Wall clock time and date at job start Mon Mar 30 2020 01:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99555 * 2 1 4 4 H 1.48502 * 109.47133 * 240.00165 * 3 2 1 5 5 H 1.48501 * 109.47113 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46893 * 119.99994 * 3 2 1 7 7 C 1.37872 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00199 * 359.97438 * 7 2 1 10 10 H 1.08988 * 109.47423 * 300.00585 * 9 7 2 11 11 O 1.45194 * 109.47106 * 179.97438 * 9 7 2 12 12 C 1.34233 * 116.99915 * 150.00403 * 11 9 7 13 13 O 1.20824 * 119.99858 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00069 * 180.02562 * 12 11 9 15 15 H 1.08998 * 110.67446 * 56.76799 * 14 12 11 16 16 C 1.54897 * 110.75543 * 179.97438 * 14 12 11 17 17 C 1.54264 * 104.19493 * 156.25554 * 16 14 12 18 18 H 1.09000 * 117.41471 * 116.37063 * 17 16 14 19 19 C 1.55475 * 118.30087 * 272.80155 * 17 16 14 20 20 C 1.53010 * 59.83672 * 93.29396 * 19 17 16 21 21 H 1.09000 * 119.29445 * 111.70996 * 20 19 17 22 22 C 1.54263 * 118.19847 * 265.84839 * 20 19 17 23 23 C 1.50703 * 109.46742 * 60.00468 * 9 7 2 24 24 C 1.34519 * 125.78996 * 264.71093 * 23 9 7 25 25 C 1.41383 * 106.83998 * 179.89206 * 24 23 9 26 26 C 1.34509 * 106.84283 * 0.37148 * 25 24 23 27 27 O 1.34305 * 108.42125 * 359.77504 * 26 25 24 28 28 H 0.96997 * 120.00427 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.48266 * 274.93623 * 16 14 12 30 30 H 1.09000 * 110.48216 * 37.57478 * 16 14 12 31 31 H 1.08999 * 118.05817 * 346.16428 * 19 17 16 32 32 H 1.08996 * 117.16537 * 200.82680 * 19 17 16 33 33 H 1.09001 * 110.48682 * 330.32619 * 22 20 19 34 34 H 1.09000 * 110.59778 * 207.73664 * 22 20 19 35 35 H 1.08000 * 126.57335 * 0.03599 * 24 23 9 36 36 H 1.08002 * 126.57372 * 180.13222 * 25 24 23 37 37 H 1.08001 * 125.79064 * 179.74864 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8895 11 8 2.1947 -3.6026 -0.0018 12 6 1.8040 -4.7392 0.5960 13 8 0.7095 -4.8097 1.1030 14 6 2.7303 -5.9273 0.6347 15 1 3.6775 -5.6616 1.1042 16 6 2.0670 -7.1167 1.3726 17 6 2.7979 -8.3586 0.8219 18 1 3.3824 -8.9504 1.5264 19 6 2.2572 -9.0154 -0.4794 20 6 3.3643 -7.9617 -0.5527 21 1 4.3660 -8.2611 -0.8608 22 6 2.9578 -6.4925 -0.7893 23 6 0.3844 -2.5787 -1.2308 24 6 -0.9157 -2.2404 -1.3004 25 6 -1.3275 -2.4684 -2.6335 26 6 -0.2567 -2.9402 -3.2969 27 8 0.7773 -3.0049 -2.4423 28 1 -0.4850 0.8400 0.0004 29 1 2.2188 -7.0305 2.4486 30 1 1.0034 -7.1652 1.1391 31 1 1.2648 -8.7265 -0.8254 32 1 2.5368 -10.0520 -0.6669 33 1 2.0380 -6.4403 -1.3719 34 1 3.7581 -5.9494 -1.2920 35 1 -1.5269 -1.8644 -0.4932 36 1 -2.3138 -2.3001 -3.0402 37 1 -0.2326 -3.2199 -4.3398 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518000123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:26 Heat of formation + Delta-G solvation = -64.423664 kcal Electronic energy + Delta-G solvation = -21621.286540 eV Core-core repulsion = 18330.467395 eV Total energy + Delta-G solvation = -3290.819145 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.19675 -41.63511 -39.84244 -37.53705 -35.33700 -33.54481 -33.05406 -31.46936 -29.28569 -28.61940 -25.99179 -24.46278 -22.49698 -22.16483 -21.47176 -20.82048 -20.53199 -19.01189 -18.51532 -18.28736 -17.28694 -17.18674 -16.72615 -16.49089 -16.30065 -15.23776 -14.72570 -14.38591 -14.23499 -14.10994 -13.71234 -13.55891 -13.52425 -13.20334 -13.05097 -12.80604 -12.60510 -12.35335 -12.25643 -12.20914 -12.07738 -12.00539 -11.41870 -11.29738 -10.90938 -10.82470 -10.58597 -10.52631 -9.13189 -8.24472 -6.55106 1.08597 1.22488 1.38620 1.43175 1.50132 1.84189 2.08906 2.37316 2.40085 2.65444 2.99485 3.43814 3.66639 3.77034 3.99817 4.16216 4.17657 4.25033 4.38560 4.40010 4.43154 4.56570 4.58310 4.66300 4.70261 4.91653 4.99982 5.09757 5.14074 5.15880 5.32483 5.32778 5.40031 5.41686 5.45182 5.65245 5.82160 5.93999 6.46073 6.55940 6.88710 7.17154 8.71047 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.005556 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.328923 B = 5038.700183 C = 5719.168062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.025 3.975 3 Si 0.982 3.018 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.075 0.925 9 C 0.300 3.700 10 H 0.039 0.961 11 O -0.355 6.355 12 C 0.452 3.548 13 O -0.549 6.549 14 C -0.083 4.083 15 H 0.134 0.866 16 C -0.082 4.082 17 C -0.162 4.162 18 H 0.141 0.859 19 C -0.152 4.152 20 C -0.157 4.157 21 H 0.138 0.862 22 C -0.084 4.084 23 C -0.008 4.008 24 C -0.192 4.192 25 C -0.229 4.229 26 C -0.071 4.071 27 O -0.195 6.195 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.165 0.835 37 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -13.549 -2.951 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.093 0.907 9 C 0.246 3.754 10 H 0.057 0.943 11 O -0.271 6.271 12 C 0.297 3.703 13 O -0.440 6.440 14 C -0.102 4.102 15 H 0.152 0.848 16 C -0.119 4.119 17 C -0.179 4.179 18 H 0.158 0.842 19 C -0.189 4.189 20 C -0.175 4.175 21 H 0.156 0.844 22 C -0.121 4.121 23 C -0.058 4.058 24 C -0.212 4.212 25 C -0.248 4.248 26 C -0.137 4.137 27 O -0.092 6.092 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 5.208 -13.490 -2.865 14.741 hybrid contribution -0.607 1.512 0.183 1.640 sum 4.600 -11.978 -2.682 13.108 Atomic orbital electron populations 1.70158 1.07254 1.28560 1.46546 1.25841 0.96046 1.02828 0.93157 0.85251 0.78173 0.76785 0.79338 1.19405 1.20118 1.18654 1.21126 0.94176 0.88730 1.55426 0.90720 1.18749 0.85643 0.82833 0.88126 0.94335 1.86543 1.47911 1.22500 1.70127 1.24551 0.87169 0.85053 0.73488 1.90577 1.24576 1.83702 1.45126 1.22421 0.98333 0.89021 1.00394 0.84832 1.21854 0.99038 0.90851 1.00191 1.23634 1.04098 0.99493 0.90703 0.84161 1.23569 0.97820 0.98476 0.98990 1.23229 1.00244 0.92377 1.01611 0.84399 1.21862 1.01834 0.95288 0.93139 1.23351 0.94739 1.01873 0.85865 1.21362 0.95024 1.06270 0.98511 1.22061 1.01411 1.07434 0.93880 1.24681 0.85148 1.06746 0.97112 1.83959 1.39088 1.67091 1.19045 0.91975 0.89619 0.92486 0.90324 0.85601 0.93178 0.89223 0.85729 0.81702 0.74347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.77 10.50 21.45 0.23 -50.54 16 2 C 0.02 1.36 5.30 84.65 0.45 1.81 16 3 Si 0.98 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 7 C -0.56 -32.07 8.89 25.60 0.23 -31.84 16 8 H 0.07 4.18 7.81 -2.91 -0.02 4.16 16 9 C 0.30 16.97 2.41 29.10 0.07 17.04 16 10 H 0.04 2.42 7.16 -2.39 -0.02 2.40 16 11 O -0.35 -17.74 9.83 -48.76 -0.48 -18.22 16 12 C 0.45 19.80 7.23 71.24 0.51 20.31 16 13 O -0.55 -27.40 14.94 21.97 0.33 -27.07 16 14 C -0.08 -2.52 3.40 -10.25 -0.03 -2.56 16 15 H 0.13 3.46 8.14 -2.39 -0.02 3.44 16 16 C -0.08 -2.17 5.72 31.67 0.18 -1.99 16 17 C -0.16 -3.09 7.04 -9.22 -0.06 -3.15 16 18 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 19 C -0.15 -2.74 10.21 31.45 0.32 -2.42 16 20 C -0.16 -3.02 6.85 -10.07 -0.07 -3.09 16 21 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 22 C -0.08 -2.24 6.06 31.67 0.19 -2.05 16 23 C -0.01 -0.43 5.66 24.83 0.14 -0.28 16 24 C -0.19 -10.01 9.05 22.19 0.20 -9.81 16 25 C -0.23 -9.66 10.91 22.19 0.24 -9.42 16 26 C -0.07 -2.78 12.09 66.97 0.81 -1.97 16 27 O -0.19 -9.61 10.63 1.04 0.01 -9.59 16 28 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.09 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.80 7.44 -2.39 -0.02 1.79 16 31 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.05 1.56 8.04 -2.39 -0.02 1.54 16 34 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.12 6.88 7.51 -2.91 -0.02 6.86 16 36 H 0.17 5.64 8.06 -2.91 -0.02 5.62 16 37 H 0.24 6.38 8.06 -2.91 -0.02 6.36 16 Total: -1.00 -70.76 316.96 6.36 -64.40 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 1.07 Total: 25.29 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.18 Total: -29.42 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.23 Total: -50.54 kcal Atomic # 8 Polarization: -54.74 SS G_CDS: -0.14 Total: -54.88 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -70.76 6.36 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.025 kcal (2) G-P(sol) polarization free energy of solvation -70.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds