Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99555 * 2 1 4 4 H 1.48502 * 109.47133 * 240.00165 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46893 * 119.99994 * 3 2 1 7 7 C 1.37872 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.08988 * 109.47423 * 300.00585 * 9 7 2 11 11 O 1.45194 * 109.47106 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99915 * 150.00403 * 11 9 7 13 13 O 1.20824 * 119.99858 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00069 * 180.02562 * 12 11 9 15 15 H 1.08998 * 110.67446 * 56.76799 * 14 12 11 16 16 C 1.54897 * 110.75543 * 179.97438 * 14 12 11 17 17 C 1.54264 * 104.19493 * 156.25554 * 16 14 12 18 18 H 1.09000 * 117.41471 * 116.37063 * 17 16 14 19 19 C 1.55475 * 118.30087 * 272.80155 * 17 16 14 20 20 C 1.53010 * 59.83672 * 93.29396 * 19 17 16 21 21 H 1.09000 * 119.29445 * 111.70996 * 20 19 17 22 22 C 1.54263 * 118.19847 * 265.84839 * 20 19 17 23 23 C 1.50703 * 109.46742 * 60.00468 * 9 7 2 24 24 C 1.34519 * 125.78996 * 264.71093 * 23 9 7 25 25 C 1.41383 * 106.83998 * 179.89206 * 24 23 9 26 26 C 1.34509 * 106.84283 * 0.37148 * 25 24 23 27 27 O 1.34305 * 108.42125 * 359.77504 * 26 25 24 28 28 H 0.96997 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.48266 * 274.93623 * 16 14 12 30 30 H 1.09000 * 110.48216 * 37.57478 * 16 14 12 31 31 H 1.08999 * 118.05817 * 346.16428 * 19 17 16 32 32 H 1.08996 * 117.16537 * 200.82680 * 19 17 16 33 33 H 1.09001 * 110.48682 * 330.32619 * 22 20 19 34 34 H 1.09000 * 110.59778 * 207.73664 * 22 20 19 35 35 H 1.08000 * 126.57335 * 0.03599 * 24 23 9 36 36 H 1.08002 * 126.57372 * 180.13222 * 25 24 23 37 37 H 1.08001 * 125.79064 * 179.74864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8895 11 8 2.1947 -3.6026 -0.0018 12 6 1.8040 -4.7392 0.5960 13 8 0.7095 -4.8097 1.1030 14 6 2.7303 -5.9273 0.6347 15 1 3.6775 -5.6616 1.1042 16 6 2.0670 -7.1167 1.3726 17 6 2.7979 -8.3586 0.8219 18 1 3.3824 -8.9504 1.5264 19 6 2.2572 -9.0154 -0.4794 20 6 3.3643 -7.9617 -0.5527 21 1 4.3660 -8.2611 -0.8608 22 6 2.9578 -6.4925 -0.7893 23 6 0.3844 -2.5787 -1.2308 24 6 -0.9157 -2.2404 -1.3004 25 6 -1.3275 -2.4684 -2.6335 26 6 -0.2567 -2.9402 -3.2969 27 8 0.7773 -3.0049 -2.4423 28 1 -0.4850 0.8400 0.0004 29 1 2.2188 -7.0305 2.4486 30 1 1.0034 -7.1652 1.1391 31 1 1.2648 -8.7265 -0.8254 32 1 2.5368 -10.0520 -0.6669 33 1 2.0380 -6.4403 -1.3719 34 1 3.7581 -5.9494 -1.2920 35 1 -1.5269 -1.8644 -0.4932 36 1 -2.3138 -2.3001 -3.0402 37 1 -0.2326 -3.2199 -4.3398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518000123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = -48.415837 kcal Electronic energy + Delta-G solvation = -21620.592388 eV Core-core repulsion = 18330.467395 eV Total energy + Delta-G solvation = -3290.124993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34111 -40.12993 -38.56318 -35.70383 -33.31693 -31.85330 -31.67965 -29.57964 -28.22008 -26.68709 -24.44998 -22.74589 -21.14526 -20.53831 -19.92734 -19.55494 -19.09842 -17.14226 -16.72088 -16.53973 -16.24793 -15.35036 -14.98546 -14.74023 -14.45478 -13.75882 -13.22762 -13.14094 -12.90436 -12.70122 -11.95039 -11.82640 -11.59917 -11.54580 -11.39183 -11.22071 -11.12754 -11.04125 -11.01101 -10.93143 -10.38407 -10.10266 -10.04447 -9.79328 -9.50345 -9.41825 -8.82726 -8.63300 -7.24237 -6.20912 -4.40355 2.88117 2.89354 3.22844 3.26112 3.27746 3.44997 3.61641 3.96076 4.19075 4.25927 4.54697 4.66230 4.77952 5.06389 5.11898 5.18171 5.38453 5.43911 5.51629 5.67753 5.74298 5.78847 5.86724 6.01352 6.07990 6.11445 6.19165 6.21715 6.37113 6.42606 6.73271 7.00224 7.17984 7.24921 7.40332 7.69470 7.73044 7.86196 8.36862 8.51910 8.78921 9.26714 10.76421 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.005556 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.328923 B = 5038.700183 C = 5719.168062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.070 3.930 3 Si 0.914 3.086 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.298 3.702 10 H 0.077 0.923 11 O -0.346 6.346 12 C 0.460 3.540 13 O -0.516 6.516 14 C -0.087 4.087 15 H 0.110 0.890 16 C -0.081 4.081 17 C -0.167 4.167 18 H 0.113 0.887 19 C -0.155 4.155 20 C -0.162 4.162 21 H 0.111 0.889 22 C -0.083 4.083 23 C 0.022 3.978 24 C -0.176 4.176 25 C -0.218 4.218 26 C -0.090 4.090 27 O -0.178 6.178 28 H 0.269 0.731 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -12.434 -1.544 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.568 4.568 8 H 0.095 0.905 9 C 0.245 3.755 10 H 0.095 0.905 11 O -0.262 6.262 12 C 0.303 3.697 13 O -0.405 6.405 14 C -0.106 4.106 15 H 0.128 0.872 16 C -0.118 4.118 17 C -0.185 4.185 18 H 0.131 0.869 19 C -0.192 4.192 20 C -0.180 4.180 21 H 0.129 0.871 22 C -0.120 4.120 23 C -0.029 4.029 24 C -0.196 4.196 25 C -0.238 4.238 26 C -0.158 4.158 27 O -0.075 6.075 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.733 -12.351 -1.463 12.985 hybrid contribution -0.047 1.222 -0.229 1.244 sum 3.686 -11.129 -1.692 11.845 Atomic orbital electron populations 1.70017 1.05936 1.27744 1.46554 1.24939 0.95131 0.99544 0.94005 0.86286 0.79345 0.81295 0.78999 1.19856 1.20914 1.19723 1.20860 0.94114 0.87621 1.54169 0.90479 1.19173 0.85667 0.81896 0.88806 0.90514 1.86551 1.48344 1.21958 1.69365 1.23316 0.86598 0.84810 0.74994 1.90605 1.22723 1.83339 1.43820 1.22165 0.98771 0.91197 0.98469 0.87161 1.21847 1.00323 0.90028 0.99604 1.23619 1.04248 1.00351 0.90279 0.86944 1.23454 0.98689 0.97228 0.99840 1.23234 0.98832 0.94378 1.01536 0.87075 1.21860 1.02676 0.92803 0.94685 1.23572 0.94370 0.99714 0.85203 1.21293 0.95147 1.06138 0.97006 1.21714 0.99309 1.07161 0.95606 1.23591 0.86767 1.09714 0.95705 1.83987 1.37559 1.66786 1.19159 0.92092 0.90551 0.89876 0.88767 0.88471 0.90844 0.89755 0.83718 0.85183 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.95 10.50 55.43 0.58 -23.36 16 2 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 3 Si 0.91 20.88 29.54 -169.99 -5.02 15.86 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.53 -14.67 8.89 -34.44 -0.31 -14.98 16 8 H 0.08 2.09 7.81 -52.48 -0.41 1.68 16 9 C 0.30 7.94 2.41 -29.04 -0.07 7.87 16 10 H 0.08 2.19 7.16 -51.94 -0.37 1.82 16 11 O -0.35 -8.22 9.83 -42.08 -0.41 -8.64 16 12 C 0.46 9.56 7.23 36.01 0.26 9.82 16 13 O -0.52 -12.02 14.94 -18.75 -0.28 -12.30 16 14 C -0.09 -1.32 3.40 -89.77 -0.31 -1.63 16 15 H 0.11 1.49 8.14 -51.93 -0.42 1.06 16 16 C -0.08 -1.08 5.72 -25.07 -0.14 -1.23 16 17 C -0.17 -1.82 7.04 -88.19 -0.62 -2.44 16 18 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.16 -1.60 10.21 -25.41 -0.26 -1.86 16 20 C -0.16 -1.78 6.85 -89.50 -0.61 -2.39 16 21 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 22 C -0.08 -1.13 6.06 -25.07 -0.15 -1.29 16 23 C 0.02 0.58 5.66 -35.62 -0.20 0.38 16 24 C -0.18 -4.44 9.05 -39.70 -0.36 -4.80 16 25 C -0.22 -4.72 10.91 -39.70 -0.43 -5.15 16 26 C -0.09 -1.87 12.09 29.41 0.36 -1.52 16 27 O -0.18 -4.38 10.63 1.96 0.02 -4.36 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.26 7.44 -51.93 -0.39 0.88 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 1.12 8.04 -51.93 -0.42 0.70 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.15 3.76 7.51 -52.49 -0.39 3.36 16 36 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 37 H 0.18 2.86 8.06 -52.49 -0.42 2.44 16 LS Contribution 316.96 15.07 4.78 4.78 Total: -1.00 -30.63 316.96 -8.20 -38.83 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -4.92 Total: 6.61 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -2.94 Total: -17.42 kcal Atomic # 7 Polarization: -23.95 SS G_CDS: 0.58 Total: -23.36 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.67 Total: -25.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.63 -8.20 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.583 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds