Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47238 * 300.00202 * 3 2 1 6 6 H 1.48498 * 109.46836 * 59.99771 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47195 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47117 * 300.00196 * 9 7 2 12 12 C 1.34797 * 116.99742 * 270.00068 * 11 9 7 13 13 O 1.21534 * 120.00012 * 0.02562 * 12 11 9 14 14 C 1.46952 * 120.00155 * 179.97438 * 12 11 9 15 15 C 1.31645 * 118.11387 * 179.97438 * 14 12 11 16 16 C 1.50093 * 123.77642 * 180.66357 * 15 14 12 17 17 C 1.53160 * 110.05163 * 342.38761 * 16 15 14 18 18 C 1.53361 * 108.36773 * 50.10988 * 17 16 15 19 19 C 1.50106 * 118.10730 * 359.97438 * 14 12 11 20 20 C 1.50697 * 109.46815 * 59.99883 * 9 7 2 21 21 C 1.34515 * 125.78928 * 99.72079 * 20 9 7 22 22 C 1.41383 * 106.84181 * 179.88340 * 21 20 9 23 23 C 1.34519 * 106.84073 * 0.37399 * 22 21 20 24 24 O 1.34304 * 108.41939 * 359.76714 * 23 22 21 25 25 H 0.97010 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.08002 * 118.10679 * 0.37323 * 15 14 12 27 27 H 1.08994 * 109.36569 * 102.77258 * 16 15 14 28 28 H 1.09005 * 109.35631 * 222.36686 * 16 15 14 29 29 H 1.09004 * 109.83252 * 290.37573 * 17 16 15 30 30 H 1.08995 * 109.73980 * 169.79343 * 17 16 15 31 31 H 1.08999 * 109.62947 * 172.07823 * 18 17 16 32 32 H 1.08995 * 109.63428 * 51.49211 * 18 17 16 33 33 H 1.09003 * 109.35278 * 283.05106 * 19 14 12 34 34 H 1.08995 * 109.35873 * 42.77961 * 19 14 12 35 35 H 1.08000 * 126.57657 * 0.02562 * 21 20 9 36 36 H 1.08001 * 126.57780 * 180.16181 * 22 21 20 37 37 H 1.07994 * 125.78479 * 179.75164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 1.9593 -3.3277 -0.0015 11 8 0.4157 -2.5769 1.1835 12 6 0.9643 -3.1301 2.2835 13 8 2.1094 -3.5359 2.2530 14 6 0.1780 -3.2414 3.5200 15 6 0.7502 -3.7884 4.5719 16 6 0.0618 -3.9783 5.8920 17 6 -1.1786 -3.0833 5.9709 18 6 -2.0088 -3.2946 4.6990 19 6 -1.2314 -2.7250 3.5108 20 6 0.3851 -2.5781 -1.2325 21 6 0.6796 -3.2504 -2.3598 22 6 -0.4041 -3.0571 -3.2470 23 6 -1.2923 -2.2714 -2.6120 24 8 -0.8090 -1.9844 -1.3922 25 1 -0.4850 0.8402 0.0004 26 1 1.7726 -4.1238 4.4781 27 1 -0.2342 -5.0219 5.9983 28 1 0.7469 -3.7152 6.6979 29 1 -0.8766 -2.0383 6.0416 30 1 -1.7720 -3.3528 6.8445 31 1 -2.9632 -2.7767 4.7943 32 1 -2.1809 -4.3601 4.5467 33 1 -1.2178 -1.6370 3.5762 34 1 -1.7202 -3.0253 2.5840 35 1 1.5716 -3.8290 -2.5496 36 1 -0.4988 -3.4600 -4.2446 37 1 -2.2340 -1.9292 -3.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347948476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = -65.813664 kcal Electronic energy + Delta-G solvation = -21680.388785 eV Core-core repulsion = 18389.509365 eV Total energy + Delta-G solvation = -3290.879420 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28922 -39.45271 -37.61409 -35.34705 -32.91558 -31.82119 -31.10569 -30.56061 -29.67900 -26.51980 -24.00702 -23.17451 -22.36022 -20.75262 -20.26410 -19.42934 -17.58925 -16.97313 -16.58283 -16.46492 -15.39512 -14.96038 -14.58670 -14.42430 -14.27453 -13.78145 -13.52274 -13.24101 -12.80196 -12.61743 -12.16867 -12.07612 -11.84181 -11.75029 -11.53598 -11.31249 -11.05047 -10.99152 -10.68527 -10.54629 -10.34014 -10.20995 -9.80046 -9.43229 -9.01698 -8.82222 -8.74844 -8.69252 -7.33824 -6.20521 -4.41755 1.80511 2.92291 3.19784 3.27854 3.33225 3.58067 3.83336 3.99968 4.26986 4.29760 4.87184 4.97583 5.01751 5.13785 5.37393 5.47949 5.63635 5.67197 5.74441 5.84842 5.89621 5.97446 6.00461 6.17249 6.19910 6.34153 6.41240 6.49975 6.51124 6.73753 6.82022 6.88651 7.07660 7.23215 7.49476 7.64635 7.78444 7.84088 8.43861 8.61081 9.00519 9.31679 10.78502 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006511 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.058647 B = 4299.479745 C = 5033.513648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.080 3.920 3 Si 0.896 3.104 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.277 3.723 10 H 0.070 0.930 11 O -0.327 6.327 12 C 0.491 3.509 13 O -0.534 6.534 14 C -0.131 4.131 15 C -0.097 4.097 16 C -0.089 4.089 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.076 4.076 20 C 0.081 3.919 21 C -0.266 4.266 22 C -0.222 4.222 23 C -0.083 4.083 24 O -0.111 6.111 25 H 0.266 0.734 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.196 -5.259 6.477 9.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.092 0.908 9 C 0.225 3.775 10 H 0.088 0.912 11 O -0.241 6.241 12 C 0.336 3.664 13 O -0.428 6.428 14 C -0.132 4.132 15 C -0.116 4.116 16 C -0.126 4.126 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.113 4.113 20 C 0.027 3.973 21 C -0.286 4.286 22 C -0.241 4.241 23 C -0.152 4.152 24 O -0.002 6.002 25 H 0.076 0.924 26 H 0.139 0.861 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.206 -5.059 6.614 9.821 hybrid contribution 0.704 0.955 -0.577 1.319 sum -4.501 -4.105 6.037 8.577 Atomic orbital electron populations 1.70055 1.05650 1.27087 1.42851 1.25156 0.95020 0.99714 0.93191 0.86460 0.80520 0.82906 0.77857 1.19305 1.20569 1.20532 1.21287 0.93473 0.89313 1.54296 0.90816 1.18780 0.84785 0.98240 0.75701 0.91209 1.86824 1.46985 1.70066 1.20270 1.21276 0.85336 0.74340 0.85417 1.90711 1.19025 1.47922 1.85142 1.20383 0.97107 1.03525 0.92159 1.22801 1.00102 0.95357 0.93336 1.20532 0.96946 1.00402 0.94688 1.21667 0.96249 1.00266 0.97895 1.21631 0.98334 1.01138 0.94592 1.20293 0.90934 1.01059 0.99019 1.22804 0.84756 0.92004 0.97727 1.21193 1.02112 1.09843 0.95431 1.21488 0.96276 1.05500 1.00865 1.23814 1.00848 1.03630 0.86927 1.84475 1.29672 1.56088 1.30008 0.92386 0.86070 0.90244 0.90547 0.91479 0.91795 0.91523 0.91891 0.90052 0.89796 0.84989 0.85202 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.64 10.45 55.43 0.58 -22.06 16 2 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.55 -15.29 8.91 -34.44 -0.31 -15.60 16 8 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 9 C 0.28 7.31 2.59 -29.03 -0.08 7.24 16 10 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 11 O -0.33 -8.38 8.58 -42.80 -0.37 -8.75 16 12 C 0.49 11.46 7.81 34.26 0.27 11.72 16 13 O -0.53 -13.42 15.22 -19.29 -0.29 -13.71 16 14 C -0.13 -2.41 5.79 -103.25 -0.60 -3.01 16 15 C -0.10 -1.52 9.42 -36.47 -0.34 -1.86 16 16 C -0.09 -1.01 6.11 -28.09 -0.17 -1.18 16 17 C -0.12 -1.36 6.01 -26.46 -0.16 -1.52 16 18 C -0.12 -1.47 5.99 -26.55 -0.16 -1.63 16 19 C -0.08 -1.25 5.44 -28.17 -0.15 -1.40 16 20 C 0.08 2.04 5.68 -35.63 -0.20 1.83 16 21 C -0.27 -5.98 10.80 -39.70 -0.43 -6.41 16 22 C -0.22 -4.43 10.91 -39.70 -0.43 -4.86 16 23 C -0.08 -1.70 12.09 29.42 0.36 -1.34 16 24 O -0.11 -2.78 8.63 4.46 0.04 -2.74 16 25 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.12 1.99 7.17 -52.49 -0.38 1.61 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.48 7.93 -51.93 -0.41 1.06 16 35 H 0.13 2.69 8.06 -52.49 -0.42 2.26 16 36 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 37 H 0.18 2.93 8.06 -52.49 -0.42 2.50 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -31.07 316.01 -7.73 -38.80 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.93 Total: 3.63 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.50 Total: -15.94 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: 0.58 Total: -22.06 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.62 Total: -25.20 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.07 -7.73 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347948476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.015 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds