Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34752 * 116.99980 * 270.00256 * 13 3 2 15 15 O 1.21516 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47396 * 120.00055 * 179.97438 * 14 13 3 17 17 C 1.39581 * 120.05914 * 359.72681 * 16 14 13 18 18 C 1.37764 * 120.18172 * 179.79075 * 17 16 14 19 19 C 1.38653 * 119.98159 * 0.45248 * 18 17 16 20 20 C 1.37658 * 120.33546 * 359.63141 * 19 18 17 21 21 C 1.38878 * 120.87578 * 0.31685 * 20 19 18 22 22 O 1.35838 * 111.32086 * 179.30516 * 21 20 19 23 23 C 1.43768 * 109.29513 * 18.84686 * 22 21 20 24 24 C 1.51675 * 132.13763 * 180.57181 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.91073 * 0.07464 * 17 16 14 32 32 H 1.07999 * 120.00837 * 180.15348 * 18 17 16 33 33 H 1.08003 * 119.83441 * 179.64451 * 19 18 17 34 34 H 1.09002 * 110.75147 * 90.66944 * 23 22 21 35 35 H 1.09002 * 110.75357 * 213.84374 * 23 22 21 36 36 H 1.09005 * 110.94699 * 46.13111 * 24 20 19 37 37 H 1.08998 * 110.97745 * 282.44003 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4682 2.7279 1.2561 15 8 -0.2273 2.7402 0.2598 16 6 0.0127 3.4088 2.4814 17 6 0.8080 3.3905 3.6283 18 6 0.3867 4.0298 4.7736 19 6 -0.8347 4.6857 4.7916 20 6 -1.6282 4.7087 3.6669 21 6 -1.2273 4.0735 2.4988 22 8 -2.1598 4.2055 1.5199 23 6 -3.0343 5.3004 1.8413 24 6 -2.9783 5.3406 3.3868 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 1.7585 2.8777 3.6165 32 1 1.0055 4.0160 5.6587 33 1 -1.1653 5.1812 5.6926 34 1 -2.6592 6.2317 1.4169 35 1 -4.0478 5.1000 1.4939 36 1 -3.0112 6.3674 3.7514 37 1 -3.7838 4.7488 3.8215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514948023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -96.802696 kcal Electronic energy + Delta-G solvation = -21428.929538 eV Core-core repulsion = 18136.706332 eV Total energy + Delta-G solvation = -3292.223205 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.19330 -39.26152 -37.31176 -35.59720 -33.44854 -32.73759 -31.29933 -30.25380 -29.30709 -27.21478 -24.38223 -23.35436 -22.71977 -21.91312 -20.59530 -19.37058 -17.44180 -17.19510 -16.65283 -16.30010 -16.18357 -15.42960 -15.07794 -14.80221 -14.43412 -13.61021 -13.30682 -13.19430 -13.02326 -12.77181 -12.57156 -12.06824 -11.88098 -11.79579 -11.39247 -11.29444 -11.16243 -11.11049 -10.92772 -10.91031 -10.57490 -10.23880 -9.72476 -9.50303 -9.28024 -8.92526 -8.73856 -8.40320 -8.17866 -6.13980 -4.20873 0.90863 1.30317 3.09217 3.25636 3.27236 3.32547 3.36280 3.69860 3.96941 4.25123 4.35932 4.46546 4.79965 4.88465 5.07513 5.13759 5.17941 5.29514 5.41318 5.53636 5.59995 5.68025 5.94868 6.23037 6.27393 6.31914 6.38234 6.41346 6.55432 6.59814 6.95373 7.04633 7.12956 7.25041 7.33094 7.66761 7.80226 8.01744 8.21551 8.71638 8.96366 9.44094 10.92874 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.004699 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.327046 B = 5957.431996 C = 6453.928471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.353 6.353 14 C 0.493 3.507 15 O -0.500 6.500 16 C -0.135 4.135 17 C -0.029 4.029 18 C -0.165 4.165 19 C -0.045 4.045 20 C -0.197 4.197 21 C 0.167 3.833 22 O -0.276 6.276 23 C 0.045 3.955 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.266 0.734 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 8.905 13.223 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.197 1.197 13 O -0.270 6.270 14 C 0.337 3.663 15 O -0.391 6.391 16 C -0.137 4.137 17 C -0.047 4.047 18 C -0.183 4.183 19 C -0.064 4.064 20 C -0.198 4.198 21 C 0.120 3.880 22 O -0.188 6.188 23 C -0.031 4.031 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.126 0.874 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.527 8.661 12.480 18.482 hybrid contribution 0.763 0.009 -0.156 0.779 sum -9.764 8.670 12.324 17.955 Atomic orbital electron populations 1.21856 0.98346 0.98902 1.00874 1.22012 0.92656 0.99352 1.03273 1.20668 0.94917 0.88734 0.78683 0.93514 1.21043 0.89668 1.38859 1.06219 0.91337 1.24884 0.99160 0.94831 0.95070 1.69900 1.35317 1.37891 1.09458 0.86292 0.84001 0.78631 0.77312 1.20381 1.21013 1.19651 1.86513 1.33715 1.62681 1.44095 1.20711 0.81208 0.77222 0.87205 1.90824 1.55280 1.58080 1.34875 1.18788 0.93123 1.06636 0.95121 1.21389 0.98725 0.94304 0.90282 1.21006 0.97194 1.01241 0.98870 1.20449 0.93065 0.96458 0.96379 1.20717 0.98025 1.06384 0.94645 1.19492 0.88188 0.93047 0.87275 1.87031 1.39319 1.48780 1.43621 1.23928 0.95097 0.89838 0.94198 1.21773 0.94461 1.01988 0.96037 0.92810 0.94919 0.94899 0.94010 0.87375 0.92435 0.83255 0.84788 0.85533 0.90353 0.87440 0.89034 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.56 37.16 0.32 -3.00 16 2 C -0.13 -3.47 5.49 -26.74 -0.15 -3.62 16 3 C 0.22 6.10 2.25 -27.89 -0.06 6.03 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.75 8.90 -34.44 -0.31 -15.06 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.44 11.30 55.43 0.63 -24.82 16 9 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 O -0.35 -8.73 9.03 -40.63 -0.37 -9.10 16 14 C 0.49 11.35 6.34 34.46 0.22 11.57 16 15 O -0.50 -12.75 13.05 -24.90 -0.32 -13.08 16 16 C -0.13 -2.50 5.89 -104.74 -0.62 -3.11 16 17 C -0.03 -0.43 9.59 -39.25 -0.38 -0.81 16 18 C -0.16 -1.91 10.05 -39.60 -0.40 -2.30 16 19 C -0.05 -0.49 10.02 -39.64 -0.40 -0.89 16 20 C -0.20 -2.48 6.27 -104.12 -0.65 -3.13 16 21 C 0.17 2.80 6.73 -38.42 -0.26 2.54 16 22 O -0.28 -4.69 10.12 -34.84 -0.35 -5.04 16 23 C 0.04 0.48 8.01 38.06 0.30 0.78 16 24 C -0.11 -0.96 7.12 -26.50 -0.19 -1.15 16 25 H 0.05 1.31 7.79 -51.93 -0.40 0.91 16 26 H 0.03 0.75 6.06 -51.93 -0.31 0.43 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.11 2.99 5.95 -51.93 -0.31 2.68 16 30 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.15 2.20 7.59 -52.49 -0.40 1.80 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -32.92 310.50 -8.14 -41.06 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.73 Total: 0.59 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -2.66 Total: -10.50 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.63 Total: -24.82 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -1.04 Total: -27.21 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.92 -8.14 -41.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514948023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.744 kcal (2) G-P(sol) polarization free energy of solvation -32.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds