Wall clock time and date at job start Mon Mar 30 2020 02:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48490 * 109.47273 * 89.99733 * 9 7 5 11 11 H 1.48496 * 109.47169 * 210.00187 * 9 7 5 12 12 H 1.48505 * 109.46665 * 329.99637 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34754 * 116.99713 * 89.99667 * 13 3 2 15 15 O 1.21498 * 120.00422 * 0.02562 * 14 13 3 16 16 C 1.47398 * 119.99450 * 180.02562 * 14 13 3 17 17 C 1.39587 * 120.06261 * 359.72005 * 16 14 13 18 18 C 1.37762 * 120.18664 * 179.84062 * 17 16 14 19 19 C 1.38661 * 119.97758 * 0.40731 * 18 17 16 20 20 C 1.37661 * 120.33455 * 359.65238 * 19 18 17 21 21 C 1.38873 * 120.87609 * 0.32253 * 20 19 18 22 22 O 1.35848 * 111.32093 * 179.30309 * 21 20 19 23 23 C 1.43764 * 109.29157 * 18.84313 * 22 21 20 24 24 C 1.51674 * 132.13518 * 180.56941 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 31 31 H 1.08005 * 119.90597 * 0.09968 * 17 16 14 32 32 H 1.07995 * 120.01618 * 180.13162 * 18 17 16 33 33 H 1.08003 * 119.83508 * 179.67321 * 19 18 17 34 34 H 1.08997 * 110.75578 * 90.66905 * 23 22 21 35 35 H 1.09003 * 110.75108 * 213.84786 * 23 22 21 36 36 H 1.09001 * 110.94721 * 46.13316 * 24 20 19 37 37 H 1.08999 * 110.97805 * 282.44363 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.4429 2.1127 2.0836 11 1 6.4391 -0.3112 2.1545 12 1 6.6131 0.8392 0.0269 13 8 1.6559 2.0917 -1.2407 14 6 0.4681 2.7279 -1.2559 15 8 -0.2273 2.7403 -0.2597 16 6 0.0126 3.4089 -2.4812 17 6 0.8132 3.4005 -3.6247 18 6 0.3885 4.0333 -4.7723 19 6 -0.8336 4.6881 -4.7906 20 6 -1.6308 4.7039 -3.6685 21 6 -1.2273 4.0736 -2.4987 22 8 -2.1506 4.2228 -1.5134 23 6 -3.4130 4.5872 -2.0968 24 6 -2.9925 5.3140 -3.3961 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8293 -0.0605 2.9503 31 1 1.7664 2.8928 -3.6109 32 1 1.0092 4.0232 -5.6560 33 1 -1.1619 5.1880 -5.6900 34 1 -4.0037 3.6999 -2.3246 35 1 -3.9642 5.2574 -1.4372 36 1 -3.6868 5.0952 -4.2074 37 1 -2.9130 6.3888 -3.2332 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001514948024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:28 Heat of formation + Delta-G solvation = -116.304066 kcal Electronic energy + Delta-G solvation = -21434.227677 eV Core-core repulsion = 18141.158829 eV Total energy + Delta-G solvation = -3293.068848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.28816 -41.04901 -38.41705 -37.53347 -35.50074 -33.83843 -33.30279 -31.38118 -30.27977 -29.28840 -25.89072 -24.93092 -24.01980 -22.94805 -22.29375 -21.21258 -19.03958 -18.51207 -18.32116 -17.74509 -17.27818 -17.14116 -16.77896 -16.35974 -15.79501 -15.07648 -14.80658 -14.47724 -14.23821 -14.17382 -13.95872 -13.44458 -13.41538 -13.34540 -13.11401 -12.82673 -12.79755 -12.68787 -12.57669 -12.21634 -12.13204 -11.82764 -11.78457 -11.46135 -11.23850 -10.83164 -10.54826 -10.01275 -9.22660 -8.28044 -6.45598 -0.28196 0.27136 1.40822 1.43469 1.54968 1.65447 2.00192 2.25235 2.41882 2.71366 3.01360 3.41315 3.60778 3.85580 3.96630 4.14783 4.20824 4.31558 4.34299 4.34733 4.42034 4.52898 4.60178 4.78956 4.81641 4.88913 4.97079 5.02620 5.17535 5.18453 5.26765 5.34671 5.39432 5.49761 5.63590 5.64785 5.94564 6.08086 6.11899 6.59632 6.99505 7.26149 8.79308 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.027472 B = 0.004714 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.986327 B = 5938.241536 C = 6495.260035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.225 3.775 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.985 3.015 10 H -0.273 1.273 11 H -0.274 1.274 12 H -0.261 1.261 13 O -0.358 6.358 14 C 0.486 3.514 15 O -0.539 6.539 16 C -0.179 4.179 17 C -0.042 4.042 18 C -0.150 4.150 19 C -0.025 4.025 20 C -0.191 4.191 21 C 0.140 3.860 22 O -0.321 6.321 23 C 0.031 3.969 24 C -0.093 4.093 25 H 0.029 0.971 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.141 0.859 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.237 9.081 -16.868 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.165 4.165 3 C 0.172 3.828 4 H 0.018 0.982 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.807 3.193 10 H -0.199 1.199 11 H -0.199 1.199 12 H -0.185 1.185 13 O -0.275 6.275 14 C 0.333 3.667 15 O -0.432 6.432 16 C -0.180 4.180 17 C -0.060 4.060 18 C -0.167 4.167 19 C -0.043 4.043 20 C -0.192 4.192 21 C 0.093 3.907 22 O -0.234 6.234 23 C -0.043 4.043 24 C -0.130 4.130 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.159 0.841 32 H 0.192 0.808 33 H 0.195 0.805 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.406 8.931 -16.121 21.674 hybrid contribution 0.724 -0.308 1.109 1.359 sum -10.682 8.623 -15.013 20.343 Atomic orbital electron populations 1.21687 0.96633 1.00453 0.99697 1.21852 0.94129 0.98070 1.02468 1.20387 0.94741 0.89222 0.78438 0.98190 1.21322 0.90184 1.40109 1.07126 0.91453 1.25854 1.04512 0.93732 0.94207 1.70028 1.37585 1.37922 1.09835 0.85161 0.77301 0.78009 0.78803 1.19867 1.19866 1.18481 1.86500 1.35197 1.63265 1.42534 1.21682 0.79935 0.76457 0.88669 1.90773 1.55962 1.59726 1.36725 1.18800 0.97165 1.07910 0.94170 1.21451 0.98249 0.95545 0.90758 1.21458 0.97546 0.99417 0.98303 1.21057 0.91690 0.94336 0.97211 1.21244 1.00675 1.03354 0.93949 1.19835 0.89589 0.92357 0.88890 1.86974 1.20506 1.84156 1.31798 1.24335 0.83459 1.00821 0.95689 1.21872 0.91823 1.01265 0.98017 0.95171 0.94892 0.91724 0.89314 0.93330 0.91993 0.84098 0.80842 0.80466 0.89620 0.85362 0.85423 0.87343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.17 8.56 71.98 0.62 -5.55 16 2 C -0.13 -6.85 5.49 30.59 0.17 -6.68 16 3 C 0.23 13.18 2.25 29.85 0.07 13.25 16 4 H 0.00 0.02 7.16 -2.39 -0.02 0.00 16 5 C -0.55 -32.58 8.90 25.60 0.23 -32.35 16 6 H 0.07 3.89 7.81 -2.91 -0.02 3.86 16 7 C 0.02 0.94 5.29 84.65 0.45 1.39 16 8 N -0.92 -54.24 11.29 21.45 0.24 -54.00 16 9 Si 0.98 43.99 29.54 68.60 2.03 46.02 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 13 O -0.36 -18.95 9.03 -56.64 -0.51 -19.47 16 14 C 0.49 24.09 6.34 70.23 0.45 24.54 16 15 O -0.54 -29.90 13.05 25.21 0.33 -29.58 16 16 C -0.18 -6.90 5.89 -19.94 -0.12 -7.02 16 17 C -0.04 -1.25 9.59 22.48 0.22 -1.04 16 18 C -0.15 -2.93 10.05 22.26 0.22 -2.71 16 19 C -0.03 -0.42 10.02 22.23 0.22 -0.20 16 20 C -0.19 -4.24 6.27 -19.54 -0.12 -4.37 16 21 C 0.14 4.74 6.73 23.02 0.15 4.90 16 22 O -0.32 -11.30 10.12 -76.91 -0.78 -12.07 16 23 C 0.03 0.62 8.01 72.56 0.58 1.20 16 24 C -0.09 -1.33 7.12 30.74 0.22 -1.11 16 25 H 0.03 1.44 6.06 -2.39 -0.01 1.42 16 26 H 0.03 1.69 7.79 -2.39 -0.02 1.67 16 27 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 28 H 0.09 5.13 5.95 -2.39 -0.01 5.11 16 29 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 31 H 0.14 4.30 7.59 -2.91 -0.02 4.28 16 32 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.18 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.84 310.50 5.73 -73.10 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.08 Total: 11.74 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: 3.35 Total: -15.75 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: 0.24 Total: -54.00 kcal Atomic # 8 Polarization: -60.15 SS G_CDS: -0.96 Total: -61.12 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -78.84 5.73 -73.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514948024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.199 kcal (2) G-P(sol) polarization free energy of solvation -78.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds