Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48505 * 109.46863 * 269.99782 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47269 * 149.99703 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99881 * 162.32321 * 7 2 1 9 9 C 1.41436 * 119.99886 * 342.31543 * 7 2 1 10 10 C 1.40791 * 120.17414 * 155.17841 * 9 7 2 11 11 C 1.37717 * 120.05709 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41183 * 359.95934 * 11 10 9 13 13 C 1.39925 * 120.35583 * 0.04240 * 12 11 10 14 14 C 1.47761 * 120.03216 * 180.02562 * 13 12 11 15 15 O 1.21463 * 120.00134 * 179.97438 * 14 13 12 16 16 O 1.34710 * 120.00089 * 359.97275 * 14 13 12 17 17 C 1.45198 * 117.00083 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46829 * 179.97438 * 17 16 14 19 19 O 1.42905 * 109.46906 * 65.00479 * 18 17 16 20 20 C 1.42901 * 113.99679 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49434 * 218.61801 * 20 19 18 22 22 C 1.53003 * 60.00014 * 252.51411 * 21 20 19 23 23 C 1.39094 * 119.93567 * 359.97438 * 13 12 11 24 24 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.97383 * 0.03003 * 10 9 7 26 26 H 1.07994 * 119.79746 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.82138 * 180.02562 * 12 11 10 28 28 H 1.08996 * 109.47301 * 300.00072 * 17 16 14 29 29 H 1.09001 * 109.47058 * 60.00593 * 17 16 14 30 30 H 1.08998 * 109.47138 * 184.99958 * 18 17 16 31 31 H 1.08997 * 109.47702 * 305.00265 * 18 17 16 32 32 H 1.08992 * 115.55520 * 4.32681 * 20 19 18 33 33 H 1.08996 * 117.50305 * 0.02562 * 21 20 19 34 34 H 1.09005 * 117.49506 * 145.02374 * 21 20 19 35 35 H 1.08999 * 117.49868 * 252.51289 * 22 21 20 36 36 H 1.08994 * 117.51650 * 107.48646 * 22 21 20 37 37 H 1.08001 * 120.19933 * 180.27251 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0497 -1.2340 -0.2834 9 6 1.3510 -2.4076 0.3732 10 6 1.8219 -3.6492 -0.0947 11 6 1.1800 -4.8120 0.2692 12 6 0.0709 -4.7707 1.0956 13 6 -0.4118 -3.5462 1.5705 14 6 -1.5963 -3.5105 2.4531 15 8 -2.0146 -2.4473 2.8654 16 8 -2.2124 -4.6570 2.8004 17 6 -3.3702 -4.5461 3.6696 18 6 -3.9314 -5.9412 3.9518 19 8 -2.9733 -6.6991 4.6933 20 6 -3.4013 -8.0249 5.0112 21 6 -3.0301 -8.5755 6.3897 22 6 -2.3236 -9.1034 5.1394 23 6 0.2251 -2.3628 1.2119 24 1 -0.4850 0.8400 -0.0004 25 1 2.6874 -3.6899 -0.7395 26 1 1.5445 -5.7621 -0.0924 27 1 -0.4249 -5.6885 1.3753 28 1 -3.0764 -4.0757 4.6079 29 1 -4.1335 -3.9396 3.1824 30 1 -4.8510 -5.8527 4.5303 31 1 -4.1426 -6.4456 3.0089 32 1 -4.3629 -8.3217 4.5926 33 1 -2.4599 -7.9264 7.0541 34 1 -3.7479 -9.2346 6.8782 35 1 -2.5764 -10.1097 4.8055 36 1 -1.2883 -8.8018 4.9809 37 1 -0.1413 -1.4157 1.5796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350851245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -88.255865 kcal Electronic energy + Delta-G solvation = -20305.237585 eV Core-core repulsion = 17013.384998 eV Total energy + Delta-G solvation = -3291.852587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76310 -38.60471 -37.35811 -35.93351 -34.91426 -33.73571 -30.66450 -29.66805 -29.42987 -25.38252 -23.78070 -22.56400 -22.15781 -22.09646 -20.96818 -19.80716 -17.85634 -17.46629 -16.57978 -16.02119 -15.75002 -15.34814 -14.97880 -14.85056 -14.59525 -14.12395 -13.43441 -13.29497 -12.82350 -12.69729 -12.58609 -12.08858 -11.73544 -11.68825 -11.63277 -11.21996 -11.15251 -11.08614 -10.76613 -10.65135 -10.51269 -10.22020 -10.18452 -9.71452 -9.47393 -9.24990 -9.22520 -7.72773 -7.54057 -6.82076 -4.42675 2.00267 2.79046 3.07108 3.09783 3.15590 3.22731 3.30532 3.62364 3.66604 3.90964 4.59131 4.60593 4.76022 4.77742 5.03829 5.12700 5.15628 5.26563 5.45013 5.46471 5.55475 5.64201 5.76165 5.86403 5.97223 6.14953 6.43525 6.64510 6.94026 6.96316 7.00739 7.09204 7.17942 7.32432 7.70136 7.77008 7.91938 8.11416 8.45171 8.58183 8.77982 8.80131 10.13465 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.003596 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.491631 B = 7784.655931 C = 8412.316355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.201 4.201 11 C -0.104 4.104 12 C -0.191 4.191 13 C -0.115 4.115 14 C 0.512 3.488 15 O -0.520 6.520 16 O -0.348 6.348 17 C 0.066 3.934 18 C 0.067 3.933 19 O -0.347 6.347 20 C 0.016 3.984 21 C -0.192 4.192 22 C -0.183 4.183 23 C -0.089 4.089 24 H 0.284 0.716 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 -11.266 7.081 15.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.093 3.907 10 C -0.221 4.221 11 C -0.123 4.123 12 C -0.211 4.211 13 C -0.116 4.116 14 C 0.359 3.641 15 O -0.410 6.410 16 O -0.266 6.266 17 C -0.008 4.008 18 C -0.009 4.009 19 O -0.265 6.265 20 C -0.043 4.043 21 C -0.229 4.229 22 C -0.220 4.220 23 C -0.109 4.109 24 H 0.095 0.905 25 H 0.117 0.883 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.459 -10.708 7.261 14.934 hybrid contribution -0.092 0.729 -0.027 0.735 sum -7.551 -9.979 7.234 14.454 Atomic orbital electron populations 1.69782 1.07607 1.29774 1.34051 1.25963 0.94773 1.01576 0.92251 0.86276 0.80621 0.80444 0.79228 1.19429 1.19977 1.18357 1.19549 0.98181 0.90936 1.40292 0.89972 1.17534 0.91137 0.92604 0.89432 1.21191 1.03172 0.92753 1.04958 1.20512 0.96179 0.96909 0.98673 1.20587 1.00160 0.95387 1.04976 1.18834 0.95017 0.95900 1.01849 1.21886 0.83018 0.80860 0.78304 1.90755 1.65273 1.31344 1.53650 1.86653 1.41923 1.35926 1.62058 1.22927 0.87615 0.95738 0.94538 1.22639 0.91296 0.91163 0.95811 1.87963 1.41621 1.23214 1.73719 1.22646 0.97866 0.84012 0.99734 1.23393 1.04159 1.03605 0.91740 1.23334 0.99250 0.97974 1.01468 1.21636 0.96541 0.95963 0.96733 0.90452 0.88350 0.88541 0.87810 0.90686 0.89785 0.91113 0.91785 0.87290 0.88179 0.88396 0.88237 0.87869 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.76 10.97 55.55 0.61 -20.15 16 2 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 3 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.06 9.05 -37.73 -0.34 -12.40 16 8 H 0.08 2.03 7.91 -52.49 -0.41 1.62 16 9 C 0.10 2.53 5.57 -106.88 -0.60 1.93 16 10 C -0.20 -4.80 9.78 -38.81 -0.38 -5.18 16 11 C -0.10 -2.30 10.01 -39.72 -0.40 -2.69 16 12 C -0.19 -4.33 9.62 -38.90 -0.37 -4.71 16 13 C -0.11 -2.83 5.87 -105.06 -0.62 -3.45 16 14 C 0.51 11.84 7.90 34.62 0.27 12.11 16 15 O -0.52 -12.94 16.12 -19.24 -0.31 -13.25 16 16 O -0.35 -6.84 9.43 -43.30 -0.41 -7.24 16 17 C 0.07 1.00 5.85 37.16 0.22 1.22 16 18 C 0.07 0.79 6.20 37.16 0.23 1.02 16 19 O -0.35 -4.82 10.57 -38.80 -0.41 -5.23 16 20 C 0.02 0.16 6.44 -26.73 -0.17 -0.01 16 21 C -0.19 -1.75 10.48 -26.73 -0.28 -2.03 16 22 C -0.18 -1.78 10.48 -26.73 -0.28 -2.06 16 23 C -0.09 -2.40 8.23 -38.42 -0.32 -2.72 16 24 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 25 H 0.10 2.16 8.06 -52.48 -0.42 1.73 16 26 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.10 2.14 7.59 -52.49 -0.40 1.74 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.88 7.93 -51.93 -0.41 0.46 16 33 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.13 3.85 5.77 -52.49 -0.30 3.55 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -30.07 327.35 -8.63 -38.69 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.89 Total: 5.79 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -3.12 Total: -17.20 kcal Atomic # 7 Polarization: -20.76 SS G_CDS: 0.61 Total: -20.15 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.13 Total: -25.72 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.07 -8.63 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350851245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.564 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds