Wall clock time and date at job start Mon Mar 30 2020 01:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86806 * 120.00065 * 2 1 4 4 H 1.48494 * 109.47076 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47238 * 300.00202 * 3 2 1 6 6 H 1.48498 * 109.46836 * 59.99771 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00120 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99994 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47195 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47117 * 300.00196 * 9 7 2 12 12 C 1.34797 * 116.99742 * 270.00068 * 11 9 7 13 13 O 1.21534 * 120.00012 * 0.02562 * 12 11 9 14 14 C 1.46952 * 120.00155 * 179.97438 * 12 11 9 15 15 C 1.31645 * 118.11387 * 179.97438 * 14 12 11 16 16 C 1.50093 * 123.77642 * 180.66357 * 15 14 12 17 17 C 1.53160 * 110.05163 * 342.38761 * 16 15 14 18 18 C 1.53361 * 108.36773 * 50.10988 * 17 16 15 19 19 C 1.50106 * 118.10730 * 359.97438 * 14 12 11 20 20 C 1.50697 * 109.46815 * 59.99883 * 9 7 2 21 21 C 1.34515 * 125.78928 * 99.72079 * 20 9 7 22 22 C 1.41383 * 106.84181 * 179.88340 * 21 20 9 23 23 C 1.34519 * 106.84073 * 0.37399 * 22 21 20 24 24 O 1.34304 * 108.41939 * 359.76714 * 23 22 21 25 25 H 0.97010 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.08002 * 118.10679 * 0.37323 * 15 14 12 27 27 H 1.08994 * 109.36569 * 102.77258 * 16 15 14 28 28 H 1.09005 * 109.35631 * 222.36686 * 16 15 14 29 29 H 1.09004 * 109.83252 * 290.37573 * 17 16 15 30 30 H 1.08995 * 109.73980 * 169.79343 * 17 16 15 31 31 H 1.08999 * 109.62947 * 172.07823 * 18 17 16 32 32 H 1.08995 * 109.63428 * 51.49211 * 18 17 16 33 33 H 1.09003 * 109.35278 * 283.05106 * 19 14 12 34 34 H 1.08995 * 109.35873 * 42.77961 * 19 14 12 35 35 H 1.08000 * 126.57657 * 0.02562 * 21 20 9 36 36 H 1.08001 * 126.57780 * 180.16181 * 22 21 20 37 37 H 1.07994 * 125.78479 * 179.75164 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 1.9593 -3.3277 -0.0015 11 8 0.4157 -2.5769 1.1835 12 6 0.9643 -3.1301 2.2835 13 8 2.1094 -3.5359 2.2530 14 6 0.1780 -3.2414 3.5200 15 6 0.7502 -3.7884 4.5719 16 6 0.0618 -3.9783 5.8920 17 6 -1.1786 -3.0833 5.9709 18 6 -2.0088 -3.2946 4.6990 19 6 -1.2314 -2.7250 3.5108 20 6 0.3851 -2.5781 -1.2325 21 6 0.6796 -3.2504 -2.3598 22 6 -0.4041 -3.0571 -3.2470 23 6 -1.2923 -2.2714 -2.6120 24 8 -0.8090 -1.9844 -1.3922 25 1 -0.4850 0.8402 0.0004 26 1 1.7726 -4.1238 4.4781 27 1 -0.2342 -5.0219 5.9983 28 1 0.7469 -3.7152 6.6979 29 1 -0.8766 -2.0383 6.0416 30 1 -1.7720 -3.3528 6.8445 31 1 -2.9632 -2.7767 4.7943 32 1 -2.1809 -4.3601 4.5467 33 1 -1.2178 -1.6370 3.5762 34 1 -1.7202 -3.0253 2.5840 35 1 1.5716 -3.8290 -2.5496 36 1 -0.4988 -3.4600 -4.2446 37 1 -2.2340 -1.9292 -3.0149 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347948476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:50 Heat of formation + Delta-G solvation = -82.462268 kcal Electronic energy + Delta-G solvation = -21681.110723 eV Core-core repulsion = 18389.509365 eV Total energy + Delta-G solvation = -3291.601357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.05267 -41.17975 -38.94848 -37.24329 -34.94346 -33.58657 -32.43532 -31.76706 -31.38723 -28.42343 -25.71601 -24.54162 -23.76806 -22.37163 -21.75698 -21.22736 -19.23239 -18.68431 -18.25640 -18.13767 -17.16755 -16.91078 -16.33036 -16.26184 -15.60092 -15.13572 -14.76702 -14.63759 -14.37307 -14.08990 -13.59791 -13.48983 -13.37644 -13.28900 -13.19795 -13.06708 -12.95744 -12.84084 -12.23183 -11.89497 -11.79369 -11.64025 -11.29714 -11.13677 -10.95359 -10.80348 -10.50882 -10.04769 -9.10862 -8.24337 -6.54952 0.31952 1.15806 1.33441 1.35197 1.46532 1.88641 2.10187 2.29726 2.31250 2.58857 3.05451 3.73039 3.79536 4.08394 4.16071 4.26724 4.30678 4.37490 4.40555 4.45160 4.63964 4.67052 4.70356 4.90304 5.05583 5.07712 5.11630 5.17112 5.21299 5.28623 5.40937 5.48009 5.50102 5.54676 5.72395 5.78121 5.87895 5.94049 6.48153 6.70643 7.08809 7.23596 8.73587 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006511 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.058647 B = 4299.479745 C = 5033.513648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.041 3.959 3 Si 0.957 3.043 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.579 4.579 8 H 0.057 0.943 9 C 0.275 3.725 10 H 0.054 0.946 11 O -0.340 6.340 12 C 0.477 3.523 13 O -0.567 6.567 14 C -0.170 4.170 15 C -0.059 4.059 16 C -0.088 4.088 17 C -0.121 4.121 18 C -0.112 4.112 19 C -0.068 4.068 20 C 0.040 3.960 21 C -0.266 4.266 22 C -0.218 4.218 23 C -0.083 4.083 24 O -0.140 6.140 25 H 0.269 0.731 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.145 0.855 36 H 0.171 0.829 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.572 -5.441 7.545 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.615 4.615 8 H 0.076 0.924 9 C 0.223 3.777 10 H 0.072 0.928 11 O -0.254 6.254 12 C 0.326 3.674 13 O -0.462 6.462 14 C -0.171 4.171 15 C -0.077 4.077 16 C -0.124 4.124 17 C -0.158 4.158 18 C -0.150 4.150 19 C -0.106 4.106 20 C -0.013 4.013 21 C -0.286 4.286 22 C -0.237 4.237 23 C -0.151 4.151 24 O -0.033 6.033 25 H 0.078 0.922 26 H 0.128 0.872 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.162 0.838 36 H 0.189 0.811 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.593 -5.250 7.684 11.406 hybrid contribution 1.144 0.884 -0.901 1.704 sum -5.449 -4.366 6.783 9.735 Atomic orbital electron populations 1.70164 1.06516 1.27790 1.42812 1.25814 0.95928 1.02392 0.92678 0.85535 0.79007 0.79041 0.78348 1.19588 1.19481 1.19702 1.21393 0.92964 0.90909 1.56199 0.92437 1.18620 0.85377 0.97029 0.76712 0.92848 1.86803 1.47019 1.70746 1.20873 1.22322 0.85585 0.73261 0.86261 1.90664 1.20447 1.49480 1.85654 1.20391 0.98138 1.07734 0.90848 1.23257 0.99421 0.90668 0.94377 1.20743 0.97360 1.02248 0.92067 1.21698 0.96102 0.99750 0.98249 1.21624 0.98522 1.01611 0.93199 1.20203 0.90234 0.99898 1.00227 1.22669 0.85851 0.94646 0.98146 1.21586 1.03158 1.08752 0.95074 1.21895 0.94710 1.04960 1.02100 1.24765 1.02209 1.02799 0.85319 1.84407 1.29774 1.56844 1.32290 0.92187 0.87192 0.87307 0.87924 0.92370 0.88272 0.89917 0.90811 0.92125 0.92270 0.83755 0.81125 0.75820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.52 10.45 21.45 0.22 -47.30 16 2 C 0.04 2.28 5.24 84.65 0.44 2.72 16 3 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.58 -34.08 8.91 25.60 0.23 -33.86 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.28 15.48 2.59 29.10 0.08 15.56 16 10 H 0.05 3.03 7.15 -2.39 -0.02 3.02 16 11 O -0.34 -18.62 8.58 -55.13 -0.47 -19.09 16 12 C 0.48 23.74 7.81 70.10 0.55 24.29 16 13 O -0.57 -30.35 15.22 19.73 0.30 -30.05 16 14 C -0.17 -6.47 5.79 -18.41 -0.11 -6.58 16 15 C -0.06 -1.78 9.42 24.85 0.23 -1.54 16 16 C -0.09 -1.66 6.11 29.71 0.18 -1.48 16 17 C -0.12 -2.22 6.01 30.77 0.18 -2.04 16 18 C -0.11 -2.52 5.99 30.71 0.18 -2.34 16 19 C -0.07 -2.31 5.44 29.66 0.16 -2.15 16 20 C 0.04 2.08 5.68 24.83 0.14 2.22 16 21 C -0.27 -12.05 10.80 22.19 0.24 -11.81 16 22 C -0.22 -8.29 10.91 22.19 0.24 -8.04 16 23 C -0.08 -3.27 12.09 66.97 0.81 -2.47 16 24 O -0.14 -7.15 8.63 -1.36 -0.01 -7.16 16 25 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 26 H 0.11 3.59 7.17 -2.91 -0.02 3.57 16 27 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.20 8.12 -2.39 -0.02 1.18 16 30 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 33 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 35 H 0.14 5.96 8.06 -2.91 -0.02 5.93 16 36 H 0.17 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.23 6.55 8.06 -2.91 -0.02 6.53 16 Total: -1.00 -72.15 316.01 6.70 -65.46 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.06 Total: 19.53 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.57 Total: -27.51 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: 0.22 Total: -47.30 kcal Atomic # 8 Polarization: -56.12 SS G_CDS: -0.18 Total: -56.30 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -72.15 6.70 -65.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347948476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.006 kcal (2) G-P(sol) polarization free energy of solvation -72.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds