Wall clock time and date at job start Mon Mar 30 2020 01:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47109 * 2 1 4 4 C 1.50706 * 109.46837 * 239.99771 * 2 1 3 5 5 H 1.07996 * 119.99347 * 267.99774 * 4 2 1 6 6 C 1.37871 * 119.99639 * 88.00654 * 4 2 1 7 7 N 1.31521 * 119.99787 * 169.10211 * 6 4 2 8 8 Si 1.86797 * 120.00419 * 349.09828 * 6 4 2 9 9 H 1.48500 * 109.47317 * 89.81851 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.81816 * 8 6 4 11 11 H 1.48502 * 109.47290 * 329.81751 * 8 6 4 12 12 N 1.46503 * 109.46803 * 120.00013 * 2 1 3 13 13 C 1.46492 * 120.00368 * 59.99949 * 12 2 1 14 14 C 1.34780 * 119.99616 * 239.99536 * 12 2 1 15 15 O 1.21562 * 119.99790 * 7.40797 * 14 12 2 16 16 C 1.47758 * 119.99784 * 187.40104 * 14 12 2 17 17 C 1.39699 * 120.02007 * 323.55797 * 16 14 12 18 18 C 1.37631 * 120.03701 * 179.78819 * 17 16 14 19 19 C 1.39746 * 120.06883 * 0.46410 * 18 17 16 20 20 C 1.43203 * 119.98440 * 179.76654 * 19 18 17 21 21 N 9.02867 * 117.36653 * 115.34425 * 2 1 3 22 22 C 1.39536 * 120.03415 * 359.78930 * 19 18 17 23 23 C 1.38109 * 119.96084 * 359.97438 * 22 19 18 24 24 F 1.35103 * 120.02903 * 179.97438 * 23 22 19 25 25 H 1.09007 * 109.46958 * 54.45255 * 1 2 3 26 26 H 1.08996 * 109.47384 * 174.45424 * 1 2 3 27 27 H 1.08997 * 109.47297 * 294.45504 * 1 2 3 28 28 H 0.96990 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47230 * 265.47095 * 13 12 2 30 30 H 1.08993 * 109.47458 * 145.46238 * 13 12 2 31 31 H 1.09009 * 109.47187 * 25.46347 * 13 12 2 32 32 H 1.08005 * 119.98013 * 359.97438 * 17 16 14 33 33 H 1.08009 * 119.96292 * 180.23091 * 18 17 16 34 34 H 1.08003 * 120.02304 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2431 -1.7691 -1.1945 6 6 2.2229 -0.0090 -2.4020 7 7 2.8579 -0.5694 -3.4082 8 14 1.5792 1.7375 -2.5602 9 1 2.6216 2.6924 -2.1056 10 1 1.2402 2.0134 -3.9794 11 1 0.3639 1.8950 -1.7214 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 2.9766 1.1601 1.9637 16 6 3.4197 -0.7709 3.2014 17 6 2.7314 -1.8150 3.8241 18 6 3.3163 -2.5030 4.8627 19 6 4.5956 -2.1522 5.3024 20 6 5.2005 -2.8660 6.3865 21 7 5.6804 -3.4322 7.2465 22 6 5.2837 -1.1064 4.6860 23 6 4.6999 -0.4183 3.6405 24 9 5.3646 0.5948 3.0430 25 1 -0.3633 0.5975 -0.8362 26 1 -0.3634 -1.0228 -0.0993 27 1 -0.3634 0.4254 0.9354 28 1 2.9916 -0.0761 -4.2325 29 1 0.7827 -2.1445 2.0669 30 1 2.4961 -2.6020 1.9151 31 1 1.4508 -2.5764 0.4746 32 1 1.7408 -2.0843 3.4884 33 1 2.7846 -3.3124 5.3409 34 1 6.2725 -0.8357 5.0258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353566273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:16 Heat of formation + Delta-G solvation = -3.790466 kcal Electronic energy + Delta-G solvation = -20782.338065 eV Core-core repulsion = 17402.980619 eV Total energy + Delta-G solvation = -3379.357446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.89330 -40.20724 -38.62761 -36.61050 -35.64933 -33.12989 -31.91440 -30.96317 -30.04922 -26.70584 -25.37364 -25.02476 -23.10501 -21.45873 -19.57723 -19.00633 -17.47194 -16.85949 -16.50938 -16.21452 -16.00762 -15.47933 -14.84833 -14.62735 -14.25588 -14.16981 -14.02226 -13.68355 -13.26658 -12.85646 -12.76983 -12.54882 -12.41029 -12.33840 -12.25721 -11.88238 -11.76988 -11.31163 -11.14841 -10.71499 -10.30709 -9.78996 -9.49138 -9.35690 -9.22566 -9.00864 -8.66808 -7.84084 -6.23634 -4.24273 0.12902 0.84458 2.29221 2.36370 3.13255 3.25667 3.32175 3.34841 3.37310 3.45951 3.70053 4.08102 4.32815 4.41220 4.58297 4.62618 4.86616 5.14942 5.19391 5.50754 5.56347 5.61778 5.71594 5.79545 5.83319 6.15869 6.24192 6.31809 6.38665 6.49570 6.85003 6.97621 7.10014 7.34401 7.53599 7.94893 8.36739 8.65445 8.78754 9.39060 10.88151 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.004730 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.442927 B = 5918.164371 C = 6201.735752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.229 3.771 3 H 0.063 0.937 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.863 3.137 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.252 1.252 12 N -0.574 5.574 13 C 0.069 3.931 14 C 0.543 3.457 15 O -0.534 6.534 16 C -0.123 4.123 17 C -0.072 4.072 18 C -0.090 4.090 19 C 0.012 3.988 20 C 0.258 3.742 21 N -0.409 5.409 22 C -0.117 4.117 23 C 0.153 3.847 24 F -0.111 7.111 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.027 0.973 28 H 0.267 0.733 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 -4.105 14.588 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.129 3.871 3 H 0.080 0.920 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.122 4.122 7 N -0.522 5.522 8 Si 0.690 3.310 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.176 1.176 12 N -0.304 5.304 13 C -0.074 4.074 14 C 0.329 3.671 15 O -0.412 6.412 16 C -0.128 4.128 17 C -0.091 4.091 18 C -0.111 4.111 19 C 0.008 3.992 20 C -0.058 4.058 21 N -0.084 5.084 22 C -0.138 4.138 23 C 0.133 3.867 24 F -0.089 7.089 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.179 0.821 33 H 0.163 0.837 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.501 -4.286 15.583 16.170 hybrid contribution -0.241 1.144 -0.759 1.394 sum -0.742 -3.142 14.824 15.172 Atomic orbital electron populations 1.22460 0.98286 1.01219 0.99738 1.19233 0.90728 0.94803 0.82373 0.91950 1.21067 1.45703 0.97441 0.92961 0.90298 1.24882 0.93521 0.97987 0.95851 1.69923 1.38711 1.38482 1.05117 0.87140 0.80918 0.85360 0.77585 1.19804 1.21179 1.17613 1.48082 1.48072 1.11755 1.22529 1.22134 0.98887 0.83163 1.03240 1.17985 0.80085 0.87018 0.81973 1.90792 1.61826 1.14124 1.74472 1.20587 0.94501 0.98541 0.99210 1.21740 1.01219 0.92395 0.93721 1.21149 0.93167 1.00279 0.96492 1.15725 0.94564 0.95834 0.93084 1.25504 0.93641 0.93583 0.93069 1.81273 1.07958 1.08790 1.10394 1.21022 1.01407 0.95672 0.95722 1.17359 0.89903 0.86996 0.92471 1.91631 1.79281 1.56177 1.81848 0.91775 0.93029 0.95379 0.92321 0.93086 0.91520 0.89396 0.82139 0.83744 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.85 37.16 0.33 -2.79 16 2 C 0.23 5.20 2.20 -69.08 -0.15 5.05 16 3 H 0.06 1.58 5.13 -51.93 -0.27 1.32 16 4 C -0.53 -13.96 8.67 -34.44 -0.30 -14.26 16 5 H 0.08 2.17 6.93 -52.49 -0.36 1.81 16 6 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 7 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 8 Si 0.86 20.74 26.42 -169.99 -4.49 16.25 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.25 -5.60 5.12 56.52 0.29 -5.31 16 12 N -0.57 -10.99 2.75 -176.41 -0.49 -11.47 16 13 C 0.07 0.96 7.92 59.84 0.47 1.44 16 14 C 0.54 10.49 7.27 -12.37 -0.09 10.40 16 15 O -0.53 -12.46 15.46 5.31 0.08 -12.38 16 16 C -0.12 -1.76 5.39 -104.85 -0.56 -2.33 16 17 C -0.07 -0.71 7.48 -39.26 -0.29 -1.00 16 18 C -0.09 -0.70 9.73 -39.24 -0.38 -1.08 16 19 C 0.01 0.10 5.73 -106.92 -0.61 -0.51 16 20 C 0.26 2.54 15.32 -22.47 -0.34 2.19 16 21 N -0.41 -4.90 18.54 41.83 0.78 -4.13 16 22 C -0.12 -1.17 9.71 -39.14 -0.38 -1.55 16 23 C 0.15 2.10 7.23 -39.02 -0.28 1.82 16 24 F -0.11 -1.86 16.12 2.25 0.04 -1.83 16 25 H 0.06 1.31 5.36 -51.93 -0.28 1.03 16 26 H 0.05 0.93 7.85 -51.93 -0.41 0.52 16 27 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.05 0.54 7.01 -51.93 -0.36 0.18 16 30 H 0.07 0.78 5.48 -51.93 -0.28 0.49 16 31 H 0.09 1.37 6.66 -51.92 -0.35 1.02 16 32 H 0.16 1.29 4.93 -52.48 -0.26 1.03 16 33 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -32.57 295.47 -4.64 -37.21 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: -3.09 Total: -2.52 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: -2.69 Total: -0.46 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 1.06 Total: -40.73 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.08 Total: -12.38 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.49 Total: 16.25 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.57 -4.64 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353566273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.417 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds