Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 119.99499 * 2 1 4 4 H 1.48501 * 109.46914 * 239.99930 * 3 2 1 5 5 H 1.48496 * 109.47255 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46964 * 120.00462 * 3 2 1 7 7 C 1.37872 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00393 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99689 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47030 * 180.02562 * 9 7 2 11 11 O 1.45199 * 109.47036 * 300.00045 * 9 7 2 12 12 C 1.34796 * 117.00317 * 270.00099 * 11 9 7 13 13 O 1.21529 * 120.00130 * 359.97438 * 12 11 9 14 14 C 1.46955 * 119.99986 * 180.02562 * 12 11 9 15 15 C 1.33079 * 120.00003 * 180.02562 * 14 12 11 16 16 C 1.51451 * 126.34059 * 359.68387 * 15 14 12 17 17 C 1.54272 * 106.84989 * 180.24146 * 16 15 14 18 18 C 1.54986 * 103.66344 * 23.48761 * 17 16 15 19 19 C 1.51838 * 126.34220 * 180.02562 * 15 14 12 20 20 C 1.50696 * 109.47237 * 60.00628 * 9 7 2 21 21 C 1.34512 * 125.79261 * 99.99604 * 20 9 7 22 22 C 1.41379 * 106.84086 * 180.02562 * 21 20 9 23 23 C 1.34512 * 106.84332 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41872 * 359.97438 * 23 22 21 25 25 H 0.96998 * 120.00609 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99619 * 0.02562 * 14 12 11 27 27 H 1.08993 * 109.98597 * 299.72890 * 16 15 14 28 28 H 1.09000 * 109.97820 * 61.03375 * 16 15 14 29 29 H 1.09001 * 110.80246 * 264.86274 * 17 16 15 30 30 H 1.09004 * 110.43042 * 141.93766 * 17 16 15 31 31 H 1.09000 * 110.83611 * 204.49049 * 18 17 16 32 32 H 1.09002 * 110.83350 * 80.90720 * 18 17 16 33 33 H 1.09001 * 110.44328 * 274.92653 * 19 15 14 34 34 H 1.08998 * 110.44349 * 37.32376 * 19 15 14 35 35 H 1.07996 * 126.57559 * 359.97438 * 21 20 9 36 36 H 1.08007 * 126.57604 * 180.02562 * 22 21 20 37 37 H 1.08004 * 125.79431 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4168 -2.5763 1.1853 12 6 0.9661 -3.1290 2.2852 13 8 2.1109 -3.5356 2.2538 14 6 0.1803 -3.2408 3.5220 15 6 0.7228 -3.7859 4.6080 16 6 2.1268 -4.3410 4.7278 17 6 2.2796 -4.8633 6.1713 18 6 0.8211 -5.1390 6.6172 19 6 0.0464 -3.9732 5.9545 20 6 0.3843 -2.5788 -1.2307 21 6 0.6757 -3.2560 -2.3558 22 6 -0.4061 -3.0587 -3.2444 23 6 -1.2937 -2.2723 -2.6094 24 8 -0.8097 -1.9849 -1.3900 25 1 -0.4851 0.8400 0.0004 26 1 -0.8375 -2.8804 3.5495 27 1 2.2670 -5.1560 4.0178 28 1 2.8561 -3.5530 4.5398 29 1 2.7389 -4.1084 6.8096 30 1 2.8641 -5.7833 6.1833 31 1 0.7328 -5.0958 7.7027 32 1 0.4745 -6.1000 6.2369 33 1 0.1355 -3.0676 6.5545 34 1 -1.0023 -4.2382 5.8201 35 1 1.5657 -3.8379 -2.5445 36 1 -0.5016 -3.4621 -4.2417 37 1 -2.2360 -1.9306 -3.0115 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001940.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = -78.816266 kcal Electronic energy + Delta-G solvation = -21264.893431 eV Core-core repulsion = 17973.450176 eV Total energy + Delta-G solvation = -3291.443255 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.04577 -40.96956 -39.01834 -37.11448 -34.91145 -33.58206 -32.87664 -31.59109 -29.73811 -28.45615 -26.88117 -24.96690 -22.61713 -22.08638 -21.62216 -21.21560 -19.40879 -18.98381 -18.28344 -17.79203 -17.00456 -16.70658 -16.57717 -16.27428 -16.05542 -15.64010 -14.97406 -14.51543 -14.21613 -13.69643 -13.57649 -13.43892 -13.36403 -13.11455 -13.01109 -12.87324 -12.81653 -12.34856 -12.24108 -11.99411 -11.92008 -11.83238 -11.46272 -11.13332 -10.92580 -10.78354 -10.50349 -10.14534 -9.10140 -8.23055 -6.54032 0.29896 1.17074 1.34802 1.37983 1.44747 1.89856 2.17063 2.32355 2.33806 2.60392 3.06794 3.52390 3.73763 4.02871 4.16483 4.22540 4.33998 4.39513 4.45355 4.48575 4.49479 4.64308 4.72199 4.91557 5.01380 5.09548 5.12090 5.12350 5.20513 5.21545 5.38512 5.41670 5.47872 5.52753 5.57855 5.78970 5.89702 6.00130 6.49796 6.72366 7.14943 7.27669 8.75018 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.017723 B = 0.005459 C = 0.004658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.517525 B = 5127.482272 C = 6009.726024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.580 4.580 8 H 0.059 0.941 9 C 0.278 3.722 10 H 0.056 0.944 11 O -0.351 6.351 12 C 0.478 3.522 13 O -0.556 6.556 14 C -0.216 4.216 15 C -0.021 4.021 16 C -0.103 4.103 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.096 4.096 20 C 0.038 3.962 21 C -0.266 4.266 22 C -0.218 4.218 23 C -0.083 4.083 24 O -0.142 6.142 25 H 0.269 0.731 26 H 0.147 0.853 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.145 0.855 36 H 0.172 0.828 37 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -7.086 8.683 11.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.168 4.168 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.616 4.616 8 H 0.077 0.923 9 C 0.226 3.774 10 H 0.074 0.926 11 O -0.266 6.266 12 C 0.327 3.673 13 O -0.452 6.452 14 C -0.234 4.234 15 C -0.022 4.022 16 C -0.140 4.140 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.132 4.132 20 C -0.014 4.014 21 C -0.285 4.285 22 C -0.237 4.237 23 C -0.152 4.152 24 O -0.035 6.035 25 H 0.078 0.922 26 H 0.165 0.835 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.163 0.837 36 H 0.189 0.811 37 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -3.075 -6.903 8.835 11.626 hybrid contribution 0.819 0.953 -0.859 1.522 sum -2.255 -5.949 7.977 10.203 Atomic orbital electron populations 1.70149 1.06678 1.27977 1.42973 1.25830 0.95876 1.02498 0.92646 0.85638 0.78756 0.78511 0.78977 1.19272 1.19494 1.19851 1.21369 0.93028 0.90967 1.56190 0.92279 1.18578 0.85291 0.96998 0.76564 0.92636 1.86788 1.47369 1.71345 1.21128 1.22013 0.85694 0.73715 0.85863 1.90665 1.20137 1.48827 1.85541 1.21406 1.01794 1.10233 0.90010 1.23412 0.96375 0.87914 0.94518 1.21404 0.93500 1.00278 0.98813 1.22464 0.98244 1.01709 0.93475 1.22548 0.93584 0.97533 1.01604 1.21724 1.00273 1.00916 0.90326 1.22734 0.85871 0.94533 0.98311 1.21586 1.03234 1.08624 0.95090 1.21901 0.94792 1.04914 1.02092 1.24769 1.02219 1.02884 0.85300 1.84408 1.29805 1.56914 1.32338 0.92164 0.83542 0.91350 0.92062 0.90325 0.90132 0.88192 0.90729 0.87781 0.88642 0.83680 0.81093 0.75827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.46 10.45 21.44 0.22 -48.24 16 2 C 0.04 2.25 5.24 84.65 0.44 2.70 16 3 Si 0.96 44.17 29.54 68.60 2.03 46.19 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.58 -34.14 8.91 25.60 0.23 -33.92 16 8 H 0.06 3.49 7.81 -2.91 -0.02 3.47 16 9 C 0.28 15.66 2.59 29.10 0.08 15.74 16 10 H 0.06 3.13 7.15 -2.39 -0.02 3.11 16 11 O -0.35 -19.44 9.28 -55.13 -0.51 -19.95 16 12 C 0.48 23.56 7.87 70.11 0.55 24.11 16 13 O -0.56 -28.85 13.37 19.74 0.26 -28.59 16 14 C -0.22 -8.16 10.06 23.40 0.24 -7.93 16 15 C -0.02 -0.65 6.16 -17.00 -0.10 -0.75 16 16 C -0.10 -3.10 4.81 30.52 0.15 -2.95 16 17 C -0.12 -2.38 6.88 31.70 0.22 -2.16 16 18 C -0.12 -1.80 6.94 31.91 0.22 -1.58 16 19 C -0.10 -1.86 6.64 30.85 0.20 -1.65 16 20 C 0.04 2.02 5.68 24.83 0.14 2.16 16 21 C -0.27 -12.08 10.80 22.19 0.24 -11.84 16 22 C -0.22 -8.36 10.91 22.19 0.24 -8.11 16 23 C -0.08 -3.34 12.09 66.97 0.81 -2.53 16 24 O -0.14 -7.31 8.62 -1.31 -0.01 -7.33 16 25 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.15 5.02 8.06 -2.91 -0.02 5.00 16 27 H 0.07 2.29 7.67 -2.39 -0.02 2.27 16 28 H 0.06 2.15 7.68 -2.39 -0.02 2.14 16 29 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.15 5.98 8.06 -2.91 -0.02 5.96 16 36 H 0.17 5.02 8.06 -2.91 -0.02 5.00 16 37 H 0.23 6.63 8.06 -2.91 -0.02 6.61 16 Total: -1.00 -72.06 317.86 6.71 -65.35 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.06 Total: 21.27 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 3.65 Total: -28.72 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.22 Total: -48.24 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: -0.26 Total: -55.86 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -72.06 6.71 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001940.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.466 kcal (2) G-P(sol) polarization free energy of solvation -72.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds