Wall clock time and date at job start Mon Mar 30 2020 01:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47670 * 240.00736 * 3 2 1 5 5 H 1.48509 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47438 * 120.00338 * 3 2 1 7 7 C 1.37885 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00057 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47176 * 59.99805 * 9 7 2 11 11 O 1.45191 * 109.47316 * 180.02562 * 9 7 2 12 12 C 1.34771 * 117.00131 * 209.99723 * 11 9 7 13 13 O 1.21527 * 119.99877 * 0.02562 * 12 11 9 14 14 C 1.47233 * 119.99890 * 179.97438 * 12 11 9 15 15 C 1.47060 * 127.20549 * 0.02876 * 14 12 11 16 16 C 1.34149 * 105.95419 * 179.97438 * 15 14 12 17 17 O 1.34224 * 109.14243 * 359.97438 * 16 15 14 18 18 C 1.33628 * 110.92575 * 0.02562 * 17 16 15 19 19 C 1.50693 * 125.80716 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.50150 * 8.64652 * 19 18 17 21 21 C 1.53005 * 117.50096 * 300.02072 * 19 18 17 22 22 C 1.53004 * 109.46850 * 300.00006 * 9 7 2 23 23 C 1.53002 * 117.49951 * 248.74665 * 22 9 7 24 24 C 1.53001 * 117.49719 * 180.08472 * 22 9 7 25 25 H 0.97001 * 119.99990 * 359.97438 * 1 2 3 26 26 H 1.08000 * 127.02181 * 359.96398 * 15 14 12 27 27 H 1.07994 * 125.43166 * 180.02562 * 16 15 14 28 28 H 1.08998 * 115.55034 * 154.35822 * 19 18 17 29 29 H 1.09001 * 117.50018 * 359.97438 * 20 19 18 30 30 H 1.08995 * 117.49962 * 145.02316 * 20 19 18 31 31 H 1.08995 * 117.50151 * 214.98278 * 21 19 18 32 32 H 1.08998 * 117.49625 * 359.97438 * 21 19 18 33 33 H 1.09005 * 115.54878 * 34.42086 * 22 9 7 34 34 H 1.08992 * 117.49412 * 0.02562 * 23 22 9 35 35 H 1.08998 * 117.49695 * 145.02353 * 23 22 9 36 36 H 1.08999 * 117.49937 * 214.98322 * 24 22 9 37 37 H 1.09002 * 117.50077 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 8 2.1945 -3.6028 -0.0005 12 6 1.8017 -4.7437 -0.6009 13 8 0.7008 -4.8140 -1.1109 14 6 2.7066 -5.9044 -0.6399 15 6 4.0629 -5.9938 -0.0783 16 6 4.4950 -7.2336 -0.3538 17 8 3.5371 -7.8953 -1.0218 18 6 2.4619 -7.1230 -1.2040 19 6 1.1950 -7.5285 -1.9121 20 6 1.0408 -9.0013 -2.2965 21 6 1.3094 -7.9525 -3.3777 22 6 0.3719 -2.5805 1.2491 23 6 0.7539 -3.6085 2.3160 24 6 -0.4765 -3.8400 1.4352 25 1 -0.4850 0.8401 0.0004 26 1 4.6011 -5.2195 0.4481 27 1 5.4595 -7.6355 -0.0809 28 1 0.2961 -6.9893 -1.6130 29 1 1.8560 -9.6770 -2.0376 30 1 0.0404 -9.4315 -2.2502 31 1 0.4858 -7.6928 -4.0426 32 1 2.3011 -7.9379 -3.8298 33 1 -0.0498 -1.6347 1.5895 34 1 1.6317 -4.2265 2.1278 35 1 0.5831 -3.3392 3.3583 36 1 -1.4562 -3.7230 1.8984 37 1 -0.4087 -4.6106 0.6672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347938044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:38 Heat of formation + Delta-G solvation = -19.237311 kcal Electronic energy + Delta-G solvation = -21458.475756 eV Core-core repulsion = 18169.616038 eV Total energy + Delta-G solvation = -3288.859718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.53096 -39.46137 -37.19861 -36.35757 -34.61872 -32.86894 -32.70031 -29.69523 -27.93491 -24.51438 -23.12186 -22.76688 -22.46512 -21.43141 -20.88396 -19.46645 -18.93708 -17.65644 -16.68056 -16.30372 -16.14526 -15.60127 -15.49029 -15.04233 -14.68061 -14.14265 -13.80454 -13.20708 -12.76523 -12.51261 -12.39399 -12.13311 -11.68299 -11.53132 -11.35038 -11.09597 -10.99675 -10.93343 -10.56680 -10.54367 -10.28901 -10.06881 -9.71090 -9.66770 -9.45519 -9.09764 -8.51091 -8.43980 -8.41206 -6.17574 -4.24490 1.38273 2.16851 2.75232 3.27338 3.30918 3.32975 3.56314 3.70553 3.85496 4.32371 4.35316 4.68540 4.85383 4.91447 4.95904 5.15221 5.18480 5.41820 5.49745 5.59266 5.70350 5.88590 5.95915 5.97889 6.02430 6.07139 6.13340 6.18804 6.40983 6.49566 6.71587 6.90160 7.04981 7.09932 7.21695 7.58763 7.60825 7.85252 8.13239 8.64544 8.89858 9.39751 10.89695 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.004919 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.278965 B = 5691.128841 C = 5919.168001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.910 3.090 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.069 0.931 9 C 0.249 3.751 10 H 0.053 0.947 11 O -0.343 6.343 12 C 0.528 3.472 13 O -0.516 6.516 14 C -0.210 4.210 15 C -0.162 4.162 16 C -0.054 4.054 17 O -0.176 6.176 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.116 4.116 23 C -0.195 4.195 24 C -0.210 4.210 25 H 0.267 0.733 26 H 0.164 0.836 27 H 0.209 0.791 28 H 0.153 0.847 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -15.024 -1.582 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.138 4.138 3 Si 0.737 3.263 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.196 3.804 10 H 0.071 0.929 11 O -0.259 6.259 12 C 0.373 3.627 13 O -0.408 6.408 14 C -0.213 4.213 15 C -0.181 4.181 16 C -0.119 4.119 17 O -0.073 6.073 18 C 0.050 3.950 19 C -0.105 4.105 20 C -0.208 4.208 21 C -0.196 4.196 22 C -0.134 4.134 23 C -0.232 4.232 24 C -0.247 4.247 25 H 0.076 0.924 26 H 0.181 0.819 27 H 0.225 0.775 28 H 0.171 0.829 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.595 -15.135 -1.805 15.920 hybrid contribution 0.413 1.190 0.305 1.296 sum 5.009 -13.945 -1.500 14.893 Atomic orbital electron populations 1.69972 1.05892 1.27401 1.49022 1.24890 0.95041 0.99225 0.94632 0.86368 0.79346 0.81739 0.78894 1.19972 1.21043 1.19926 1.20910 0.93921 0.88352 1.52408 0.91253 1.20150 0.85987 0.80205 0.94019 0.92937 1.86569 1.48912 1.21662 1.68780 1.19827 0.84329 0.83113 0.75386 1.90724 1.21928 1.83524 1.44648 1.20476 0.96817 0.94070 1.09941 1.23003 0.94231 0.97857 1.03036 1.23820 0.94101 0.92752 1.01191 1.83683 1.22068 1.41414 1.60087 1.21621 0.87541 0.88285 0.97531 1.20833 0.93204 0.99198 0.97244 1.23059 1.03704 0.91008 1.03030 1.23053 1.03850 1.02160 0.90540 1.23022 0.99249 0.93690 0.97468 1.22801 0.98633 1.05945 0.95785 1.23145 0.94429 1.03585 1.03514 0.92356 0.81860 0.77495 0.82935 0.88185 0.87751 0.87468 0.88443 0.85281 0.89774 0.90474 0.90557 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.59 55.43 0.64 -24.35 16 2 C 0.06 1.77 5.20 -17.82 -0.09 1.68 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.25 6.66 2.41 -27.88 -0.07 6.59 16 10 H 0.05 1.56 7.16 -51.93 -0.37 1.19 16 11 O -0.34 -8.31 8.29 -40.68 -0.34 -8.65 16 12 C 0.53 11.60 6.90 34.39 0.24 11.83 16 13 O -0.52 -11.99 12.02 -19.29 -0.23 -12.22 16 14 C -0.21 -3.80 6.32 -103.29 -0.65 -4.45 16 15 C -0.16 -2.40 11.05 -37.45 -0.41 -2.81 16 16 C -0.05 -0.63 12.03 29.29 0.35 -0.28 16 17 O -0.18 -2.37 10.23 7.69 0.08 -2.29 16 18 C 0.10 1.59 6.86 -34.94 -0.24 1.35 16 19 C -0.09 -1.20 5.62 -91.77 -0.52 -1.72 16 20 C -0.17 -1.75 10.17 -26.73 -0.27 -2.03 16 21 C -0.16 -1.77 10.24 -26.73 -0.27 -2.05 16 22 C -0.12 -2.90 5.27 -90.62 -0.48 -3.38 16 23 C -0.19 -4.22 9.80 -26.69 -0.26 -4.48 16 24 C -0.21 -4.67 9.85 -26.69 -0.26 -4.93 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.16 2.25 8.06 -52.49 -0.42 1.83 16 27 H 0.21 1.45 8.06 -52.49 -0.42 1.02 16 28 H 0.15 2.36 6.66 -51.93 -0.35 2.01 16 29 H 0.10 0.97 7.96 -51.93 -0.41 0.55 16 30 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.13 3.50 6.46 -51.93 -0.34 3.17 16 34 H 0.08 1.81 6.91 -51.93 -0.36 1.46 16 35 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 2.14 5.36 -51.93 -0.28 1.86 16 LS Contribution 317.07 15.07 4.78 4.78 Total: -1.00 -30.67 317.07 -7.95 -38.62 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.61 Total: 7.59 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -3.25 Total: -19.45 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.64 Total: -24.35 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.49 Total: -23.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.67 -7.95 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.379 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds