Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48507 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47038 * 299.99776 * 3 2 1 6 6 H 1.48491 * 109.47334 * 60.00227 * 3 2 1 7 7 C 1.37874 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00629 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99824 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47012 * 300.00276 * 9 7 2 11 11 O 1.45198 * 109.47149 * 179.97438 * 9 7 2 12 12 C 1.34234 * 116.99790 * 149.99794 * 11 9 7 13 13 O 1.20822 * 120.00128 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99624 * 180.02562 * 12 11 9 15 15 C 1.53004 * 119.29831 * 250.51906 * 14 12 11 16 16 C 1.52997 * 60.37921 * 248.69897 * 15 14 12 17 17 H 1.08999 * 119.29981 * 112.24573 * 16 15 14 18 18 C 1.54268 * 118.20099 * 266.38227 * 16 15 14 19 19 C 1.54897 * 104.19359 * 40.57179 * 18 16 15 20 20 C 1.54268 * 117.76457 * 45.71225 * 14 12 11 21 21 C 1.50699 * 109.46978 * 59.99906 * 9 7 2 22 22 C 1.34516 * 125.79032 * 265.00252 * 21 9 7 23 23 C 1.41385 * 106.83987 * 180.02562 * 22 21 9 24 24 C 1.34517 * 106.83951 * 359.97438 * 23 22 21 25 25 O 1.34296 * 108.42332 * 359.73890 * 24 23 22 26 26 H 0.96997 * 119.99853 * 359.97438 * 1 2 3 27 27 H 1.08998 * 117.46070 * 141.09777 * 15 14 12 28 28 H 1.08997 * 117.44073 * 356.30910 * 15 14 12 29 29 H 1.08999 * 110.49069 * 281.89696 * 18 16 15 30 30 H 1.08996 * 110.48777 * 159.25000 * 18 16 15 31 31 H 1.08994 * 110.75328 * 156.26004 * 19 18 16 32 32 H 1.09004 * 110.75215 * 279.62712 * 19 18 16 33 33 H 1.09003 * 110.48471 * 45.28735 * 20 14 12 34 34 H 1.09004 * 110.48268 * 282.64501 * 20 14 12 35 35 H 1.07999 * 126.57807 * 359.95766 * 22 21 9 36 36 H 1.07997 * 126.58371 * 179.97438 * 23 22 21 37 37 H 1.08001 * 125.78568 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6028 -0.0018 12 6 1.8037 -4.7393 0.5961 13 8 0.7093 -4.8098 1.1032 14 6 2.7300 -5.9273 0.6348 15 6 2.4043 -7.1586 -0.2131 16 6 2.3135 -7.2449 1.3117 17 1 1.3382 -7.3716 1.7817 18 6 3.5469 -7.7507 2.0881 19 6 4.7471 -7.0865 1.3686 20 6 4.2021 -5.6785 1.0233 21 6 0.3841 -2.5787 -1.2307 22 6 -0.9145 -2.2352 -1.3015 23 6 -1.3278 -2.4683 -2.6333 24 6 -0.2569 -2.9398 -3.2968 25 8 0.7787 -2.9988 -2.4438 26 1 -0.4850 0.8400 0.0004 27 1 3.2364 -7.6702 -0.6968 28 1 1.4690 -7.1500 -0.7727 29 1 3.6181 -8.8365 2.0257 30 1 3.5007 -7.4296 3.1287 31 1 5.6061 -7.0154 2.0358 32 1 5.0050 -7.6340 0.4620 33 1 4.2617 -5.0228 1.8921 34 1 4.7513 -5.2521 0.1839 35 1 -1.5246 -1.8554 -0.4953 36 1 -2.3141 -2.3002 -3.0399 37 1 -0.2329 -3.2195 -4.3397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347949229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -47.126799 kcal Electronic energy + Delta-G solvation = -21666.524562 eV Core-core repulsion = 18376.455466 eV Total energy + Delta-G solvation = -3290.069097 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.33623 -40.36183 -38.51009 -35.62000 -33.29460 -31.67448 -31.33620 -29.74580 -28.42939 -26.65689 -24.37547 -23.09024 -21.89657 -20.54326 -19.75171 -19.47245 -18.72415 -17.24644 -16.69267 -16.60086 -15.58495 -15.16359 -15.02961 -14.85688 -14.47443 -14.01046 -13.31174 -12.97107 -12.90908 -12.53508 -12.19999 -11.90911 -11.67996 -11.56431 -11.23710 -11.15140 -11.11243 -11.08619 -11.03831 -10.94551 -10.36763 -10.27219 -10.08937 -9.64019 -9.47886 -9.38615 -8.82799 -8.63541 -7.23770 -6.20961 -4.40035 2.79064 2.88330 3.20148 3.26176 3.30530 3.46619 3.77443 3.96528 4.20057 4.26816 4.44029 4.56938 4.88964 5.05793 5.11189 5.25497 5.38300 5.46449 5.56780 5.68591 5.81098 5.84824 5.87619 5.97482 6.06166 6.08706 6.20123 6.25866 6.30439 6.41022 6.73505 7.00757 7.18521 7.25414 7.40746 7.69812 7.73560 7.86308 8.37969 8.53884 8.80951 9.27024 10.76490 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.006064 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.836061 B = 4616.472891 C = 5562.919387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.297 3.703 10 H 0.077 0.923 11 O -0.340 6.340 12 C 0.497 3.503 13 O -0.517 6.517 14 C -0.148 4.148 15 C -0.122 4.122 16 C -0.134 4.134 17 H 0.120 0.880 18 C -0.096 4.096 19 C -0.130 4.130 20 C -0.080 4.080 21 C 0.021 3.979 22 C -0.176 4.176 23 C -0.219 4.219 24 C -0.090 4.090 25 O -0.178 6.178 26 H 0.268 0.732 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.130 0.870 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -11.913 -0.083 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.565 4.565 8 H 0.097 0.903 9 C 0.244 3.756 10 H 0.095 0.905 11 O -0.256 6.256 12 C 0.339 3.661 13 O -0.406 6.406 14 C -0.149 4.149 15 C -0.159 4.159 16 C -0.152 4.152 17 H 0.138 0.862 18 C -0.133 4.133 19 C -0.167 4.167 20 C -0.118 4.118 21 C -0.030 4.030 22 C -0.195 4.195 23 C -0.238 4.238 24 C -0.158 4.158 25 O -0.075 6.075 26 H 0.078 0.922 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.064 -11.833 0.005 12.871 hybrid contribution -0.298 1.347 -0.288 1.409 sum 4.766 -10.487 -0.283 11.522 Atomic orbital electron populations 1.70039 1.05944 1.27514 1.46781 1.24950 0.95142 0.99578 0.94045 0.86176 0.80024 0.81950 0.77806 1.19260 1.20659 1.20534 1.20940 0.94192 0.87535 1.53849 0.90344 1.19203 0.85695 0.81891 0.88825 0.90537 1.86543 1.48249 1.21738 1.69077 1.22057 0.85291 0.83948 0.74762 1.90604 1.22596 1.83327 1.44079 1.21718 0.96442 0.87255 1.09524 1.22980 1.03490 0.96377 0.93075 1.23331 1.00398 0.97196 0.94297 0.86228 1.21966 0.92341 1.00007 0.99008 1.22545 0.97679 0.95964 1.00507 1.21813 0.90794 0.97193 1.01971 1.23572 0.94402 0.99828 0.85168 1.21295 0.95198 1.05977 0.97047 1.21716 0.99327 1.07127 0.95656 1.23600 0.86677 1.09716 0.95772 1.83991 1.37343 1.67033 1.19087 0.92207 0.87800 0.87798 0.91044 0.90595 0.90824 0.91097 0.90347 0.90223 0.83672 0.85163 0.79912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.11 10.48 55.43 0.58 -23.53 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.74 8.89 -34.44 -0.31 -15.04 16 8 H 0.08 2.15 7.81 -52.49 -0.41 1.74 16 9 C 0.30 8.04 2.41 -29.03 -0.07 7.97 16 10 H 0.08 2.22 7.16 -51.93 -0.37 1.85 16 11 O -0.34 -8.34 9.79 -42.03 -0.41 -8.75 16 12 C 0.50 10.83 7.56 36.00 0.27 11.10 16 13 O -0.52 -12.52 16.01 -18.75 -0.30 -12.82 16 14 C -0.15 -2.41 2.87 -154.54 -0.44 -2.85 16 15 C -0.12 -1.63 9.61 -26.73 -0.26 -1.89 16 16 C -0.13 -1.78 6.67 -89.50 -0.60 -2.38 16 17 H 0.12 1.68 8.14 -51.93 -0.42 1.25 16 18 C -0.10 -0.98 6.77 -25.07 -0.17 -1.15 16 19 C -0.13 -1.30 6.43 -24.74 -0.16 -1.46 16 20 C -0.08 -1.09 6.46 -25.08 -0.16 -1.25 16 21 C 0.02 0.56 5.67 -35.62 -0.20 0.36 16 22 C -0.18 -4.47 9.04 -39.70 -0.36 -4.83 16 23 C -0.22 -4.77 10.91 -39.70 -0.43 -5.21 16 24 C -0.09 -1.89 12.09 29.42 0.36 -1.54 16 25 O -0.18 -4.45 10.63 2.16 0.02 -4.43 16 26 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.10 1.12 7.21 -51.93 -0.37 0.74 16 28 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.64 7.38 -51.93 -0.38 0.26 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.15 3.80 7.49 -52.49 -0.39 3.41 16 36 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 37 H 0.18 2.90 8.06 -52.49 -0.42 2.48 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -31.41 316.89 -7.85 -39.26 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -4.87 Total: 5.91 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -2.62 Total: -16.40 kcal Atomic # 7 Polarization: -24.11 SS G_CDS: 0.58 Total: -23.53 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.69 Total: -25.99 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.41 -7.85 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.871 kcal (2) G-P(sol) polarization free energy of solvation -31.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds