Wall clock time and date at job start Mon Mar 30 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86801 * 119.99795 * 2 1 4 4 H 1.48505 * 109.46863 * 269.99782 * 3 2 1 5 5 H 1.48502 * 109.47289 * 29.99575 * 3 2 1 6 6 H 1.48504 * 109.47269 * 149.99703 * 3 2 1 7 7 C 1.39938 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99881 * 162.32321 * 7 2 1 9 9 C 1.41436 * 119.99886 * 342.31543 * 7 2 1 10 10 C 1.40791 * 120.17414 * 155.17841 * 9 7 2 11 11 C 1.37717 * 120.05709 * 180.02562 * 10 9 7 12 12 C 1.38368 * 120.41183 * 359.95934 * 11 10 9 13 13 C 1.39925 * 120.35583 * 0.04240 * 12 11 10 14 14 C 1.47761 * 120.03216 * 180.02562 * 13 12 11 15 15 O 1.21463 * 120.00134 * 179.97438 * 14 13 12 16 16 O 1.34710 * 120.00089 * 359.97275 * 14 13 12 17 17 C 1.45198 * 117.00083 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46829 * 179.97438 * 17 16 14 19 19 O 1.42905 * 109.46906 * 65.00479 * 18 17 16 20 20 C 1.42901 * 113.99679 * 179.97438 * 19 18 17 21 21 C 1.53005 * 117.49434 * 218.61801 * 20 19 18 22 22 C 1.53003 * 60.00014 * 252.51411 * 21 20 19 23 23 C 1.39094 * 119.93567 * 359.97438 * 13 12 11 24 24 H 0.96997 * 120.00049 * 0.02562 * 1 2 3 25 25 H 1.08007 * 119.97383 * 0.03003 * 10 9 7 26 26 H 1.07994 * 119.79746 * 179.97438 * 11 10 9 27 27 H 1.08001 * 119.82138 * 180.02562 * 12 11 10 28 28 H 1.08996 * 109.47301 * 300.00072 * 17 16 14 29 29 H 1.09001 * 109.47058 * 60.00593 * 17 16 14 30 30 H 1.08998 * 109.47138 * 184.99958 * 18 17 16 31 31 H 1.08997 * 109.47702 * 305.00265 * 18 17 16 32 32 H 1.08992 * 115.55520 * 4.32681 * 20 19 18 33 33 H 1.08996 * 117.50305 * 0.02562 * 21 20 19 34 34 H 1.09005 * 117.49506 * 145.02374 * 21 20 19 35 35 H 1.08999 * 117.49868 * 252.51289 * 22 21 20 36 36 H 1.08994 * 117.51650 * 107.48646 * 22 21 20 37 37 H 1.08001 * 120.19933 * 180.27251 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4397 2.6528 0.6999 6 1 3.5398 1.4403 0.7001 7 6 2.0080 -1.2119 0.0005 8 1 3.0497 -1.2340 -0.2834 9 6 1.3510 -2.4076 0.3732 10 6 1.8219 -3.6492 -0.0947 11 6 1.1800 -4.8120 0.2692 12 6 0.0709 -4.7707 1.0956 13 6 -0.4118 -3.5462 1.5705 14 6 -1.5963 -3.5105 2.4531 15 8 -2.0146 -2.4473 2.8654 16 8 -2.2124 -4.6570 2.8004 17 6 -3.3702 -4.5461 3.6696 18 6 -3.9314 -5.9412 3.9518 19 8 -2.9733 -6.6991 4.6933 20 6 -3.4013 -8.0249 5.0112 21 6 -3.0301 -8.5755 6.3897 22 6 -2.3236 -9.1034 5.1394 23 6 0.2251 -2.3628 1.2119 24 1 -0.4850 0.8400 -0.0004 25 1 2.6874 -3.6899 -0.7395 26 1 1.5445 -5.7621 -0.0924 27 1 -0.4249 -5.6885 1.3753 28 1 -3.0764 -4.0757 4.6079 29 1 -4.1335 -3.9396 3.1824 30 1 -4.8510 -5.8527 4.5303 31 1 -4.1426 -6.4456 3.0089 32 1 -4.3629 -8.3217 4.5926 33 1 -2.4599 -7.9264 7.0541 34 1 -3.7479 -9.2346 6.8782 35 1 -2.5764 -10.1097 4.8055 36 1 -1.2883 -8.8018 4.9809 37 1 -0.1413 -1.4157 1.5796 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350851245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:29 Heat of formation + Delta-G solvation = -104.216198 kcal Electronic energy + Delta-G solvation = -20305.929677 eV Core-core repulsion = 17013.384998 eV Total energy + Delta-G solvation = -3292.544679 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.46074 -39.56834 -39.12601 -37.50160 -35.90335 -35.60860 -32.38683 -31.40085 -30.89464 -27.29686 -25.37241 -23.47912 -23.27012 -22.88397 -22.84476 -21.56809 -19.67724 -18.48422 -18.16528 -17.78312 -17.20704 -16.75544 -16.50206 -16.06968 -16.00065 -15.25845 -15.12758 -14.89884 -14.40418 -14.25461 -13.97940 -13.53262 -13.39027 -12.99470 -12.80101 -12.61012 -12.53697 -12.40074 -12.24299 -12.21475 -12.04189 -11.72047 -11.56162 -11.33282 -11.28170 -11.08288 -10.08070 -9.62691 -9.45405 -8.69237 -6.40314 0.12001 0.95951 1.37610 1.45144 1.53631 1.69037 1.79049 2.19060 2.45827 2.71785 2.93518 3.62067 3.74883 3.89512 3.91793 4.02679 4.07768 4.19127 4.38052 4.41091 4.45186 4.58644 4.62065 4.71919 4.77845 4.86052 5.03487 5.04319 5.12158 5.25666 5.26249 5.28056 5.43901 5.81045 5.88500 6.00074 6.21679 6.26251 6.52080 6.80065 6.85862 6.88252 8.28570 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029267 B = 0.003596 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.491631 B = 7784.655931 C = 8412.316355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.029 3.971 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.494 4.494 8 H 0.088 0.912 9 C 0.066 3.934 10 C -0.203 4.203 11 C -0.099 4.099 12 C -0.181 4.181 13 C -0.130 4.130 14 C 0.515 3.485 15 O -0.548 6.548 16 O -0.346 6.346 17 C 0.055 3.945 18 C 0.073 3.927 19 O -0.383 6.383 20 C 0.001 3.999 21 C -0.185 4.185 22 C -0.190 4.190 23 C -0.123 4.123 24 H 0.288 0.712 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.129 0.871 28 H 0.067 0.933 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.076 0.924 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.082 0.918 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.672 -13.170 7.097 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.805 3.195 4 H -0.181 1.181 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.523 4.523 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.223 4.223 11 C -0.116 4.116 12 C -0.201 4.201 13 C -0.131 4.131 14 C 0.363 3.637 15 O -0.440 6.440 16 O -0.263 6.263 17 C -0.018 4.018 18 C -0.003 4.003 19 O -0.303 6.303 20 C -0.056 4.056 21 C -0.222 4.222 22 C -0.227 4.227 23 C -0.143 4.143 24 H 0.099 0.901 25 H 0.135 0.865 26 H 0.159 0.841 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.155 0.845 33 H 0.104 0.896 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.101 0.899 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.862 -12.656 7.279 16.583 hybrid contribution -0.036 1.115 0.024 1.116 sum -7.898 -11.541 7.303 15.777 Atomic orbital electron populations 1.69873 1.09289 1.30797 1.35220 1.26881 0.95431 1.05036 0.91202 0.85168 0.79066 0.75590 0.79721 1.18121 1.19722 1.17833 1.19856 0.98667 0.91930 1.41841 0.89372 1.17903 0.91600 0.94122 0.89983 1.21512 1.03600 0.92512 1.04656 1.20957 0.95182 0.98107 0.97398 1.20934 0.99990 0.95313 1.03827 1.19104 0.95634 0.96154 1.02204 1.21695 0.82825 0.81336 0.77873 1.90728 1.66057 1.32552 1.54679 1.86615 1.43258 1.33899 1.62487 1.23397 0.86234 0.98786 0.93427 1.22724 0.91700 0.88867 0.96966 1.87903 1.43137 1.25033 1.74190 1.23009 0.99142 0.82648 1.00815 1.23457 1.04200 1.03371 0.91210 1.23407 0.98139 0.98971 1.02166 1.21445 0.98266 0.95732 0.98827 0.90133 0.86530 0.84137 0.85355 0.91452 0.88526 0.87318 0.90613 0.84496 0.89595 0.85779 0.85964 0.89936 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.44 10.97 21.83 0.24 -45.21 16 2 C 0.03 1.52 5.14 85.25 0.44 1.96 16 3 Si 0.98 39.00 29.59 68.60 2.03 41.03 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.49 -26.57 9.05 23.47 0.21 -26.36 16 8 H 0.09 4.44 7.91 -2.91 -0.02 4.41 16 9 C 0.07 3.60 5.57 -21.32 -0.12 3.48 16 10 C -0.20 -9.55 9.78 22.77 0.22 -9.32 16 11 C -0.10 -4.10 10.01 22.18 0.22 -3.88 16 12 C -0.18 -7.94 9.62 22.71 0.22 -7.72 16 13 C -0.13 -6.51 5.87 -20.15 -0.12 -6.63 16 14 C 0.51 24.27 7.90 70.34 0.56 24.83 16 15 O -0.55 -28.29 16.12 19.96 0.32 -27.97 16 16 O -0.35 -13.42 9.43 -53.54 -0.50 -13.93 16 17 C 0.06 1.62 5.85 71.98 0.42 2.04 16 18 C 0.07 1.55 6.20 71.98 0.45 2.00 16 19 O -0.38 -10.03 10.57 -145.57 -1.54 -11.57 16 20 C 0.00 0.02 6.44 30.60 0.20 0.22 16 21 C -0.19 -2.99 10.48 30.60 0.32 -2.67 16 22 C -0.19 -3.34 10.48 30.60 0.32 -3.02 16 23 C -0.12 -6.89 8.23 23.02 0.19 -6.70 16 24 H 0.29 14.53 8.30 -92.71 -0.77 13.76 16 25 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 26 H 0.14 4.60 8.06 -2.91 -0.02 4.58 16 27 H 0.13 4.96 7.59 -2.91 -0.02 4.93 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.14 1.69 7.93 -2.39 -0.02 1.67 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.11 6.43 5.77 -2.91 -0.02 6.41 16 Total: -1.00 -67.97 327.35 5.14 -62.82 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 1.07 Total: 26.59 kcal Atomic # 6 Polarization: -35.30 SS G_CDS: 3.53 Total: -31.77 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.24 Total: -45.21 kcal Atomic # 8 Polarization: -51.74 SS G_CDS: -1.72 Total: -53.46 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -67.97 5.14 -62.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350851245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.394 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds