Wall clock time and date at job start Mon Mar 30 2020 01:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48507 * 109.46892 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47038 * 299.99776 * 3 2 1 6 6 H 1.48491 * 109.47334 * 60.00227 * 3 2 1 7 7 C 1.37874 * 120.00249 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00629 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99824 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.47012 * 300.00276 * 9 7 2 11 11 O 1.45198 * 109.47149 * 179.97438 * 9 7 2 12 12 C 1.34234 * 116.99790 * 149.99794 * 11 9 7 13 13 O 1.20822 * 120.00128 * 0.02562 * 12 11 9 14 14 C 1.50695 * 119.99624 * 180.02562 * 12 11 9 15 15 C 1.53004 * 119.29831 * 250.51906 * 14 12 11 16 16 C 1.52997 * 60.37921 * 248.69897 * 15 14 12 17 17 H 1.08999 * 119.29981 * 112.24573 * 16 15 14 18 18 C 1.54268 * 118.20099 * 266.38227 * 16 15 14 19 19 C 1.54897 * 104.19359 * 40.57179 * 18 16 15 20 20 C 1.54268 * 117.76457 * 45.71225 * 14 12 11 21 21 C 1.50699 * 109.46978 * 59.99906 * 9 7 2 22 22 C 1.34516 * 125.79032 * 265.00252 * 21 9 7 23 23 C 1.41385 * 106.83987 * 180.02562 * 22 21 9 24 24 C 1.34517 * 106.83951 * 359.97438 * 23 22 21 25 25 O 1.34296 * 108.42332 * 359.73890 * 24 23 22 26 26 H 0.96997 * 119.99853 * 359.97438 * 1 2 3 27 27 H 1.08998 * 117.46070 * 141.09777 * 15 14 12 28 28 H 1.08997 * 117.44073 * 356.30910 * 15 14 12 29 29 H 1.08999 * 110.49069 * 281.89696 * 18 16 15 30 30 H 1.08996 * 110.48777 * 159.25000 * 18 16 15 31 31 H 1.08994 * 110.75328 * 156.26004 * 19 18 16 32 32 H 1.09004 * 110.75215 * 279.62712 * 19 18 16 33 33 H 1.09003 * 110.48471 * 45.28735 * 20 14 12 34 34 H 1.09004 * 110.48268 * 282.64501 * 20 14 12 35 35 H 1.07999 * 126.57807 * 359.95766 * 22 21 9 36 36 H 1.07997 * 126.58371 * 179.97438 * 23 22 21 37 37 H 1.08001 * 125.78568 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 2.1946 -3.6028 -0.0018 12 6 1.8037 -4.7393 0.5961 13 8 0.7093 -4.8098 1.1032 14 6 2.7300 -5.9273 0.6348 15 6 2.4043 -7.1586 -0.2131 16 6 2.3135 -7.2449 1.3117 17 1 1.3382 -7.3716 1.7817 18 6 3.5469 -7.7507 2.0881 19 6 4.7471 -7.0865 1.3686 20 6 4.2021 -5.6785 1.0233 21 6 0.3841 -2.5787 -1.2307 22 6 -0.9145 -2.2352 -1.3015 23 6 -1.3278 -2.4683 -2.6333 24 6 -0.2569 -2.9398 -3.2968 25 8 0.7787 -2.9988 -2.4438 26 1 -0.4850 0.8400 0.0004 27 1 3.2364 -7.6702 -0.6968 28 1 1.4690 -7.1500 -0.7727 29 1 3.6181 -8.8365 2.0257 30 1 3.5007 -7.4296 3.1287 31 1 5.6061 -7.0154 2.0358 32 1 5.0050 -7.6340 0.4620 33 1 4.2617 -5.0228 1.8921 34 1 4.7513 -5.2521 0.1839 35 1 -1.5246 -1.8554 -0.4953 36 1 -2.3141 -2.3002 -3.0399 37 1 -0.2329 -3.2195 -4.3397 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347949229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:44 Heat of formation + Delta-G solvation = -64.294681 kcal Electronic energy + Delta-G solvation = -21667.269017 eV Core-core repulsion = 18376.455466 eV Total energy + Delta-G solvation = -3290.813552 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.21611 -41.80414 -39.98772 -37.49862 -35.35080 -33.56241 -32.33184 -31.65884 -29.56309 -28.59326 -25.89190 -24.63103 -23.39337 -22.39400 -21.40843 -20.65267 -20.28605 -18.97576 -18.49733 -18.30736 -17.41402 -16.82810 -16.74445 -16.37235 -16.11683 -15.39602 -14.78622 -14.63708 -14.09677 -14.02965 -13.63223 -13.53759 -13.46443 -13.32910 -13.04751 -13.02971 -12.84850 -12.25763 -12.13334 -12.08216 -11.95649 -11.91347 -11.50009 -11.39674 -11.11220 -10.85785 -10.61781 -10.54426 -9.15036 -8.26758 -6.57350 1.06574 1.13176 1.36828 1.38602 1.51531 1.80330 2.06735 2.35364 2.37572 2.59734 2.97032 3.39044 3.50035 3.74215 3.92233 4.14407 4.17565 4.37149 4.38335 4.45075 4.54778 4.57623 4.62043 4.69413 4.80998 4.98970 5.04927 5.12024 5.16401 5.24160 5.26273 5.31290 5.38013 5.43407 5.44273 5.62705 5.79798 5.91444 6.44476 6.54134 6.87503 7.14991 8.69342 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.006064 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.836061 B = 4616.472891 C = 5562.919387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.023 3.977 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.269 1.269 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.300 3.700 10 H 0.037 0.963 11 O -0.350 6.350 12 C 0.486 3.514 13 O -0.554 6.554 14 C -0.184 4.184 15 C -0.104 4.104 16 C -0.122 4.122 17 H 0.105 0.895 18 C -0.090 4.090 19 C -0.116 4.116 20 C -0.081 4.081 21 C -0.010 4.010 22 C -0.191 4.191 23 C -0.228 4.228 24 C -0.070 4.070 25 O -0.196 6.196 26 H 0.271 0.729 27 H 0.141 0.859 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.782 -13.238 -1.532 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.592 4.592 8 H 0.092 0.908 9 C 0.246 3.754 10 H 0.055 0.945 11 O -0.266 6.266 12 C 0.332 3.668 13 O -0.445 6.445 14 C -0.185 4.185 15 C -0.141 4.141 16 C -0.140 4.140 17 H 0.123 0.877 18 C -0.127 4.127 19 C -0.153 4.153 20 C -0.118 4.118 21 C -0.060 4.060 22 C -0.210 4.210 23 C -0.247 4.247 24 C -0.136 4.136 25 O -0.093 6.093 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.143 0.857 36 H 0.184 0.816 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 6.578 -13.181 -1.437 14.801 hybrid contribution -0.886 1.697 0.142 1.920 sum 5.691 -11.485 -1.294 12.883 Atomic orbital electron populations 1.70174 1.07267 1.28471 1.46655 1.25868 0.96093 1.02893 0.93145 0.85127 0.78882 0.77225 0.78170 1.18554 1.20073 1.19436 1.21171 0.94121 0.88667 1.55284 0.90825 1.18775 0.85652 0.82813 0.88159 0.94537 1.86536 1.47918 1.22373 1.69799 1.23311 0.85889 0.84354 0.73237 1.90561 1.24628 1.83811 1.45527 1.21972 0.97003 0.85848 1.13660 1.23137 1.04146 0.93577 0.93235 1.23558 1.01370 0.94236 0.94819 0.87673 1.22031 0.90403 1.01792 0.98444 1.22551 0.97919 0.93001 1.01819 1.21861 0.89087 0.99727 1.01162 1.23329 0.94795 1.02120 0.85798 1.21367 0.95014 1.06035 0.98606 1.22068 1.01464 1.07349 0.93856 1.24713 0.85018 1.06695 0.97186 1.83961 1.38964 1.67385 1.18982 0.91935 0.84135 0.89015 0.87903 0.90493 0.88717 0.89036 0.91948 0.90651 0.85673 0.81569 0.74209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.32 10.48 21.45 0.22 -51.10 16 2 C 0.02 1.29 5.30 84.65 0.45 1.74 16 3 Si 0.98 43.65 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.56 -32.55 8.89 25.60 0.23 -32.32 16 8 H 0.07 4.23 7.81 -2.92 -0.02 4.21 16 9 C 0.30 17.36 2.41 29.10 0.07 17.44 16 10 H 0.04 2.35 7.16 -2.39 -0.02 2.33 16 11 O -0.35 -18.32 9.79 -48.82 -0.48 -18.80 16 12 C 0.49 22.59 7.56 71.23 0.54 23.13 16 13 O -0.55 -28.95 16.01 21.98 0.35 -28.60 16 14 C -0.18 -6.02 2.87 -52.20 -0.15 -6.17 16 15 C -0.10 -2.62 9.61 30.59 0.29 -2.33 16 16 C -0.12 -3.10 6.67 -10.07 -0.07 -3.17 16 17 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 18 C -0.09 -1.56 6.77 31.67 0.21 -1.34 16 19 C -0.12 -1.92 6.43 31.89 0.21 -1.72 16 20 C -0.08 -2.15 6.46 31.67 0.20 -1.95 16 21 C -0.01 -0.56 5.67 24.83 0.14 -0.41 16 22 C -0.19 -10.06 9.04 22.19 0.20 -9.86 16 23 C -0.23 -9.72 10.91 22.19 0.24 -9.47 16 24 C -0.07 -2.78 12.09 66.97 0.81 -1.97 16 25 O -0.20 -9.84 10.63 0.91 0.01 -9.83 16 26 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.14 2.49 7.21 -2.39 -0.02 2.47 16 28 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.20 7.38 -2.38 -0.02 1.18 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.13 6.99 7.49 -2.91 -0.02 6.97 16 36 H 0.17 5.71 8.06 -2.91 -0.02 5.69 16 37 H 0.24 6.46 8.06 -2.91 -0.02 6.44 16 Total: -1.00 -73.96 316.89 6.58 -67.38 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 1.07 Total: 23.68 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 3.38 Total: -28.41 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.22 Total: -51.10 kcal Atomic # 8 Polarization: -57.12 SS G_CDS: -0.12 Total: -57.23 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -73.96 6.58 -67.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347949229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.082 kcal (2) G-P(sol) polarization free energy of solvation -73.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds