Wall clock time and date at job start Mon Mar 30 2020 02:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3 13 13 O 1.20822 * 119.99840 * 120.00361 * 12 2 1 14 14 O 1.34228 * 120.00316 * 300.00594 * 12 2 1 15 15 C 1.45202 * 117.00107 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.46995 * 179.97438 * 15 14 12 17 17 O 1.20764 * 119.99768 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99740 * 179.97438 * 16 15 14 19 19 C 1.50701 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.38239 * 119.99731 * 269.72481 * 19 18 16 21 21 C 1.38238 * 119.99765 * 179.76650 * 20 19 18 22 22 C 1.38238 * 120.00037 * 0.50478 * 21 20 19 23 23 C 1.38239 * 119.99848 * 359.74849 * 22 21 20 24 24 C 1.38233 * 120.00125 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 27 27 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.09001 * 109.46935 * 299.99478 * 15 14 12 30 30 H 1.08998 * 109.46968 * 59.99840 * 15 14 12 31 31 H 1.09006 * 109.47174 * 299.99566 * 18 16 15 32 32 H 1.08997 * 109.47203 * 59.99938 * 18 16 15 33 33 H 1.07998 * 120.00362 * 0.02562 * 20 19 18 34 34 H 1.08000 * 119.99837 * 180.23412 * 21 20 19 35 35 H 1.07999 * 119.99921 * 179.72513 * 22 21 20 36 36 H 1.08000 * 119.99715 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.99996 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 6 2.0323 -0.7103 1.2305 13 8 2.7270 -1.6926 1.1197 14 8 1.7080 -0.2517 2.4496 15 6 2.2277 -0.9855 3.5897 16 6 1.7636 -0.3283 4.8640 17 8 1.0671 0.6571 4.8162 18 6 2.1686 -0.9008 6.1979 19 6 1.5773 -0.0650 7.3037 20 6 2.2860 1.0063 7.8147 21 6 1.7417 1.7760 8.8258 22 6 0.4931 1.4681 9.3329 23 6 -0.2133 0.3936 8.8255 24 6 0.3286 -0.3726 7.8105 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.7088 1.1611 -3.4845 29 1 1.8643 -2.0126 3.5570 30 1 3.3172 -0.9843 3.5566 31 1 1.8018 -1.9240 6.2806 32 1 3.2554 -0.8967 6.2801 33 1 3.2632 1.2445 7.4212 34 1 2.2937 2.6152 9.2224 35 1 0.0697 2.0667 10.1259 36 1 -1.1886 0.1529 9.2220 37 1 -0.2232 -1.2122 7.4144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346786019.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:50 Heat of formation + Delta-G solvation = -122.960085 kcal Electronic energy + Delta-G solvation = -20179.091592 eV Core-core repulsion = 16885.734117 eV Total energy + Delta-G solvation = -3293.357475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.61024 -40.75695 -39.48698 -37.36013 -35.94194 -33.95789 -32.74974 -31.76329 -30.75495 -27.88651 -27.29524 -24.93829 -23.47745 -22.70487 -21.62461 -20.76275 -18.69920 -18.14076 -17.88466 -17.62582 -17.49915 -16.74611 -16.42052 -16.29322 -15.95148 -15.51896 -15.21114 -14.72545 -14.28780 -14.18562 -13.89806 -13.71221 -13.46254 -13.32181 -12.98125 -12.94045 -12.78619 -12.63655 -12.31323 -12.05768 -12.01821 -11.86526 -11.75530 -11.21781 -11.13168 -10.78455 -10.54532 -9.79975 -9.62479 -8.20747 -6.35054 0.39965 0.52242 0.85759 1.37534 1.42922 1.43763 1.54307 1.71342 2.42443 2.78798 3.09364 3.15350 3.65471 3.94362 4.08111 4.10812 4.16475 4.23742 4.28717 4.35725 4.41231 4.62173 4.65147 4.66691 4.78811 4.87210 4.95381 5.14067 5.16885 5.31408 5.40457 5.56559 5.63180 5.65579 5.66229 5.85095 6.06835 6.13588 6.43412 6.71999 6.98687 7.34152 8.86044 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.045775 B = 0.002986 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.547214 B = 9375.658138 C = 9609.400117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.968 3.032 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.275 1.275 12 C 0.475 3.525 13 O -0.534 6.534 14 O -0.359 6.359 15 C -0.004 4.004 16 C 0.366 3.634 17 O -0.467 6.467 18 C -0.115 4.115 19 C -0.093 4.093 20 C -0.125 4.125 21 C -0.132 4.132 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.124 4.124 25 H 0.032 0.968 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.268 0.732 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -2.395 23.056 23.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.029 3.971 3 H 0.065 0.935 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.792 3.208 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.200 1.200 12 C 0.320 3.680 13 O -0.423 6.423 14 O -0.276 6.276 15 C -0.078 4.078 16 C 0.241 3.759 17 O -0.340 6.340 18 C -0.152 4.152 19 C -0.093 4.093 20 C -0.142 4.142 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.142 4.142 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.159 0.841 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.915 -2.045 22.903 23.012 hybrid contribution 0.330 -0.328 -0.948 1.056 sum 1.245 -2.373 21.955 22.118 Atomic orbital electron populations 1.21560 0.94633 0.99980 1.01709 1.18685 0.95784 0.96157 0.86432 0.93529 1.21261 1.32687 1.13373 0.90246 0.92068 1.25712 0.94836 0.95658 1.01799 1.69981 1.36649 1.23570 1.24804 0.85407 0.78309 0.78813 0.78248 1.19789 1.19706 1.20009 1.24807 0.76073 0.82606 0.84470 1.90470 1.37212 1.27374 1.87264 1.86670 1.70053 1.55736 1.15126 1.23791 1.02305 0.98020 0.83650 1.24892 0.76693 0.83023 0.91328 1.90466 1.29728 1.24003 1.89775 1.21127 1.05183 1.01483 0.87383 1.19668 0.95516 0.97146 0.96986 1.21321 1.00763 0.95002 0.97163 1.21446 0.96400 1.00006 0.97105 1.21495 0.95091 0.97625 1.00593 1.21445 1.00679 0.95770 0.97052 1.21319 0.95049 1.00732 0.97136 0.94872 0.94029 0.90346 0.92248 0.86393 0.86388 0.84076 0.84073 0.85065 0.84337 0.84158 0.84329 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.90 71.98 0.64 -5.32 16 2 C 0.05 2.55 2.74 -12.29 -0.03 2.52 16 3 H 0.05 2.59 8.14 -2.38 -0.02 2.57 16 4 C -0.54 -30.69 8.37 25.60 0.21 -30.48 16 5 H 0.06 3.61 6.76 -2.91 -0.02 3.59 16 6 C 0.02 1.09 5.30 84.66 0.45 1.54 16 7 N -0.91 -51.48 11.32 21.45 0.24 -51.24 16 8 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 C 0.48 22.47 7.25 71.24 0.52 22.99 16 13 O -0.53 -26.41 15.21 21.98 0.33 -26.08 16 14 O -0.36 -14.62 9.66 -45.03 -0.43 -15.05 16 15 C 0.00 -0.10 5.88 71.24 0.42 0.32 16 16 C 0.37 9.16 7.23 29.10 0.21 9.37 16 17 O -0.47 -16.25 16.18 17.39 0.28 -15.97 16 18 C -0.12 -1.73 5.77 29.10 0.17 -1.56 16 19 C -0.09 -1.81 4.37 -19.86 -0.09 -1.90 16 20 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 21 C -0.13 -2.34 10.05 22.27 0.22 -2.11 16 22 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 23 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 24 C -0.12 -2.39 9.70 22.27 0.22 -2.17 16 25 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.86 8.11 -2.39 -0.02 1.84 16 27 H 0.08 4.15 6.07 -2.39 -0.01 4.14 16 28 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 29 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 30 H 0.12 2.84 8.13 -2.39 -0.02 2.82 16 31 H 0.14 1.30 8.09 -2.38 -0.02 1.28 16 32 H 0.14 1.29 8.08 -2.39 -0.02 1.28 16 33 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 34 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 35 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -71.97 326.85 7.11 -64.85 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.06 Total: 10.71 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 3.60 Total: -13.07 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: 0.24 Total: -51.24 kcal Atomic # 8 Polarization: -57.28 SS G_CDS: 0.18 Total: -57.10 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -71.97 7.11 -64.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346786019.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.107 kcal (2) G-P(sol) polarization free energy of solvation -71.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds