Wall clock time and date at job start Mon Mar 30 2020 02:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33081 * 120.00363 * 2 1 4 4 C 1.46950 * 120.00118 * 172.95872 * 3 2 1 5 5 O 1.21531 * 120.00068 * 354.03793 * 4 3 2 6 6 O 1.34796 * 119.99706 * 174.03020 * 4 3 2 7 7 C 1.45205 * 117.00010 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.46912 * 30.00191 * 7 6 4 9 9 C 1.50696 * 109.47422 * 150.00231 * 7 6 4 10 10 H 1.07999 * 119.99906 * 0.02562 * 9 7 6 11 11 C 1.37872 * 120.00341 * 180.02562 * 9 7 6 12 12 N 1.31519 * 119.99818 * 0.02562 * 11 9 7 13 13 Si 1.86797 * 120.00258 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47437 * 90.00019 * 13 11 9 15 15 H 1.48500 * 109.46969 * 210.00070 * 13 11 9 16 16 H 1.48501 * 109.47225 * 330.00026 * 13 11 9 17 17 C 1.50702 * 109.47031 * 270.00825 * 7 6 4 18 18 C 1.34513 * 125.79062 * 144.99895 * 17 7 6 19 19 C 1.41378 * 106.84007 * 180.02562 * 18 17 7 20 20 C 1.34512 * 106.84555 * 359.97438 * 19 18 17 21 21 O 1.34304 * 125.78671 * 325.01408 * 17 7 6 22 22 C 1.50703 * 119.99577 * 179.97438 * 2 1 3 23 23 C 1.52992 * 117.49998 * 1.64472 * 22 2 1 24 24 C 1.52995 * 60.00140 * 252.51250 * 23 22 2 25 25 H 1.08998 * 109.47290 * 90.00065 * 1 2 3 26 26 H 1.09000 * 109.47506 * 210.00329 * 1 2 3 27 27 H 1.09005 * 109.47298 * 330.00420 * 1 2 3 28 28 H 1.08004 * 119.99762 * 352.95014 * 3 2 1 29 29 H 0.97001 * 120.00343 * 180.02562 * 12 11 9 30 30 H 1.07995 * 126.57885 * 359.97438 * 18 17 7 31 31 H 1.08001 * 126.58068 * 180.02562 * 19 18 17 32 32 H 1.08002 * 125.79589 * 179.97438 * 20 19 18 33 33 H 1.09003 * 115.54816 * 147.36316 * 22 2 1 34 34 H 1.08997 * 117.50273 * 0.02562 * 23 22 2 35 35 H 1.09004 * 117.49934 * 145.02767 * 23 22 2 36 36 H 1.09007 * 117.50419 * 252.50627 * 24 23 22 37 37 H 1.09005 * 117.52118 * 107.48529 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 3.6336 1.1572 0.1560 5 8 4.2228 0.1211 0.3932 6 8 4.3205 2.3108 0.0359 7 6 5.7613 2.2405 0.2017 8 1 6.1167 1.2616 -0.1200 9 6 6.4158 3.3115 -0.6322 10 1 5.8096 3.9786 -1.2271 11 6 7.7886 3.4398 -0.6359 12 7 8.5269 2.6271 0.0881 13 14 8.5999 4.7678 -1.6691 14 1 8.7348 6.0082 -0.8639 15 1 9.9449 4.3080 -2.0989 16 1 7.7650 5.0430 -2.8660 17 6 6.1107 2.4498 1.6526 18 6 7.1191 1.8527 2.3130 19 6 7.0812 2.3352 3.6414 20 6 6.0524 3.1987 3.7133 21 8 5.4680 3.2640 2.5057 22 6 2.2604 -1.3052 0.0006 23 6 1.4387 -2.5952 -0.0378 24 6 2.1539 -2.1818 1.2500 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6386 2.0843 -0.1148 29 1 9.4927 2.7175 0.0858 30 1 7.8221 1.1407 1.9067 31 1 7.7505 2.0633 4.4442 32 1 5.7474 3.7460 4.5930 33 1 3.2126 -1.2985 -0.5298 34 1 0.3533 -2.5000 -0.0639 35 1 1.8503 -3.4377 -0.5937 36 1 3.0358 -2.7522 1.5414 37 1 1.5391 -1.8143 2.0718 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350312942.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:19 Heat of formation + Delta-G solvation = -44.121404 kcal Electronic energy + Delta-G solvation = -21320.750052 eV Core-core repulsion = 18030.811279 eV Total energy + Delta-G solvation = -3289.938773 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.18261 -41.23846 -39.08125 -37.26057 -35.30728 -34.42421 -33.53805 -31.61550 -29.27064 -28.49393 -25.51065 -24.34076 -23.24186 -22.53058 -22.19467 -21.17334 -19.71995 -18.91970 -18.49203 -18.09845 -17.23234 -16.88417 -16.65470 -16.39899 -16.11277 -15.11580 -14.82160 -14.53696 -14.23235 -13.97464 -13.79004 -13.51705 -13.50002 -13.23522 -13.06290 -13.01168 -12.83907 -12.55930 -12.23391 -12.18545 -12.00388 -11.74381 -11.41642 -11.37297 -10.85016 -10.76415 -10.52027 -9.94999 -9.12157 -8.24425 -6.54884 0.15976 1.10160 1.37844 1.40533 1.51397 1.94157 1.99921 2.13996 2.39904 2.45271 2.99264 3.01379 3.55990 3.83046 3.97809 4.10141 4.19757 4.26857 4.38950 4.39548 4.56597 4.62084 4.68578 4.73039 4.82169 4.96138 5.07306 5.15082 5.19359 5.25661 5.32759 5.36383 5.41278 5.45532 5.60285 5.67596 5.86036 5.98535 6.46653 6.59486 6.98405 7.18408 8.71236 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.019258 B = 0.005353 C = 0.004775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.616769 B = 5229.568052 C = 5861.884443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.025 3.975 3 C -0.228 4.228 4 C 0.471 3.529 5 O -0.541 6.541 6 O -0.362 6.362 7 C 0.303 3.697 8 H 0.039 0.961 9 C -0.558 4.558 10 H 0.072 0.928 11 C 0.024 3.976 12 N -0.891 5.891 13 Si 0.983 3.017 14 H -0.273 1.273 15 H -0.273 1.273 16 H -0.262 1.262 17 C -0.007 4.007 18 C -0.191 4.191 19 C -0.228 4.228 20 C -0.072 4.072 21 O -0.197 6.197 22 C -0.161 4.161 23 C -0.150 4.150 24 C -0.162 4.162 25 H 0.103 0.897 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.159 0.841 29 H 0.271 0.729 30 H 0.125 0.875 31 H 0.166 0.834 32 H 0.240 0.760 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.365 -5.155 2.810 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.024 3.976 3 C -0.247 4.247 4 C 0.320 3.680 5 O -0.434 6.434 6 O -0.278 6.278 7 C 0.249 3.751 8 H 0.057 0.943 9 C -0.595 4.595 10 H 0.090 0.910 11 C -0.179 4.179 12 N -0.525 5.525 13 Si 0.805 3.195 14 H -0.198 1.198 15 H -0.197 1.197 16 H -0.186 1.186 17 C -0.057 4.057 18 C -0.211 4.211 19 C -0.247 4.247 20 C -0.138 4.138 21 O -0.095 6.095 22 C -0.179 4.179 23 C -0.186 4.186 24 C -0.199 4.199 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.176 0.824 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.184 0.816 32 H 0.257 0.743 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.121 0.879 36 H 0.103 0.897 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.206 -5.315 2.849 15.433 hybrid contribution 1.724 0.485 -0.288 1.813 sum -12.483 -4.831 2.561 13.628 Atomic orbital electron populations 1.21147 0.86608 1.05133 1.04967 1.22343 0.97769 0.91559 0.85913 1.21858 0.87777 1.01259 1.13774 1.22459 0.91133 0.81291 0.73118 1.90732 1.72404 1.33558 1.46724 1.86619 1.24083 1.35728 1.81403 1.18701 0.72990 0.98245 0.85198 0.94307 1.21164 0.92378 1.17960 1.27970 0.90993 1.25849 0.96871 0.98791 0.96410 1.70169 1.06266 1.37563 1.38528 0.85190 0.77665 0.77975 0.78653 1.19829 1.19743 1.18566 1.23381 0.96650 0.93291 0.92408 1.21343 1.00451 1.05449 0.93838 1.22060 1.02279 1.02877 0.97491 1.24691 0.97285 1.04075 0.87796 1.83963 1.51168 1.54360 1.19959 1.21465 1.00733 0.90265 1.05476 1.23249 1.00173 0.95981 0.99235 1.22873 1.03042 1.02054 0.91958 0.87838 0.88637 0.89265 0.82393 0.91975 0.85662 0.81625 0.74345 0.88866 0.85381 0.87887 0.89741 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.78 9.49 71.23 0.68 -1.10 16 2 C 0.02 0.65 5.81 -17.60 -0.10 0.55 16 3 C -0.23 -7.55 9.75 23.40 0.23 -7.32 16 4 C 0.47 21.71 7.78 70.10 0.55 22.26 16 5 O -0.54 -27.12 12.57 19.73 0.25 -26.88 16 6 O -0.36 -19.06 9.85 -54.39 -0.54 -19.60 16 7 C 0.30 17.59 2.42 29.10 0.07 17.66 16 8 H 0.04 2.49 7.16 -2.39 -0.02 2.47 16 9 C -0.56 -32.96 8.89 25.60 0.23 -32.73 16 10 H 0.07 4.18 7.81 -2.91 -0.02 4.15 16 11 C 0.02 1.35 5.30 84.65 0.45 1.79 16 12 N -0.89 -51.49 10.48 21.45 0.22 -51.26 16 13 Si 0.98 43.96 29.54 68.60 2.03 45.99 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 17 C -0.01 -0.38 5.68 24.83 0.14 -0.24 16 18 C -0.19 -10.13 9.04 22.19 0.20 -9.93 16 19 C -0.23 -9.80 10.91 22.19 0.24 -9.56 16 20 C -0.07 -2.92 12.09 66.97 0.81 -2.11 16 21 O -0.20 -10.05 10.63 0.94 0.01 -10.04 16 22 C -0.16 -4.66 4.35 -11.54 -0.05 -4.71 16 23 C -0.15 -2.88 9.79 30.59 0.30 -2.58 16 24 C -0.16 -4.04 10.23 30.59 0.31 -3.73 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.10 1.03 6.37 -2.39 -0.02 1.02 16 27 H 0.09 1.11 8.07 -2.38 -0.02 1.10 16 28 H 0.16 4.37 8.06 -2.91 -0.02 4.34 16 29 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 30 H 0.13 7.01 7.49 -2.91 -0.02 6.98 16 31 H 0.17 5.75 8.06 -2.91 -0.02 5.73 16 32 H 0.24 6.60 8.06 -2.91 -0.02 6.57 16 33 H 0.09 3.50 6.24 -2.39 -0.01 3.49 16 34 H 0.13 1.64 6.31 -2.39 -0.02 1.62 16 35 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 37 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -74.49 320.41 7.10 -67.40 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.08 Total: 26.14 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 4.05 Total: -31.74 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.22 Total: -51.26 kcal Atomic # 8 Polarization: -56.24 SS G_CDS: -0.28 Total: -56.52 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -74.49 7.10 -67.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350312942.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.274 kcal (2) G-P(sol) polarization free energy of solvation -74.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds