87 15.21 -18.75 -0.29 -13.15 16 14 O -0.35 -7.19 9.66 -45.91 -0.44 -7.63 16 15 C 0.01 0.17 5.88 36.01 0.21 0.38 16 16 C 0.35 4.71 7.23 -29.03 -0.21 4.50 16 17 O -0.42 -7.33 16.18 -13.72 -0.22 -7.55 16 18 C -0.13 -1.13 5.77 -29.04 -0.17 -1.30 16 19 C -0.07 -0.79 4.37 -104.62 -0.46 -1.24 16 20 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 21 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 24 C -0.11 -1.10 9.70 -39.58 -0.38 -1.49 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.03 0.57 8.11 -51.93 -0.42 0.15 16 27 H 0.10 2.53 6.07 -51.93 -0.32 2.21 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.10 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.11 0.72 8.09 -51.93 -0.42 0.30 16 32 H 0.11 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -33.21 326.85 -7.92 -41.13 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -4.87 Total: -0.96 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.63 Total: -8.79 kcal Atomic # 7 Polarization: -25.06 SS G_CDS: 0.63 Total: -24.43 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.95 Total: -28.34 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.21 -7.92 -41.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346786019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.551 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds