Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33081 * 120.00363 * 2 1 4 4 C 1.46950 * 120.00118 * 172.95872 * 3 2 1 5 5 O 1.21531 * 120.00068 * 354.03793 * 4 3 2 6 6 O 1.34796 * 119.99706 * 174.03020 * 4 3 2 7 7 C 1.45205 * 117.00010 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46912 * 30.00191 * 7 6 4 9 9 C 1.50696 * 109.47422 * 150.00231 * 7 6 4 10 10 H 1.07999 * 119.99906 * 0.02562 * 9 7 6 11 11 C 1.37872 * 120.00341 * 180.02562 * 9 7 6 12 12 N 1.31519 * 119.99818 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00258 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47437 * 90.00019 * 13 11 9 15 15 H 1.48500 * 109.46969 * 210.00070 * 13 11 9 16 16 H 1.48501 * 109.47225 * 330.00026 * 13 11 9 17 17 C 1.50702 * 109.47031 * 270.00825 * 7 6 4 18 18 C 1.34513 * 125.79062 * 144.99895 * 17 7 6 19 19 C 1.41378 * 106.84007 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84555 * 359.97438 * 19 18 17 21 21 O 1.34304 * 125.78671 * 325.01408 * 17 7 6 22 22 C 1.50703 * 119.99577 * 179.97438 * 2 1 3 23 23 C 1.52992 * 117.49998 * 1.64472 * 22 2 1 24 24 C 1.52995 * 60.00140 * 252.51250 * 23 22 2 25 25 H 1.08998 * 109.47290 * 90.00065 * 1 2 3 26 26 H 1.09000 * 109.47506 * 210.00329 * 1 2 3 27 27 H 1.09005 * 109.47298 * 330.00420 * 1 2 3 28 28 H 1.08004 * 119.99762 * 352.95014 * 3 2 1 29 29 H 0.97001 * 120.00343 * 180.02562 * 12 11 9 30 30 H 1.07995 * 126.57885 * 359.97438 * 18 17 7 31 31 H 1.08001 * 126.58068 * 180.02562 * 19 18 17 32 32 H 1.08002 * 125.79589 * 179.97438 * 20 19 18 33 33 H 1.09003 * 115.54816 * 147.36316 * 22 2 1 34 34 H 1.08997 * 117.50273 * 0.02562 * 23 22 2 35 35 H 1.09004 * 117.49934 * 145.02767 * 23 22 2 36 36 H 1.09007 * 117.50419 * 252.50627 * 24 23 22 37 37 H 1.09005 * 117.52118 * 107.48529 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 3.6336 1.1572 0.1560 5 8 4.2228 0.1211 0.3932 6 8 4.3205 2.3108 0.0359 7 6 5.7613 2.2405 0.2017 8 1 6.1167 1.2616 -0.1200 9 6 6.4158 3.3115 -0.6322 10 1 5.8096 3.9786 -1.2271 11 6 7.7886 3.4398 -0.6359 12 7 8.5269 2.6271 0.0881 13 14 8.5999 4.7678 -1.6691 14 1 8.7348 6.0082 -0.8639 15 1 9.9449 4.3080 -2.0989 16 1 7.7650 5.0430 -2.8660 17 6 6.1107 2.4498 1.6526 18 6 7.1191 1.8527 2.3130 19 6 7.0812 2.3352 3.6414 20 6 6.0524 3.1987 3.7133 21 8 5.4680 3.2640 2.5057 22 6 2.2604 -1.3052 0.0006 23 6 1.4387 -2.5952 -0.0378 24 6 2.1539 -2.1818 1.2500 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6386 2.0843 -0.1148 29 1 9.4927 2.7175 0.0858 30 1 7.8221 1.1407 1.9067 31 1 7.7505 2.0633 4.4442 32 1 5.7474 3.7460 4.5930 33 1 3.2126 -1.2985 -0.5298 34 1 0.3533 -2.5000 -0.0639 35 1 1.8503 -3.4377 -0.5937 36 1 3.0358 -2.7522 1.5414 37 1 1.5391 -1.8143 2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350312942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = -26.977540 kcal Electronic energy + Delta-G solvation = -21320.006638 eV Core-core repulsion = 18030.811279 eV Total energy + Delta-G solvation = -3289.195359 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29938 -39.61033 -37.82799 -35.52198 -33.37091 -33.19440 -31.64732 -29.69943 -28.12767 -26.58864 -23.94781 -22.74188 -22.24703 -20.93572 -20.40675 -19.32744 -18.31597 -17.18742 -16.61129 -16.45831 -15.62208 -15.32701 -14.88691 -14.68119 -14.42211 -13.64780 -13.56755 -13.19863 -12.92124 -12.61555 -12.28393 -11.97725 -11.72863 -11.55900 -11.49335 -11.27378 -11.20779 -11.04062 -10.96440 -10.71396 -10.38451 -10.24421 -10.01287 -9.43057 -9.24784 -8.82019 -8.77437 -8.60641 -7.20727 -6.18597 -4.37615 1.44132 2.92170 3.23079 3.28065 3.31391 3.54019 3.65865 4.00696 4.05487 4.23531 4.30709 4.62299 4.91464 5.07179 5.08944 5.18379 5.24809 5.46455 5.57353 5.64821 5.71319 5.81210 5.88776 5.96831 6.10063 6.18245 6.34536 6.39074 6.48518 6.64852 6.82641 7.03858 7.21926 7.28428 7.44953 7.72440 7.76595 7.90533 8.41531 8.57571 8.84587 9.29365 10.78675 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.005353 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.616769 B = 5229.568052 C = 5861.884443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 C -0.188 4.188 4 C 0.484 3.516 5 O -0.511 6.511 6 O -0.347 6.347 7 C 0.299 3.701 8 H 0.078 0.922 9 C -0.529 4.529 10 H 0.077 0.923 11 C 0.069 3.931 12 N -0.868 5.868 13 Si 0.914 3.086 14 H -0.277 1.277 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.023 3.977 18 C -0.177 4.177 19 C -0.219 4.219 20 C -0.091 4.091 21 O -0.179 6.179 22 C -0.120 4.120 23 C -0.190 4.190 24 C -0.155 4.155 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.130 0.870 32 H 0.183 0.817 33 H 0.135 0.865 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.145 -5.523 1.957 13.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.015 4.015 3 C -0.207 4.207 4 C 0.330 3.670 5 O -0.403 6.403 6 O -0.263 6.263 7 C 0.246 3.754 8 H 0.095 0.905 9 C -0.566 4.566 10 H 0.095 0.905 11 C -0.137 4.137 12 N -0.503 5.503 13 Si 0.740 3.260 14 H -0.203 1.203 15 H -0.208 1.208 16 H -0.194 1.194 17 C -0.028 4.028 18 C -0.196 4.196 19 C -0.238 4.238 20 C -0.158 4.158 21 O -0.075 6.075 22 C -0.137 4.137 23 C -0.227 4.227 24 C -0.192 4.192 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.154 0.846 29 H 0.078 0.922 30 H 0.163 0.837 31 H 0.148 0.852 32 H 0.200 0.800 33 H 0.152 0.848 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.969 -5.666 1.995 13.391 hybrid contribution 1.092 0.777 -0.092 1.343 sum -10.876 -4.889 1.903 12.076 Atomic orbital electron populations 1.20968 0.90876 1.03224 1.02978 1.21807 0.95252 0.93147 0.91309 1.21840 0.91196 0.98984 1.08701 1.21387 0.89160 0.82513 0.73960 1.90751 1.71389 1.33080 1.45103 1.86642 1.25241 1.33797 1.80606 1.19148 0.71560 1.00448 0.84280 0.90477 1.20913 0.91450 1.17385 1.26866 0.90457 1.24940 0.96673 0.96628 0.95427 1.70033 1.06054 1.36445 1.37778 0.86232 0.78493 0.81045 0.80196 1.20325 1.20824 1.19385 1.23594 0.95498 0.91526 0.92156 1.21278 1.01020 1.05564 0.91726 1.21708 1.01047 1.02746 0.98332 1.23589 0.98814 1.05384 0.88036 1.83992 1.50542 1.54365 1.18622 1.21515 1.00673 0.87843 1.03712 1.23115 0.98865 0.98678 1.01992 1.22797 1.02634 1.02548 0.91252 0.90279 0.90857 0.90847 0.84581 0.92194 0.83704 0.85217 0.79970 0.84769 0.88756 0.88724 0.88440 0.89124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.49 36.00 0.34 -0.82 16 2 C -0.01 -0.20 5.81 -101.14 -0.59 -0.78 16 3 C -0.19 -3.06 9.75 -37.85 -0.37 -3.43 16 4 C 0.48 10.38 7.78 34.26 0.27 10.65 16 5 O -0.51 -11.75 12.57 -19.29 -0.24 -11.99 16 6 O -0.35 -8.51 9.85 -43.57 -0.43 -8.94 16 7 C 0.30 8.08 2.42 -29.04 -0.07 8.01 16 8 H 0.08 2.21 7.16 -51.93 -0.37 1.84 16 9 C -0.53 -14.83 8.89 -34.44 -0.31 -15.13 16 10 H 0.08 2.13 7.81 -52.49 -0.41 1.72 16 11 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 12 N -0.87 -24.13 10.48 55.43 0.58 -23.55 16 13 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 C 0.02 0.62 5.68 -35.62 -0.20 0.41 16 18 C -0.18 -4.49 9.04 -39.70 -0.36 -4.85 16 19 C -0.22 -4.80 10.91 -39.71 -0.43 -5.23 16 20 C -0.09 -1.92 12.09 29.41 0.36 -1.57 16 21 O -0.18 -4.50 10.63 2.00 0.02 -4.48 16 22 C -0.12 -1.73 4.35 -91.78 -0.40 -2.13 16 23 C -0.19 -2.07 9.79 -26.74 -0.26 -2.34 16 24 C -0.16 -2.00 10.23 -26.74 -0.27 -2.27 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.60 6.37 -51.93 -0.33 0.27 16 27 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 28 H 0.14 1.90 8.06 -52.48 -0.42 1.47 16 29 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.15 3.79 7.49 -52.49 -0.39 3.39 16 31 H 0.13 2.41 8.06 -52.49 -0.42 1.98 16 32 H 0.18 2.93 8.06 -52.49 -0.42 2.51 16 33 H 0.13 2.32 6.24 -51.93 -0.32 2.00 16 34 H 0.09 0.85 6.31 -51.93 -0.33 0.52 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 320.41 15.07 4.83 4.83 Total: -1.00 -31.20 320.41 -7.32 -38.52 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -4.67 Total: 7.25 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.39 Total: -17.69 kcal Atomic # 7 Polarization: -24.13 SS G_CDS: 0.58 Total: -23.55 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.65 Total: -25.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.20 -7.32 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.543 kcal (2) G-P(sol) polarization free energy of solvation -31.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds