Wall clock time and date at job start Mon Mar 30 2020 02:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34754 * 116.99713 * 89.99667 * 13 3 2 15 15 O 1.21498 * 120.00422 * 0.02562 * 14 13 3 16 16 C 1.47398 * 119.99450 * 180.02562 * 14 13 3 17 17 C 1.39587 * 120.06261 * 359.72005 * 16 14 13 18 18 C 1.37762 * 120.18664 * 179.84062 * 17 16 14 19 19 C 1.38661 * 119.97758 * 0.40731 * 18 17 16 20 20 C 1.37661 * 120.33455 * 359.65238 * 19 18 17 21 21 C 1.38873 * 120.87609 * 0.32253 * 20 19 18 22 22 O 1.35848 * 111.32093 * 179.30309 * 21 20 19 23 23 C 1.43764 * 109.29157 * 18.84313 * 22 21 20 24 24 C 1.51674 * 132.13518 * 180.56941 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.08005 * 119.90597 * 0.09968 * 17 16 14 32 32 H 1.07995 * 120.01618 * 180.13162 * 18 17 16 33 33 H 1.08003 * 119.83508 * 179.67321 * 19 18 17 34 34 H 1.08997 * 110.75578 * 90.66905 * 23 22 21 35 35 H 1.09003 * 110.75108 * 213.84786 * 23 22 21 36 36 H 1.09001 * 110.94721 * 46.13316 * 24 20 19 37 37 H 1.08999 * 110.97805 * 282.44363 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7279 -1.2559 15 8 -0.2273 2.7403 -0.2597 16 6 0.0126 3.4089 -2.4812 17 6 0.8132 3.4005 -3.6247 18 6 0.3885 4.0333 -4.7723 19 6 -0.8336 4.6881 -4.7906 20 6 -1.6308 4.7039 -3.6685 21 6 -1.2273 4.0736 -2.4987 22 8 -2.1506 4.2228 -1.5134 23 6 -3.4130 4.5872 -2.0968 24 6 -2.9925 5.3140 -3.3961 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 1.7664 2.8928 -3.6109 32 1 1.0092 4.0232 -5.6560 33 1 -1.1619 5.1880 -5.6900 34 1 -4.0037 3.6999 -2.3246 35 1 -3.9642 5.2574 -1.4372 36 1 -3.6868 5.0952 -4.2074 37 1 -2.9130 6.3888 -3.2332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514948024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:29 Heat of formation + Delta-G solvation = -96.777401 kcal Electronic energy + Delta-G solvation = -21433.380937 eV Core-core repulsion = 18141.158829 eV Total energy + Delta-G solvation = -3292.222108 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19392 -39.26395 -37.31186 -35.59999 -33.44962 -32.73787 -31.30307 -30.25427 -29.30801 -27.21657 -24.38248 -23.35434 -22.72444 -21.91324 -20.59735 -19.37204 -17.43920 -17.19608 -16.68269 -16.29090 -16.15444 -15.45353 -15.05608 -14.80433 -14.44570 -13.65685 -13.29924 -13.19330 -12.87112 -12.77593 -12.72107 -12.03573 -11.87752 -11.80194 -11.39448 -11.30885 -11.16262 -11.11480 -10.92556 -10.89065 -10.60032 -10.23531 -9.72173 -9.50338 -9.29148 -8.92503 -8.73280 -8.40497 -8.18004 -6.13928 -4.20774 0.90840 1.30319 3.09336 3.25498 3.27458 3.32670 3.36392 3.69780 3.96955 4.25079 4.35967 4.46561 4.79701 4.88407 5.07527 5.13693 5.18060 5.29334 5.41256 5.53682 5.59852 5.67992 5.94830 6.23020 6.27025 6.31099 6.37635 6.41101 6.54663 6.59801 6.94844 7.03942 7.12833 7.24519 7.32741 7.66725 7.80067 8.01645 8.21522 8.71680 8.96418 9.44189 10.92948 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027472 B = 0.004714 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.986327 B = 5938.241536 C = 6495.260035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.047 0.953 5 C -0.520 4.520 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.353 6.353 14 C 0.493 3.507 15 O -0.500 6.500 16 C -0.135 4.135 17 C -0.029 4.029 18 C -0.165 4.165 19 C -0.045 4.045 20 C -0.197 4.197 21 C 0.167 3.833 22 O -0.276 6.276 23 C 0.045 3.955 24 C -0.106 4.106 25 H 0.031 0.969 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.108 0.892 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.150 0.850 32 H 0.134 0.866 33 H 0.127 0.873 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.877 7.862 -13.596 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.558 4.558 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.270 6.270 14 C 0.337 3.663 15 O -0.390 6.390 16 C -0.137 4.137 17 C -0.047 4.047 18 C -0.183 4.183 19 C -0.064 4.064 20 C -0.198 4.198 21 C 0.120 3.880 22 O -0.187 6.187 23 C -0.031 4.031 24 C -0.143 4.143 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.126 0.874 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.167 0.833 32 H 0.152 0.848 33 H 0.145 0.855 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.024 7.703 -12.825 18.584 hybrid contribution 0.739 -0.015 0.151 0.754 sum -10.286 7.689 -12.674 18.043 Atomic orbital electron populations 1.21856 0.98378 0.98879 1.00853 1.22010 0.92634 0.99362 1.03278 1.20666 0.94927 0.88730 0.78689 0.93518 1.21042 0.89669 1.38840 1.06239 0.91336 1.24881 0.99167 0.94805 0.95088 1.69898 1.35336 1.37913 1.09428 0.86291 0.83984 0.77650 0.78314 1.20446 1.20986 1.19603 1.86513 1.33679 1.62714 1.44097 1.20706 0.81209 0.77251 0.87176 1.90819 1.55258 1.58133 1.34835 1.18792 0.94799 1.04973 0.95111 1.21390 0.98646 0.94373 0.90292 1.21007 0.96904 1.01589 0.98807 1.20453 0.93077 0.96431 0.96393 1.20716 0.99184 1.04641 0.95226 1.19493 0.89928 0.91432 0.87153 1.87035 1.18311 1.83724 1.29669 1.23925 0.85409 0.99615 0.94111 1.21774 0.93420 1.00857 0.98212 0.94951 0.92801 0.94907 0.87371 0.94004 0.92435 0.83253 0.84787 0.85532 0.90383 0.87436 0.89044 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.56 37.16 0.32 -2.97 16 2 C -0.13 -3.46 5.49 -26.74 -0.15 -3.60 16 3 C 0.22 6.09 2.25 -27.89 -0.06 6.03 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.05 16 5 C -0.52 -14.76 8.90 -34.44 -0.31 -15.07 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.45 11.29 55.43 0.63 -24.83 16 9 Si 0.91 21.25 29.54 -169.99 -5.02 16.23 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 13 O -0.35 -8.73 9.03 -40.64 -0.37 -9.10 16 14 C 0.49 11.35 6.34 34.46 0.22 11.57 16 15 O -0.50 -12.75 13.05 -24.88 -0.32 -13.07 16 16 C -0.13 -2.50 5.89 -104.74 -0.62 -3.11 16 17 C -0.03 -0.43 9.59 -39.25 -0.38 -0.81 16 18 C -0.16 -1.91 10.05 -39.60 -0.40 -2.30 16 19 C -0.05 -0.49 10.02 -39.64 -0.40 -0.89 16 20 C -0.20 -2.48 6.27 -104.12 -0.65 -3.13 16 21 C 0.17 2.80 6.73 -38.42 -0.26 2.54 16 22 O -0.28 -4.69 10.12 -34.87 -0.35 -5.04 16 23 C 0.04 0.48 8.01 38.06 0.30 0.78 16 24 C -0.11 -0.96 7.12 -26.50 -0.19 -1.15 16 25 H 0.03 0.73 6.06 -51.93 -0.31 0.42 16 26 H 0.05 1.31 7.79 -51.93 -0.40 0.90 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.11 2.98 5.95 -51.93 -0.31 2.67 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.15 2.20 7.59 -52.48 -0.40 1.80 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -32.93 310.50 -8.14 -41.07 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.73 Total: 0.54 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -2.66 Total: -10.48 kcal Atomic # 7 Polarization: -25.45 SS G_CDS: 0.63 Total: -24.83 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -1.04 Total: -27.21 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.93 -8.14 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514948024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.706 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds