Wall clock time and date at job start Mon Mar 30 2020 01:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86792 * 120.00147 * 2 1 4 4 H 1.48501 * 109.47670 * 240.00736 * 3 2 1 5 5 H 1.48509 * 109.47140 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47438 * 120.00338 * 3 2 1 7 7 C 1.37885 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00057 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47176 * 59.99805 * 9 7 2 11 11 O 1.45191 * 109.47316 * 180.02562 * 9 7 2 12 12 C 1.34771 * 117.00131 * 209.99723 * 11 9 7 13 13 O 1.21527 * 119.99877 * 0.02562 * 12 11 9 14 14 C 1.47233 * 119.99890 * 179.97438 * 12 11 9 15 15 C 1.47060 * 127.20549 * 0.02876 * 14 12 11 16 16 C 1.34149 * 105.95419 * 179.97438 * 15 14 12 17 17 O 1.34224 * 109.14243 * 359.97438 * 16 15 14 18 18 C 1.33628 * 110.92575 * 0.02562 * 17 16 15 19 19 C 1.50693 * 125.80716 * 179.97438 * 18 17 16 20 20 C 1.52997 * 117.50150 * 8.64652 * 19 18 17 21 21 C 1.53005 * 117.50096 * 300.02072 * 19 18 17 22 22 C 1.53004 * 109.46850 * 300.00006 * 9 7 2 23 23 C 1.53002 * 117.49951 * 248.74665 * 22 9 7 24 24 C 1.53001 * 117.49719 * 180.08472 * 22 9 7 25 25 H 0.97001 * 119.99990 * 359.97438 * 1 2 3 26 26 H 1.08000 * 127.02181 * 359.96398 * 15 14 12 27 27 H 1.07994 * 125.43166 * 180.02562 * 16 15 14 28 28 H 1.08998 * 115.55034 * 154.35822 * 19 18 17 29 29 H 1.09001 * 117.50018 * 359.97438 * 20 19 18 30 30 H 1.08995 * 117.49962 * 145.02316 * 20 19 18 31 31 H 1.08995 * 117.50151 * 214.98278 * 21 19 18 32 32 H 1.08998 * 117.49625 * 359.97438 * 21 19 18 33 33 H 1.09005 * 115.54878 * 34.42086 * 22 9 7 34 34 H 1.08992 * 117.49412 * 0.02562 * 23 22 9 35 35 H 1.08998 * 117.49695 * 145.02353 * 23 22 9 36 36 H 1.08999 * 117.49937 * 214.98322 * 24 22 9 37 37 H 1.09002 * 117.50077 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5567 -0.8902 11 8 2.1945 -3.6028 -0.0005 12 6 1.8017 -4.7437 -0.6009 13 8 0.7008 -4.8140 -1.1109 14 6 2.7066 -5.9044 -0.6399 15 6 4.0629 -5.9938 -0.0783 16 6 4.4950 -7.2336 -0.3538 17 8 3.5371 -7.8953 -1.0218 18 6 2.4619 -7.1230 -1.2040 19 6 1.1950 -7.5285 -1.9121 20 6 1.0408 -9.0013 -2.2965 21 6 1.3094 -7.9525 -3.3777 22 6 0.3719 -2.5805 1.2491 23 6 0.7539 -3.6085 2.3160 24 6 -0.4765 -3.8400 1.4352 25 1 -0.4850 0.8401 0.0004 26 1 4.6011 -5.2195 0.4481 27 1 5.4595 -7.6355 -0.0809 28 1 0.2961 -6.9893 -1.6130 29 1 1.8560 -9.6770 -2.0376 30 1 0.0404 -9.4315 -2.2502 31 1 0.4858 -7.6928 -4.0426 32 1 2.3011 -7.9379 -3.8298 33 1 -0.0498 -1.6347 1.5895 34 1 1.6317 -4.2265 2.1278 35 1 0.5831 -3.3392 3.3583 36 1 -1.4562 -3.7230 1.8984 37 1 -0.4087 -4.6106 0.6672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347938044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:37 Heat of formation + Delta-G solvation = -35.335479 kcal Electronic energy + Delta-G solvation = -21459.173825 eV Core-core repulsion = 18169.616038 eV Total energy + Delta-G solvation = -3289.557787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.66737 -41.26210 -38.38454 -37.96442 -36.46823 -34.89161 -33.99097 -30.82136 -29.96500 -26.16518 -24.88437 -23.88861 -23.35704 -23.22750 -22.27409 -21.06053 -20.51309 -19.10134 -18.61549 -17.78572 -17.64023 -17.12148 -16.90938 -16.47713 -16.14138 -15.64994 -15.37314 -14.69066 -14.32547 -14.17255 -13.72245 -13.40786 -13.26904 -13.18530 -12.99435 -12.78991 -12.47185 -12.38506 -12.23225 -12.01955 -11.95557 -11.64705 -11.36419 -11.31405 -11.05343 -10.89033 -10.49664 -10.45575 -9.53382 -8.27529 -6.44302 0.07973 1.04721 1.40772 1.44840 1.52113 1.62093 2.05927 2.07812 2.42988 2.85063 3.00004 3.13002 3.32740 3.68527 3.82451 3.94208 3.99323 4.04268 4.20833 4.24801 4.26347 4.50129 4.64977 4.69265 4.72192 4.83315 4.89866 4.96003 4.96953 5.06976 5.17094 5.21965 5.26952 5.34305 5.49288 5.54619 5.86437 5.94982 6.08299 6.59841 6.97515 7.26195 8.79963 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.023168 B = 0.004919 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.278965 B = 5691.128841 C = 5919.168001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 0.980 3.020 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.065 0.935 9 C 0.256 3.744 10 H 0.006 0.994 11 O -0.352 6.352 12 C 0.522 3.478 13 O -0.540 6.540 14 C -0.258 4.258 15 C -0.191 4.191 16 C -0.018 4.018 17 O -0.166 6.166 18 C 0.118 3.882 19 C -0.127 4.127 20 C -0.139 4.139 21 C -0.153 4.153 22 C -0.144 4.144 23 C -0.168 4.168 24 C -0.199 4.199 25 H 0.270 0.730 26 H 0.166 0.834 27 H 0.264 0.736 28 H 0.127 0.873 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.096 0.904 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.709 -16.797 -1.144 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.203 3.797 10 H 0.024 0.976 11 O -0.268 6.268 12 C 0.369 3.631 13 O -0.434 6.434 14 C -0.260 4.260 15 C -0.210 4.210 16 C -0.082 4.082 17 O -0.062 6.062 18 C 0.065 3.935 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.190 4.190 22 C -0.163 4.163 23 C -0.205 4.205 24 C -0.236 4.236 25 H 0.079 0.921 26 H 0.184 0.816 27 H 0.280 0.720 28 H 0.145 0.855 29 H 0.132 0.868 30 H 0.142 0.858 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.261 -16.937 -1.366 18.109 hybrid contribution -0.108 1.624 0.111 1.631 sum 6.153 -15.313 -1.255 16.551 Atomic orbital electron populations 1.70099 1.07412 1.28464 1.49006 1.25791 0.95907 1.02666 0.93588 0.85290 0.78158 0.77024 0.79276 1.19408 1.20133 1.18843 1.21191 0.93919 0.89618 1.53704 0.91657 1.19754 0.85961 0.81030 0.92975 0.97623 1.86544 1.48431 1.22133 1.69677 1.20503 0.84843 0.83253 0.74455 1.90694 1.23226 1.83841 1.45644 1.20464 0.98299 0.93622 1.13634 1.23121 0.93212 0.99799 1.04868 1.24754 0.94595 0.91156 0.97704 1.83739 1.21749 1.40856 1.59864 1.21798 0.88276 0.87466 0.95971 1.20802 0.91855 1.02326 0.99527 1.23198 1.05302 0.88884 1.00222 1.23182 1.04603 1.01851 0.89321 1.22727 1.01198 0.93907 0.98453 1.22848 0.98095 1.03262 0.96306 1.23134 0.95669 1.01379 1.03397 0.92069 0.81606 0.72050 0.85547 0.86834 0.85814 0.86607 0.87858 0.87548 0.89808 0.87723 0.88527 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.21 11.59 21.45 0.25 -52.96 16 2 C 0.02 1.16 5.20 84.66 0.44 1.60 16 3 Si 0.98 43.50 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 7 C -0.55 -31.87 8.90 25.60 0.23 -31.64 16 8 H 0.07 3.74 7.81 -2.91 -0.02 3.71 16 9 C 0.26 14.52 2.41 29.85 0.07 14.59 16 10 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 11 O -0.35 -17.97 8.29 -56.82 -0.47 -18.45 16 12 C 0.52 24.23 6.90 70.19 0.48 24.72 16 13 O -0.54 -26.92 12.02 19.75 0.24 -26.68 16 14 C -0.26 -9.50 6.32 -19.00 -0.12 -9.62 16 15 C -0.19 -5.48 11.05 23.65 0.26 -5.22 16 16 C -0.02 -0.36 12.03 66.89 0.80 0.45 16 17 O -0.17 -4.01 10.23 4.60 0.05 -3.96 16 18 C 0.12 3.60 6.86 25.28 0.17 3.77 16 19 C -0.13 -3.48 5.62 -11.54 -0.06 -3.55 16 20 C -0.14 -2.51 10.17 30.60 0.31 -2.20 16 21 C -0.15 -3.18 10.24 30.60 0.31 -2.87 16 22 C -0.14 -7.51 5.27 -10.79 -0.06 -7.56 16 23 C -0.17 -7.29 9.80 30.62 0.30 -6.99 16 24 C -0.20 -9.03 9.85 30.62 0.30 -8.73 16 25 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 26 H 0.17 4.53 8.06 -2.91 -0.02 4.50 16 27 H 0.26 2.14 8.06 -2.91 -0.02 2.12 16 28 H 0.13 4.14 6.66 -2.39 -0.02 4.12 16 29 H 0.11 1.78 7.96 -2.39 -0.02 1.76 16 30 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.11 6.02 6.46 -2.38 -0.02 6.01 16 34 H 0.08 3.64 6.91 -2.39 -0.02 3.62 16 35 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 36 H 0.10 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.08 3.96 5.36 -2.39 -0.01 3.95 16 Total: -1.00 -71.08 317.07 6.62 -64.46 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 1.09 Total: 25.32 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 3.45 Total: -33.26 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: 0.25 Total: -52.96 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.19 Total: -49.09 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -71.08 6.62 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347938044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.123 kcal (2) G-P(sol) polarization free energy of solvation -71.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds