Wall clock time and date at job start Mon Mar 30 2020 02:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33081 * 120.00290 * 2 1 4 4 C 1.46952 * 119.99748 * 353.10651 * 3 2 1 5 5 O 1.21529 * 120.00514 * 353.76923 * 4 3 2 6 6 O 1.34809 * 119.99721 * 173.76810 * 4 3 2 7 7 C 1.45194 * 116.99606 * 179.97438 * 6 4 3 8 8 H 1.08997 * 109.47593 * 330.00315 * 7 6 4 9 9 C 1.50706 * 109.47124 * 209.99625 * 7 6 4 10 10 H 1.07999 * 119.99776 * 359.73167 * 9 7 6 11 11 C 1.37872 * 119.99854 * 179.97438 * 9 7 6 12 12 N 1.31513 * 120.00561 * 0.02562 * 11 9 7 13 13 Si 1.86806 * 119.99799 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46848 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47052 * 120.00012 * 13 11 9 16 16 H 1.48496 * 109.47300 * 240.00567 * 13 11 9 17 17 C 1.50700 * 109.47054 * 90.00162 * 7 6 4 18 18 C 1.34521 * 125.79114 * 219.99895 * 17 7 6 19 19 C 1.41384 * 106.83880 * 180.02562 * 18 17 7 20 20 C 1.34510 * 106.84483 * 359.97438 * 19 18 17 21 21 O 1.34304 * 125.78968 * 39.69227 * 17 7 6 22 22 C 1.50698 * 119.99980 * 180.02562 * 2 1 3 23 23 C 1.53004 * 117.49904 * 8.74317 * 22 2 1 24 24 C 1.52998 * 117.50032 * 300.08489 * 22 2 1 25 25 H 1.08999 * 109.47408 * 84.53085 * 1 2 3 26 26 H 1.08999 * 109.47410 * 204.53340 * 1 2 3 27 27 H 1.09003 * 109.47106 * 324.53397 * 1 2 3 28 28 H 1.08000 * 120.00140 * 173.10717 * 3 2 1 29 29 H 0.96996 * 120.00326 * 179.97438 * 12 11 9 30 30 H 1.07993 * 126.57831 * 0.02968 * 18 17 7 31 31 H 1.08001 * 126.57612 * 179.97438 * 19 18 17 32 32 H 1.07998 * 125.79393 * 180.02562 * 20 19 18 33 33 H 1.09001 * 115.55452 * 154.41804 * 22 2 1 34 34 H 1.08994 * 117.49778 * 0.02562 * 23 22 2 35 35 H 1.09004 * 117.49794 * 145.02007 * 23 22 2 36 36 H 1.08998 * 117.50359 * 214.98297 * 24 22 2 37 37 H 1.09004 * 117.49737 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4456 2.4205 -0.1528 5 8 0.2541 2.4131 -0.3921 6 8 2.1006 3.5921 -0.0273 7 6 1.3192 4.8049 -0.1914 8 1 0.4958 4.6163 -0.8802 9 6 2.1975 5.8972 -0.7452 10 1 3.2397 5.7009 -0.9490 11 6 1.6715 7.1485 -0.9869 12 7 0.4036 7.3891 -0.7338 13 14 2.7599 8.5023 -1.6741 14 1 4.1358 7.9793 -1.8706 15 1 2.2150 8.9623 -2.9767 16 1 2.7942 9.6412 -0.7218 17 6 0.7685 5.2321 1.1448 18 6 -0.4628 5.7263 1.3665 19 6 -0.5541 5.9919 2.7522 20 6 0.6266 5.6437 3.2944 21 8 1.4218 5.1787 2.3170 22 6 2.2604 -1.3051 -0.0006 23 6 1.4520 -2.5875 -0.2075 24 6 2.0245 -2.2576 1.1733 25 1 -0.3634 0.0979 -1.0230 26 1 -0.3634 -0.9349 0.4267 27 1 -0.3633 0.8370 0.5963 28 1 3.2465 1.1558 0.1122 29 1 0.0337 8.2696 -0.9035 30 1 -1.2337 5.8888 0.6279 31 1 -1.4080 6.3967 3.2750 32 1 0.8890 5.7204 4.3392 33 1 3.2637 -1.2686 -0.4252 34 1 0.3752 -2.4872 -0.3435 35 1 1.9235 -3.3948 -0.7679 36 1 2.8723 -2.8479 1.5207 37 1 1.3246 -1.9400 1.9462 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312939.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:17 Heat of formation + Delta-G solvation = -45.620147 kcal Electronic energy + Delta-G solvation = -21123.467048 eV Core-core repulsion = 17833.463285 eV Total energy + Delta-G solvation = -3290.003763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.18851 -41.26885 -39.11885 -37.51428 -35.28393 -34.23076 -33.56244 -31.62769 -29.17368 -28.47375 -25.89228 -24.53846 -23.20101 -22.49019 -22.04216 -21.10395 -19.60575 -18.95291 -18.56337 -18.01651 -17.14248 -16.84019 -16.76636 -16.47991 -16.23399 -15.41869 -14.88282 -14.52933 -14.36777 -14.02553 -13.65405 -13.53723 -13.48589 -13.19421 -13.04047 -12.99814 -12.82242 -12.49333 -12.27258 -12.18154 -11.95461 -11.86740 -11.36568 -11.32345 -10.99305 -10.82384 -10.53451 -9.98569 -9.13212 -8.25377 -6.54047 0.11440 1.08844 1.38388 1.39734 1.53064 1.90902 1.95202 2.13412 2.40521 2.43458 2.99680 3.00501 3.58132 3.80081 3.91685 4.06232 4.12207 4.21113 4.28178 4.38670 4.53999 4.63467 4.68074 4.69521 4.83086 4.99772 5.06321 5.11969 5.13667 5.28018 5.28286 5.38456 5.41954 5.43191 5.52261 5.67373 5.83628 5.97124 6.47449 6.58180 6.95039 7.18573 8.72119 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.004853 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.674701 B = 5768.657597 C = 6503.622902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.025 3.975 3 C -0.223 4.223 4 C 0.473 3.527 5 O -0.543 6.543 6 O -0.360 6.360 7 C 0.301 3.699 8 H 0.042 0.958 9 C -0.558 4.558 10 H 0.072 0.928 11 C 0.025 3.975 12 N -0.891 5.891 13 Si 0.982 3.018 14 H -0.263 1.263 15 H -0.269 1.269 16 H -0.276 1.276 17 C -0.002 4.002 18 C -0.193 4.193 19 C -0.226 4.226 20 C -0.072 4.072 21 O -0.197 6.197 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.156 4.156 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.154 0.846 29 H 0.271 0.729 30 H 0.122 0.878 31 H 0.167 0.833 32 H 0.240 0.760 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -15.366 4.822 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.024 3.976 3 C -0.242 4.242 4 C 0.323 3.677 5 O -0.436 6.436 6 O -0.277 6.277 7 C 0.247 3.753 8 H 0.060 0.940 9 C -0.595 4.595 10 H 0.090 0.910 11 C -0.178 4.178 12 N -0.526 5.526 13 Si 0.805 3.195 14 H -0.187 1.187 15 H -0.194 1.194 16 H -0.201 1.201 17 C -0.053 4.053 18 C -0.213 4.213 19 C -0.245 4.245 20 C -0.138 4.138 21 O -0.094 6.094 22 C -0.169 4.169 23 C -0.197 4.197 24 C -0.193 4.193 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.172 0.828 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.184 0.816 32 H 0.256 0.744 33 H 0.150 0.850 34 H 0.120 0.880 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.943 -15.287 4.776 16.133 hybrid contribution -0.201 1.534 -0.473 1.618 sum 1.742 -13.753 4.303 14.515 Atomic orbital electron populations 1.21197 0.91252 1.02880 1.03194 1.22161 0.96077 0.93184 0.86195 1.21712 1.01524 0.87513 1.13471 1.22328 0.85933 0.86333 0.73155 1.90737 1.17461 1.88606 1.46835 1.86627 1.44064 1.15559 1.81444 1.18730 0.91428 0.78977 0.86186 0.94007 1.21191 0.97377 0.95571 1.45354 0.91020 1.25835 0.96954 1.00372 0.94679 1.70168 1.13606 1.23460 1.45335 0.85152 0.78754 0.77541 0.78098 1.18681 1.19429 1.20109 1.23342 0.91488 1.04435 0.86021 1.21281 0.97387 1.06284 0.96327 1.22038 1.00487 1.08181 0.93783 1.24694 0.90409 1.04108 0.94589 1.83966 1.42778 1.66315 1.16319 1.21319 1.00942 0.87137 1.07490 1.23225 1.00475 0.96398 0.99566 1.23129 1.04259 1.00477 0.91395 0.90524 0.89184 0.92173 0.82832 0.92001 0.85975 0.81553 0.74375 0.85021 0.87956 0.86132 0.86076 0.88698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 7.90 71.23 0.56 -3.06 16 2 C 0.02 0.66 5.81 -17.61 -0.10 0.56 16 3 C -0.22 -7.51 9.79 23.40 0.23 -7.28 16 4 C 0.47 21.65 7.72 70.10 0.54 22.19 16 5 O -0.54 -26.80 12.54 19.74 0.25 -26.56 16 6 O -0.36 -18.89 9.86 -55.20 -0.54 -19.44 16 7 C 0.30 17.35 2.42 29.10 0.07 17.42 16 8 H 0.04 2.65 7.15 -2.39 -0.02 2.63 16 9 C -0.56 -32.85 8.89 25.60 0.23 -32.62 16 10 H 0.07 4.16 7.81 -2.91 -0.02 4.14 16 11 C 0.02 1.39 5.30 84.65 0.45 1.84 16 12 N -0.89 -51.41 10.95 21.45 0.23 -51.18 16 13 Si 0.98 43.88 29.54 68.60 2.03 45.91 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 17 C 0.00 -0.13 5.54 24.83 0.14 0.01 16 18 C -0.19 -10.09 9.17 22.19 0.20 -9.89 16 19 C -0.23 -9.57 10.91 22.19 0.24 -9.33 16 20 C -0.07 -2.88 12.09 66.97 0.81 -2.07 16 21 O -0.20 -9.97 10.65 -1.25 -0.01 -9.99 16 22 C -0.15 -2.74 6.01 -11.54 -0.07 -2.81 16 23 C -0.16 -2.13 9.77 30.62 0.30 -1.83 16 24 C -0.16 -2.14 10.10 30.62 0.31 -1.83 16 25 H 0.08 2.26 8.05 -2.39 -0.02 2.24 16 26 H 0.09 1.85 6.31 -2.39 -0.02 1.84 16 27 H 0.06 2.13 6.12 -2.39 -0.01 2.11 16 28 H 0.15 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 30 H 0.12 6.70 7.87 -2.91 -0.02 6.67 16 31 H 0.17 5.67 8.06 -2.91 -0.02 5.65 16 32 H 0.24 6.53 8.06 -2.91 -0.02 6.51 16 33 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.10 1.38 6.42 -2.39 -0.02 1.36 16 35 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -72.49 321.07 6.94 -65.56 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 1.08 Total: 24.38 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.91 Total: -28.69 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: 0.23 Total: -51.18 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.31 Total: -55.98 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.49 6.94 -65.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312939.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.936 kcal (2) G-P(sol) polarization free energy of solvation -72.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds