Wall clock time and date at job start Mon Mar 30 2020 02:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34752 * 116.99980 * 270.00256 * 13 3 2 15 15 O 1.21516 * 119.99805 * 359.97438 * 14 13 3 16 16 C 1.47396 * 120.00055 * 179.97438 * 14 13 3 17 17 C 1.39581 * 120.05914 * 359.72681 * 16 14 13 18 18 C 1.37764 * 120.18172 * 179.79075 * 17 16 14 19 19 C 1.38653 * 119.98159 * 0.45248 * 18 17 16 20 20 C 1.37658 * 120.33546 * 359.63141 * 19 18 17 21 21 C 1.38878 * 120.87578 * 0.31685 * 20 19 18 22 22 O 1.35838 * 111.32086 * 179.30516 * 21 20 19 23 23 C 1.43768 * 109.29513 * 18.84686 * 22 21 20 24 24 C 1.51675 * 132.13763 * 180.57181 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 1.08002 * 119.91073 * 0.07464 * 17 16 14 32 32 H 1.07999 * 120.00837 * 180.15348 * 18 17 16 33 33 H 1.08003 * 119.83441 * 179.64451 * 19 18 17 34 34 H 1.09002 * 110.75147 * 90.66944 * 23 22 21 35 35 H 1.09002 * 110.75357 * 213.84374 * 23 22 21 36 36 H 1.09005 * 110.94699 * 46.13111 * 24 20 19 37 37 H 1.08998 * 110.97745 * 282.44003 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4682 2.7279 1.2561 15 8 -0.2273 2.7402 0.2598 16 6 0.0127 3.4088 2.4814 17 6 0.8080 3.3905 3.6283 18 6 0.3867 4.0298 4.7736 19 6 -0.8347 4.6857 4.7916 20 6 -1.6282 4.7087 3.6669 21 6 -1.2273 4.0735 2.4988 22 8 -2.1598 4.2055 1.5199 23 6 -3.0343 5.3004 1.8413 24 6 -2.9783 5.3406 3.3868 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 1.7585 2.8777 3.6165 32 1 1.0055 4.0160 5.6587 33 1 -1.1653 5.1812 5.6926 34 1 -2.6592 6.2317 1.4169 35 1 -4.0478 5.1000 1.4939 36 1 -3.0112 6.3674 3.7514 37 1 -3.7838 4.7488 3.8215 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514948023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:27 Heat of formation + Delta-G solvation = -116.306476 kcal Electronic energy + Delta-G solvation = -21429.775285 eV Core-core repulsion = 18136.706332 eV Total energy + Delta-G solvation = -3293.068952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.28814 -41.04759 -38.41766 -37.53145 -35.50051 -33.83851 -33.30365 -31.38141 -30.28044 -29.28898 -25.89060 -24.93261 -24.01885 -22.94839 -22.29473 -21.21306 -19.04228 -18.51789 -18.29326 -17.75000 -17.38502 -16.99002 -16.84728 -16.35414 -15.79467 -15.01775 -14.79914 -14.58867 -14.33881 -14.02066 -13.90499 -13.57019 -13.36418 -13.33402 -13.11012 -12.84214 -12.78882 -12.69015 -12.55530 -12.21503 -12.14529 -11.82592 -11.79965 -11.45197 -11.23483 -10.84407 -10.54043 -10.01287 -9.22661 -8.27981 -6.45587 -0.28225 0.27087 1.40884 1.43802 1.54765 1.65383 2.00221 2.25030 2.41906 2.71553 3.01345 3.41296 3.60583 3.85581 3.96585 4.14617 4.20787 4.31390 4.34170 4.34713 4.42031 4.52789 4.60126 4.78920 4.81603 4.88935 4.96989 5.02616 5.17470 5.18341 5.26712 5.34576 5.39379 5.49776 5.63457 5.64754 5.94491 6.08037 6.11835 6.59674 6.99461 7.26181 8.79354 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.004699 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.327046 B = 5957.431996 C = 6453.928471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.127 4.127 3 C 0.226 3.774 4 H 0.001 0.999 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.265 1.265 13 O -0.358 6.358 14 C 0.486 3.514 15 O -0.540 6.540 16 C -0.179 4.179 17 C -0.042 4.042 18 C -0.150 4.150 19 C -0.025 4.025 20 C -0.191 4.191 21 C 0.140 3.860 22 O -0.321 6.321 23 C 0.031 3.969 24 C -0.093 4.093 25 H 0.032 0.968 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.271 0.729 31 H 0.141 0.859 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.084 0.916 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 10.217 16.458 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.275 6.275 14 C 0.333 3.667 15 O -0.432 6.432 16 C -0.180 4.180 17 C -0.060 4.060 18 C -0.167 4.167 19 C -0.043 4.043 20 C -0.192 4.192 21 C 0.093 3.907 22 O -0.234 6.234 23 C -0.043 4.043 24 C -0.129 4.129 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.838 9.983 15.739 21.561 hybrid contribution 0.734 -0.303 -1.106 1.361 sum -10.104 9.680 14.633 20.247 Atomic orbital electron populations 1.21688 0.96663 1.00445 0.99690 1.21857 0.94091 0.98117 1.02465 1.20388 0.94746 0.89192 0.78445 0.98143 1.21319 0.90164 1.40133 1.07108 0.91447 1.25857 1.04516 0.93748 0.94184 1.70031 1.37570 1.37907 1.09869 0.85158 0.77292 0.79197 0.77599 1.18971 1.20276 1.18974 1.86499 1.35231 1.63231 1.42534 1.21687 0.79935 0.76422 0.88704 1.90778 1.55973 1.59685 1.36763 1.18797 0.95544 1.09494 0.94204 1.21450 0.98292 0.95501 0.90760 1.21458 0.97832 0.99072 0.98364 1.21054 0.91675 0.94353 0.97213 1.21246 0.99515 1.05019 0.93443 1.19835 0.87844 0.93903 0.89098 1.86970 1.40300 1.51040 1.45101 1.24337 0.95177 0.88564 0.96251 1.21870 0.92776 1.04028 0.94275 0.94880 0.95213 0.91751 0.93354 0.89294 0.91997 0.84090 0.80839 0.80464 0.89768 0.85280 0.85487 0.87235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.56 71.98 0.62 -5.60 16 2 C -0.13 -6.87 5.49 30.59 0.17 -6.71 16 3 C 0.23 13.19 2.25 29.85 0.07 13.26 16 4 H 0.00 0.05 7.16 -2.39 -0.02 0.03 16 5 C -0.55 -32.54 8.90 25.60 0.23 -32.31 16 6 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.92 -54.22 11.30 21.45 0.24 -53.97 16 9 Si 0.98 43.93 29.54 68.60 2.03 45.96 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 13 O -0.36 -18.95 9.03 -56.62 -0.51 -19.47 16 14 C 0.49 24.10 6.34 70.23 0.45 24.54 16 15 O -0.54 -29.92 13.05 25.16 0.33 -29.59 16 16 C -0.18 -6.90 5.89 -19.94 -0.12 -7.02 16 17 C -0.04 -1.25 9.59 22.48 0.22 -1.04 16 18 C -0.15 -2.93 10.05 22.26 0.22 -2.71 16 19 C -0.03 -0.42 10.02 22.23 0.22 -0.20 16 20 C -0.19 -4.25 6.27 -19.54 -0.12 -4.37 16 21 C 0.14 4.74 6.73 23.03 0.15 4.90 16 22 O -0.32 -11.29 10.12 -76.81 -0.78 -12.07 16 23 C 0.03 0.62 8.01 72.56 0.58 1.20 16 24 C -0.09 -1.33 7.12 30.74 0.22 -1.11 16 25 H 0.03 1.70 7.79 -2.39 -0.02 1.69 16 26 H 0.03 1.43 6.06 -2.39 -0.01 1.41 16 27 H 0.06 2.67 8.14 -2.38 -0.02 2.65 16 28 H 0.05 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.09 5.15 5.95 -2.39 -0.01 5.14 16 30 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 31 H 0.14 4.30 7.59 -2.91 -0.02 4.28 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 0.97 8.14 -2.38 -0.02 0.95 16 37 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.77 310.50 5.73 -73.03 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.08 Total: 11.88 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 3.35 Total: -15.78 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: 0.24 Total: -53.97 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -0.96 Total: -61.12 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -78.77 5.73 -73.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514948023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.273 kcal (2) G-P(sol) polarization free energy of solvation -78.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds