Wall clock time and date at job start Mon Mar 30 2020 02:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33081 * 120.00290 * 2 1 4 4 C 1.46952 * 119.99748 * 353.10651 * 3 2 1 5 5 O 1.21529 * 120.00514 * 353.76923 * 4 3 2 6 6 O 1.34809 * 119.99721 * 173.76810 * 4 3 2 7 7 C 1.45194 * 116.99606 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47593 * 330.00315 * 7 6 4 9 9 C 1.50706 * 109.47124 * 209.99625 * 7 6 4 10 10 H 1.07999 * 119.99776 * 359.73167 * 9 7 6 11 11 C 1.37872 * 119.99854 * 179.97438 * 9 7 6 12 12 N 1.31513 * 120.00561 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99799 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46848 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47052 * 120.00012 * 13 11 9 16 16 H 1.48496 * 109.47300 * 240.00567 * 13 11 9 17 17 C 1.50700 * 109.47054 * 90.00162 * 7 6 4 18 18 C 1.34521 * 125.79114 * 219.99895 * 17 7 6 19 19 C 1.41384 * 106.83880 * 180.02562 * 18 17 7 20 20 C 1.34510 * 106.84483 * 359.97438 * 19 18 17 21 21 O 1.34304 * 125.78968 * 39.69227 * 17 7 6 22 22 C 1.50698 * 119.99980 * 180.02562 * 2 1 3 23 23 C 1.53004 * 117.49904 * 8.74317 * 22 2 1 24 24 C 1.52998 * 117.50032 * 300.08489 * 22 2 1 25 25 H 1.08999 * 109.47408 * 84.53085 * 1 2 3 26 26 H 1.08999 * 109.47410 * 204.53340 * 1 2 3 27 27 H 1.09003 * 109.47106 * 324.53397 * 1 2 3 28 28 H 1.08000 * 120.00140 * 173.10717 * 3 2 1 29 29 H 0.96996 * 120.00326 * 179.97438 * 12 11 9 30 30 H 1.07993 * 126.57831 * 0.02968 * 18 17 7 31 31 H 1.08001 * 126.57612 * 179.97438 * 19 18 17 32 32 H 1.07998 * 125.79393 * 180.02562 * 20 19 18 33 33 H 1.09001 * 115.55452 * 154.41804 * 22 2 1 34 34 H 1.08994 * 117.49778 * 0.02562 * 23 22 2 35 35 H 1.09004 * 117.49794 * 145.02007 * 23 22 2 36 36 H 1.08998 * 117.50359 * 214.98297 * 24 22 2 37 37 H 1.09004 * 117.49737 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4456 2.4205 -0.1528 5 8 0.2541 2.4131 -0.3921 6 8 2.1006 3.5921 -0.0273 7 6 1.3192 4.8049 -0.1914 8 1 0.4958 4.6163 -0.8802 9 6 2.1975 5.8972 -0.7452 10 1 3.2397 5.7009 -0.9490 11 6 1.6715 7.1485 -0.9869 12 7 0.4036 7.3891 -0.7338 13 14 2.7599 8.5023 -1.6741 14 1 4.1358 7.9793 -1.8706 15 1 2.2150 8.9623 -2.9767 16 1 2.7942 9.6412 -0.7218 17 6 0.7685 5.2321 1.1448 18 6 -0.4628 5.7263 1.3665 19 6 -0.5541 5.9919 2.7522 20 6 0.6266 5.6437 3.2944 21 8 1.4218 5.1787 2.3170 22 6 2.2604 -1.3051 -0.0006 23 6 1.4520 -2.5875 -0.2075 24 6 2.0245 -2.2576 1.1733 25 1 -0.3634 0.0979 -1.0230 26 1 -0.3634 -0.9349 0.4267 27 1 -0.3633 0.8370 0.5963 28 1 3.2465 1.1558 0.1122 29 1 0.0337 8.2696 -0.9035 30 1 -1.2337 5.8888 0.6279 31 1 -1.4080 6.3967 3.2750 32 1 0.8890 5.7204 4.3392 33 1 3.2637 -1.2686 -0.4252 34 1 0.3752 -2.4872 -0.3435 35 1 1.9235 -3.3948 -0.7679 36 1 2.8723 -2.8479 1.5207 37 1 1.3246 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:18 Heat of formation + Delta-G solvation = -28.841893 kcal Electronic energy + Delta-G solvation = -21122.739489 eV Core-core repulsion = 17833.463285 eV Total energy + Delta-G solvation = -3289.276204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.31919 -39.61458 -38.08654 -35.79798 -33.23892 -33.03334 -31.68690 -29.70027 -27.81644 -26.58176 -24.47706 -22.81606 -22.54003 -20.81565 -20.35192 -19.29778 -18.32805 -17.15120 -16.79351 -16.30929 -15.83012 -15.27082 -15.03639 -14.74876 -14.46498 -14.23456 -13.28863 -13.01269 -12.88591 -12.66856 -12.00050 -11.89848 -11.77093 -11.58005 -11.54114 -11.41228 -11.17159 -11.09898 -10.99818 -10.95098 -10.59747 -10.32884 -9.99035 -9.40220 -9.35051 -8.84559 -8.79439 -8.63025 -7.23525 -6.19481 -4.36889 1.42755 2.89658 3.22040 3.28456 3.33217 3.46966 3.59945 3.80227 3.97708 4.22156 4.28682 4.62025 4.68659 4.77113 4.94687 5.09176 5.21214 5.42143 5.61798 5.67532 5.73243 5.86119 5.87465 5.90606 5.98630 6.07852 6.27191 6.37597 6.57302 6.62144 6.81339 7.01023 7.17644 7.25518 7.43381 7.71911 7.72638 7.89790 8.39239 8.56824 8.83413 9.29992 10.79488 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.004853 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.674701 B = 5768.657597 C = 6503.622902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.011 4.011 3 C -0.189 4.189 4 C 0.484 3.516 5 O -0.515 6.515 6 O -0.346 6.346 7 C 0.297 3.703 8 H 0.079 0.921 9 C -0.530 4.530 10 H 0.078 0.922 11 C 0.069 3.931 12 N -0.868 5.868 13 Si 0.913 3.087 14 H -0.268 1.268 15 H -0.280 1.280 16 H -0.281 1.281 17 C 0.028 3.972 18 C -0.180 4.180 19 C -0.217 4.217 20 C -0.089 4.089 21 O -0.177 6.177 22 C -0.128 4.128 23 C -0.173 4.173 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.092 0.908 28 H 0.135 0.865 29 H 0.268 0.732 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.184 0.816 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.221 -14.018 3.499 14.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 C -0.208 4.208 4 C 0.331 3.669 5 O -0.407 6.407 6 O -0.262 6.262 7 C 0.244 3.756 8 H 0.096 0.904 9 C -0.567 4.567 10 H 0.096 0.904 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.740 3.260 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.207 1.207 17 C -0.023 4.023 18 C -0.199 4.199 19 C -0.237 4.237 20 C -0.157 4.157 21 O -0.073 6.073 22 C -0.146 4.146 23 C -0.209 4.209 24 C -0.204 4.204 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.110 0.890 28 H 0.153 0.847 29 H 0.077 0.923 30 H 0.158 0.842 31 H 0.148 0.852 32 H 0.201 0.799 33 H 0.136 0.864 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.023 -13.915 3.452 14.373 hybrid contribution 0.208 1.279 -0.129 1.303 sum 1.231 -12.635 3.323 13.123 Atomic orbital electron populations 1.21208 0.90781 1.02420 1.03878 1.21764 0.96147 0.92176 0.91100 1.21750 1.00780 0.89427 1.08883 1.21354 0.85755 0.85859 0.73976 1.90760 1.16264 1.88416 1.45284 1.86651 1.43751 1.15028 1.80749 1.19162 0.92483 0.78076 0.85889 0.90364 1.20949 0.97445 0.94405 1.43891 0.90404 1.24942 0.95533 0.98376 0.94798 1.70041 1.12207 1.22900 1.45128 0.86191 0.80475 0.80864 0.78513 1.19272 1.20558 1.20690 1.23568 0.90706 1.02417 0.85589 1.21203 0.98064 1.06138 0.94521 1.21681 0.98669 1.07825 0.95529 1.23598 0.91458 1.07306 0.93322 1.83997 1.41783 1.65516 1.16035 1.21228 1.00182 0.88503 1.04720 1.23077 1.00538 0.97685 0.99632 1.22997 1.03687 1.02019 0.91735 0.90050 0.92689 0.88965 0.84735 0.92255 0.84152 0.85181 0.79927 0.86449 0.87983 0.88341 0.88258 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 7.90 36.00 0.28 -1.50 16 2 C -0.01 -0.15 5.81 -101.15 -0.59 -0.74 16 3 C -0.19 -3.10 9.79 -37.85 -0.37 -3.47 16 4 C 0.48 10.38 7.72 34.26 0.26 10.64 16 5 O -0.51 -11.79 12.54 -19.29 -0.24 -12.04 16 6 O -0.35 -8.49 9.86 -42.89 -0.42 -8.91 16 7 C 0.30 8.03 2.42 -29.03 -0.07 7.96 16 8 H 0.08 2.24 7.15 -51.93 -0.37 1.87 16 9 C -0.53 -14.87 8.89 -34.44 -0.31 -15.18 16 10 H 0.08 2.16 7.81 -52.49 -0.41 1.75 16 11 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 12 N -0.87 -24.23 10.95 55.43 0.61 -23.62 16 13 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.03 0.75 5.54 -35.62 -0.20 0.55 16 18 C -0.18 -4.54 9.17 -39.70 -0.36 -4.90 16 19 C -0.22 -4.73 10.91 -39.70 -0.43 -5.16 16 20 C -0.09 -1.88 12.09 29.41 0.36 -1.52 16 21 O -0.18 -4.44 10.65 4.32 0.05 -4.40 16 22 C -0.13 -1.33 6.01 -91.77 -0.55 -1.89 16 23 C -0.17 -1.46 9.77 -26.69 -0.26 -1.72 16 24 C -0.17 -1.45 10.10 -26.70 -0.27 -1.72 16 25 H 0.08 1.17 8.05 -51.93 -0.42 0.76 16 26 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 27 H 0.09 1.56 6.12 -51.93 -0.32 1.24 16 28 H 0.13 1.93 8.06 -52.49 -0.42 1.50 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.14 3.61 7.87 -52.49 -0.41 3.20 16 31 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 32 H 0.18 2.91 8.06 -52.49 -0.42 2.49 16 33 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.86 6.42 -51.93 -0.33 0.53 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 321.07 15.07 4.84 4.84 Total: -1.00 -31.13 321.07 -7.48 -38.61 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -4.69 Total: 6.28 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -2.60 Total: -16.86 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.61 Total: -23.62 kcal Atomic # 8 Polarization: -24.72 SS G_CDS: -0.62 Total: -25.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.13 -7.48 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.767 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds