Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99499 * 2 1 4 4 H 1.48501 * 109.46914 * 239.99930 * 3 2 1 5 5 H 1.48496 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46964 * 120.00462 * 3 2 1 7 7 C 1.37872 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99689 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47030 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47036 * 300.00045 * 9 7 2 12 12 C 1.34796 * 117.00317 * 270.00099 * 11 9 7 13 13 O 1.21529 * 120.00130 * 359.97438 * 12 11 9 14 14 C 1.46955 * 119.99986 * 180.02562 * 12 11 9 15 15 C 1.33079 * 120.00003 * 180.02562 * 14 12 11 16 16 C 1.51451 * 126.34059 * 359.68387 * 15 14 12 17 17 C 1.54272 * 106.84989 * 180.24146 * 16 15 14 18 18 C 1.54986 * 103.66344 * 23.48761 * 17 16 15 19 19 C 1.51838 * 126.34220 * 180.02562 * 15 14 12 20 20 C 1.50696 * 109.47237 * 60.00628 * 9 7 2 21 21 C 1.34512 * 125.79261 * 99.99604 * 20 9 7 22 22 C 1.41379 * 106.84086 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84332 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41872 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00609 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99619 * 0.02562 * 14 12 11 27 27 H 1.08993 * 109.98597 * 299.72890 * 16 15 14 28 28 H 1.09000 * 109.97820 * 61.03375 * 16 15 14 29 29 H 1.09001 * 110.80246 * 264.86274 * 17 16 15 30 30 H 1.09004 * 110.43042 * 141.93766 * 17 16 15 31 31 H 1.09000 * 110.83611 * 204.49049 * 18 17 16 32 32 H 1.09002 * 110.83350 * 80.90720 * 18 17 16 33 33 H 1.09001 * 110.44328 * 274.92653 * 19 15 14 34 34 H 1.08998 * 110.44349 * 37.32376 * 19 15 14 35 35 H 1.07996 * 126.57559 * 359.97438 * 21 20 9 36 36 H 1.08007 * 126.57604 * 180.02562 * 22 21 20 37 37 H 1.08004 * 125.79431 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4168 -2.5763 1.1853 12 6 0.9661 -3.1290 2.2852 13 8 2.1109 -3.5356 2.2538 14 6 0.1803 -3.2408 3.5220 15 6 0.7228 -3.7859 4.6080 16 6 2.1268 -4.3410 4.7278 17 6 2.2796 -4.8633 6.1713 18 6 0.8211 -5.1390 6.6172 19 6 0.0464 -3.9732 5.9545 20 6 0.3843 -2.5788 -1.2307 21 6 0.6757 -3.2560 -2.3558 22 6 -0.4061 -3.0587 -3.2444 23 6 -1.2937 -2.2723 -2.6094 24 8 -0.8097 -1.9849 -1.3900 25 1 -0.4851 0.8400 0.0004 26 1 -0.8375 -2.8804 3.5495 27 1 2.2670 -5.1560 4.0178 28 1 2.8561 -3.5530 4.5398 29 1 2.7389 -4.1084 6.8096 30 1 2.8641 -5.7833 6.1833 31 1 0.7328 -5.0958 7.7027 32 1 0.4745 -6.1000 6.2369 33 1 0.1355 -3.0676 6.5545 34 1 -1.0023 -4.2382 5.8201 35 1 1.5657 -3.8379 -2.5445 36 1 -0.5016 -3.4621 -4.2417 37 1 -2.2360 -1.9306 -3.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = -62.106854 kcal Electronic energy + Delta-G solvation = -21264.168857 eV Core-core repulsion = 17973.450176 eV Total energy + Delta-G solvation = -3290.718680 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.27345 -39.23588 -37.76574 -35.26505 -32.87301 -31.81018 -31.55281 -29.76091 -28.72018 -26.59416 -25.49154 -23.11678 -20.97733 -20.75386 -20.33601 -19.40847 -17.95644 -17.04891 -16.52791 -16.11385 -15.47663 -15.13869 -15.00310 -14.55702 -14.35339 -14.11355 -13.33430 -13.14101 -12.63520 -12.50603 -11.90823 -11.83529 -11.73679 -11.56271 -11.30308 -11.14726 -11.09339 -11.01773 -10.95401 -10.84427 -10.59531 -10.34799 -9.78553 -9.32196 -9.01429 -8.81170 -8.77719 -8.68513 -7.32304 -6.18327 -4.40117 1.75589 2.94167 3.24111 3.27737 3.31469 3.59753 3.88572 4.00755 4.28463 4.31604 4.65341 4.71895 5.01238 5.13558 5.32649 5.47054 5.50155 5.61119 5.78099 5.79322 5.85575 5.93312 5.98126 6.03395 6.08776 6.30227 6.36316 6.43506 6.51279 6.71295 6.79571 6.83548 6.97987 7.24761 7.51423 7.66237 7.83454 7.86940 8.45774 8.63227 9.06818 9.33630 10.80901 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.005459 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.517525 B = 5127.482272 C = 6009.726024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.080 3.920 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.279 3.721 10 H 0.071 0.929 11 O -0.332 6.332 12 C 0.491 3.509 13 O -0.531 6.531 14 C -0.176 4.176 15 C -0.051 4.051 16 C -0.093 4.093 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.097 4.097 20 C 0.081 3.919 21 C -0.267 4.267 22 C -0.222 4.222 23 C -0.083 4.083 24 O -0.111 6.111 25 H 0.267 0.733 26 H 0.134 0.866 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.063 -6.900 7.619 10.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.131 4.131 3 Si 0.723 3.277 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.585 4.585 8 H 0.091 0.909 9 C 0.227 3.773 10 H 0.088 0.912 11 O -0.247 6.247 12 C 0.337 3.663 13 O -0.425 6.425 14 C -0.195 4.195 15 C -0.052 4.052 16 C -0.130 4.130 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.134 4.134 20 C 0.027 3.973 21 C -0.286 4.286 22 C -0.242 4.242 23 C -0.152 4.152 24 O -0.003 6.003 25 H 0.078 0.922 26 H 0.152 0.848 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.148 0.852 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.079 -6.703 7.767 10.468 hybrid contribution 0.490 1.029 -0.548 1.265 sum -1.589 -5.674 7.219 9.318 Atomic orbital electron populations 1.70030 1.05712 1.27344 1.42748 1.25153 0.94990 0.99719 0.93191 0.86573 0.79811 0.82226 0.79075 1.19764 1.20852 1.19792 1.21214 0.93396 0.89382 1.54520 0.90911 1.18739 0.84739 0.98156 0.75655 0.91170 1.86820 1.47112 1.70411 1.20359 1.21080 0.85361 0.74585 0.85231 1.90701 1.19018 1.47616 1.85185 1.21491 1.01151 1.05852 0.91046 1.22836 0.96173 0.92505 0.93659 1.21297 0.94243 1.01497 0.95941 1.22473 0.96551 1.00946 0.96671 1.22513 0.95519 0.98174 0.99871 1.21535 0.99405 0.99281 0.93200 1.22830 0.84777 0.91894 0.97804 1.21189 1.02196 1.09737 0.95478 1.21486 0.96351 1.05478 1.00845 1.23817 1.00838 1.03684 0.86901 1.84477 1.29651 1.56118 1.30029 0.92249 0.84816 0.89663 0.89574 0.91523 0.91468 0.91278 0.91221 0.89696 0.90520 0.84986 0.85199 0.80058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.11 10.45 55.43 0.58 -22.53 16 2 C 0.08 2.20 5.24 -17.82 -0.09 2.11 16 3 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.55 -15.39 8.91 -34.44 -0.31 -15.70 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.28 7.41 2.59 -29.03 -0.08 7.33 16 10 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 11 O -0.33 -8.66 9.28 -42.79 -0.40 -9.06 16 12 C 0.49 11.36 7.87 34.26 0.27 11.63 16 13 O -0.53 -12.84 13.37 -19.29 -0.26 -13.10 16 14 C -0.18 -3.23 10.06 -37.85 -0.38 -3.61 16 15 C -0.05 -0.78 6.16 -100.21 -0.62 -1.40 16 16 C -0.09 -1.39 4.81 -26.85 -0.13 -1.52 16 17 C -0.13 -1.42 6.88 -25.02 -0.17 -1.59 16 18 C -0.12 -1.20 6.94 -24.70 -0.17 -1.38 16 19 C -0.10 -1.10 6.64 -26.34 -0.17 -1.27 16 20 C 0.08 2.05 5.68 -35.63 -0.20 1.85 16 21 C -0.27 -6.02 10.80 -39.70 -0.43 -6.45 16 22 C -0.22 -4.48 10.91 -39.70 -0.43 -4.91 16 23 C -0.08 -1.73 12.09 29.41 0.36 -1.37 16 24 O -0.11 -2.83 8.62 4.49 0.04 -2.79 16 25 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.13 2.24 8.06 -52.48 -0.42 1.81 16 27 H 0.09 1.37 7.67 -51.93 -0.40 0.97 16 28 H 0.09 1.44 7.68 -51.93 -0.40 1.04 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.13 2.70 8.06 -52.49 -0.42 2.27 16 36 H 0.13 2.16 8.06 -52.48 -0.42 1.73 16 37 H 0.18 2.97 8.06 -52.48 -0.42 2.54 16 LS Contribution 317.86 15.07 4.79 4.79 Total: -1.00 -31.26 317.86 -7.77 -39.03 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -4.94 Total: 3.83 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -2.56 Total: -16.28 kcal Atomic # 7 Polarization: -23.11 SS G_CDS: 0.58 Total: -22.53 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.62 Total: -24.94 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.26 -7.77 -39.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.081 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds