Wall clock time and date at job start Mon Mar 30 2020 01:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47109 * 2 1 4 4 C 1.50706 * 109.46837 * 239.99771 * 2 1 3 5 5 H 1.07996 * 119.99347 * 267.99774 * 4 2 1 6 6 C 1.37871 * 119.99639 * 88.00654 * 4 2 1 7 7 N 1.31521 * 119.99787 * 169.10211 * 6 4 2 8 8 Si 1.86797 * 120.00419 * 349.09828 * 6 4 2 9 9 H 1.48500 * 109.47317 * 89.81851 * 8 6 4 10 10 H 1.48500 * 109.47187 * 209.81816 * 8 6 4 11 11 H 1.48502 * 109.47290 * 329.81751 * 8 6 4 12 12 N 1.46503 * 109.46803 * 120.00013 * 2 1 3 13 13 C 1.46492 * 120.00368 * 59.99949 * 12 2 1 14 14 C 1.34780 * 119.99616 * 239.99536 * 12 2 1 15 15 O 1.21562 * 119.99790 * 7.40797 * 14 12 2 16 16 C 1.47758 * 119.99784 * 187.40104 * 14 12 2 17 17 C 1.39699 * 120.02007 * 323.55797 * 16 14 12 18 18 C 1.37631 * 120.03701 * 179.78819 * 17 16 14 19 19 C 1.39746 * 120.06883 * 0.46410 * 18 17 16 20 20 C 1.43203 * 119.98440 * 179.76654 * 19 18 17 21 21 N 9.02867 * 117.36653 * 115.34425 * 2 1 3 22 22 C 1.39536 * 120.03415 * 359.78930 * 19 18 17 23 23 C 1.38109 * 119.96084 * 359.97438 * 22 19 18 24 24 F 1.35103 * 120.02903 * 179.97438 * 23 22 19 25 25 H 1.09007 * 109.46958 * 54.45255 * 1 2 3 26 26 H 1.08996 * 109.47384 * 174.45424 * 1 2 3 27 27 H 1.08997 * 109.47297 * 294.45504 * 1 2 3 28 28 H 0.96990 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.47230 * 265.47095 * 13 12 2 30 30 H 1.08993 * 109.47458 * 145.46238 * 13 12 2 31 31 H 1.09009 * 109.47187 * 25.46347 * 13 12 2 32 32 H 1.08005 * 119.98013 * 359.97438 * 17 16 14 33 33 H 1.08009 * 119.96292 * 180.23091 * 18 17 16 34 34 H 1.08003 * 120.02304 * 180.02562 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2431 -1.7691 -1.1945 6 6 2.2229 -0.0090 -2.4020 7 7 2.8579 -0.5694 -3.4082 8 14 1.5792 1.7375 -2.5602 9 1 2.6216 2.6924 -2.1056 10 1 1.2402 2.0134 -3.9794 11 1 0.3639 1.8950 -1.7214 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 2.9766 1.1601 1.9637 16 6 3.4197 -0.7709 3.2014 17 6 2.7314 -1.8150 3.8241 18 6 3.3163 -2.5030 4.8627 19 6 4.5956 -2.1522 5.3024 20 6 5.2005 -2.8660 6.3865 21 7 5.6804 -3.4322 7.2465 22 6 5.2837 -1.1064 4.6860 23 6 4.6999 -0.4183 3.6405 24 9 5.3646 0.5948 3.0430 25 1 -0.3633 0.5975 -0.8362 26 1 -0.3634 -1.0228 -0.0993 27 1 -0.3634 0.4254 0.9354 28 1 2.9916 -0.0761 -4.2325 29 1 0.7827 -2.1445 2.0669 30 1 2.4961 -2.6020 1.9151 31 1 1.4508 -2.5764 0.4746 32 1 1.7408 -2.0843 3.4884 33 1 2.7846 -3.3124 5.3409 34 1 6.2725 -0.8357 5.0258 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353566273.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:15 Heat of formation + Delta-G solvation = -25.321086 kcal Electronic energy + Delta-G solvation = -20783.271703 eV Core-core repulsion = 17402.980619 eV Total energy + Delta-G solvation = -3380.291084 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.01242 -41.38907 -39.76616 -37.50921 -37.25425 -34.85408 -33.33033 -31.82476 -31.49338 -27.93653 -27.20416 -26.19167 -24.03079 -22.89246 -20.55168 -20.41867 -19.14142 -18.16894 -17.82584 -17.48229 -17.11940 -16.72954 -16.35390 -15.94192 -15.40708 -15.22613 -15.02958 -14.74679 -14.57626 -14.44302 -14.09849 -13.86477 -13.76412 -13.55424 -13.33285 -13.22423 -13.07186 -12.84469 -12.52904 -12.25150 -12.08891 -11.57269 -11.28890 -10.89029 -10.74112 -10.18866 -9.93121 -9.37326 -8.35780 -6.37853 -0.76565 0.03185 1.30921 1.37486 1.39778 1.43100 1.49885 1.90195 2.23641 2.32528 2.54115 2.67281 3.03845 3.16769 3.46248 3.65187 3.88546 4.02499 4.33302 4.47726 4.49138 4.65700 4.71264 4.77903 4.83801 4.92454 4.97588 5.04071 5.06022 5.20030 5.38012 5.53537 5.58809 5.76793 6.15174 6.32203 6.65341 6.66887 7.17005 7.31151 8.79118 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029268 B = 0.004730 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.442927 B = 5918.164371 C = 6201.735752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.229 3.771 3 H 0.031 0.969 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.027 3.973 7 N -0.934 5.934 8 Si 0.913 3.087 9 H -0.291 1.291 10 H -0.280 1.280 11 H -0.222 1.222 12 N -0.583 5.583 13 C 0.061 3.939 14 C 0.535 3.465 15 O -0.590 6.590 16 C -0.144 4.144 17 C -0.059 4.059 18 C -0.059 4.059 19 C 0.023 3.977 20 C 0.283 3.717 21 N -0.441 5.441 22 C -0.102 4.102 23 C 0.121 3.879 24 F -0.141 7.141 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.267 0.733 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.186 0.814 33 H 0.189 0.811 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -5.774 17.297 18.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.126 3.874 3 H 0.049 0.951 4 C -0.563 4.563 5 H 0.074 0.926 6 C -0.173 4.173 7 N -0.573 5.573 8 Si 0.738 3.262 9 H -0.217 1.217 10 H -0.206 1.206 11 H -0.145 1.145 12 N -0.312 5.312 13 C -0.080 4.080 14 C 0.323 3.677 15 O -0.472 6.472 16 C -0.149 4.149 17 C -0.077 4.077 18 C -0.080 4.080 19 C 0.019 3.981 20 C -0.032 4.032 21 N -0.117 5.117 22 C -0.123 4.123 23 C 0.101 3.899 24 F -0.119 7.119 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.203 0.797 33 H 0.207 0.793 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.188 -6.001 18.322 19.403 hybrid contribution 0.330 1.535 -1.474 2.153 sum -1.859 -4.466 16.848 17.529 Atomic orbital electron populations 1.22285 0.95392 1.02473 1.00544 1.18987 0.92829 0.93054 0.82530 0.95080 1.21349 1.44191 0.96587 0.94215 0.92562 1.25622 0.94160 1.01587 0.95909 1.70035 1.41151 1.40177 1.05898 0.86359 0.81030 0.80728 0.78104 1.21734 1.20580 1.14535 1.48048 1.48138 1.13666 1.21311 1.22500 1.01829 0.80148 1.03540 1.18725 0.79263 0.86742 0.82940 1.90746 1.63438 1.16738 1.76249 1.20334 0.95195 1.00463 0.98921 1.21948 1.01727 0.90610 0.93450 1.21567 0.92099 0.99748 0.94536 1.15741 0.94936 0.95008 0.92381 1.25350 0.92736 0.92703 0.92424 1.81329 1.08896 1.09963 1.11469 1.21095 1.02009 0.95049 0.94132 1.17698 0.90391 0.87651 0.94147 1.91553 1.79916 1.57752 1.82698 0.92645 0.91204 0.93146 0.92402 0.88471 0.88972 0.91272 0.79713 0.79331 0.81507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 8.85 71.98 0.64 -4.90 16 2 C 0.23 10.34 2.20 44.25 0.10 10.44 16 3 H 0.03 1.61 5.13 -2.39 -0.01 1.60 16 4 C -0.53 -28.00 8.67 25.60 0.22 -27.78 16 5 H 0.06 3.18 6.93 -2.91 -0.02 3.16 16 6 C 0.03 1.52 5.47 84.65 0.46 1.99 16 7 N -0.93 -56.47 13.96 21.45 0.30 -56.17 16 8 Si 0.91 43.68 26.42 68.60 1.81 45.49 16 9 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.22 -9.48 5.12 99.48 0.51 -8.97 16 12 N -0.58 -21.75 2.75 -830.29 -2.29 -24.04 16 13 C 0.06 1.53 7.92 127.77 1.01 2.54 16 14 C 0.53 20.63 7.27 86.76 0.63 21.27 16 15 O -0.59 -28.58 15.46 -3.91 -0.06 -28.64 16 16 C -0.14 -3.90 5.39 -20.01 -0.11 -4.01 16 17 C -0.06 -0.90 7.48 22.48 0.17 -0.73 16 18 C -0.06 -0.59 9.73 22.49 0.22 -0.37 16 19 C 0.02 0.31 5.73 -21.35 -0.12 0.19 16 20 C 0.28 4.48 15.32 88.33 1.35 5.84 16 21 N -0.44 -9.24 18.54 19.00 0.35 -8.88 16 22 C -0.10 -1.81 9.71 22.55 0.22 -1.59 16 23 C 0.12 3.26 7.23 22.63 0.16 3.42 16 24 F -0.14 -4.93 16.12 44.97 0.72 -4.21 16 25 H 0.05 2.14 5.36 -2.38 -0.01 2.13 16 26 H 0.07 2.32 7.85 -2.39 -0.02 2.30 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 28 H 0.27 15.26 8.31 -92.72 -0.77 14.49 16 29 H 0.10 1.55 7.01 -2.38 -0.02 1.54 16 30 H 0.09 1.82 5.48 -2.39 -0.01 1.81 16 31 H 0.07 2.02 6.66 -2.38 -0.02 2.01 16 32 H 0.19 1.89 4.93 -2.91 -0.01 1.88 16 33 H 0.19 0.38 8.06 -2.91 -0.02 0.35 16 34 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -76.94 295.47 6.76 -70.18 By element: Atomic # 1 Polarization: -1.01 SS G_CDS: 0.96 Total: -0.04 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.95 Total: 6.31 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -1.63 Total: -89.10 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.06 Total: -28.64 kcal Atomic # 9 Polarization: -4.93 SS G_CDS: 0.72 Total: -4.21 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.81 Total: 45.49 kcal Total: -76.94 6.76 -70.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353566273.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.858 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds