Wall clock time and date at job start Mon Mar 30 2020 01:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 110.91630 * 2 1 4 4 O 1.20822 * 120.00491 * 236.03504 * 3 2 1 5 5 O 1.34231 * 119.99669 * 56.04059 * 3 2 1 6 6 C 1.45204 * 117.00138 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46769 * 330.00143 * 6 5 3 8 8 C 1.50700 * 109.46836 * 89.99496 * 6 5 3 9 9 H 1.07999 * 119.99917 * 239.99617 * 8 6 5 10 10 C 1.37879 * 120.00018 * 60.00822 * 8 6 5 11 11 N 1.31511 * 119.99908 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00051 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46995 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47028 * 119.99565 * 12 10 8 15 15 H 1.48492 * 109.46931 * 239.99575 * 12 10 8 16 16 C 1.50696 * 109.47154 * 209.99673 * 6 5 3 17 17 C 1.34515 * 125.78542 * 144.99953 * 16 6 5 18 18 C 1.41388 * 106.83843 * 179.97438 * 17 16 6 19 19 C 1.34506 * 106.83998 * 359.97438 * 18 17 16 20 20 O 1.34304 * 125.79125 * 324.95717 * 16 6 5 21 21 C 1.54636 * 111.07254 * 123.99656 * 2 1 3 22 22 C 1.51103 * 104.72490 * 93.40940 * 21 2 1 23 23 C 1.30528 * 111.10432 * 16.43869 * 22 21 2 24 24 C 1.51093 * 111.10521 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47273 * 60.69195 * 1 2 3 26 26 H 1.08999 * 109.47138 * 180.70005 * 1 2 3 27 27 H 1.09005 * 109.46775 * 300.69316 * 1 2 3 28 28 H 0.96994 * 119.99878 * 180.02562 * 11 10 8 29 29 H 1.08001 * 126.58408 * 359.70263 * 17 16 6 30 30 H 1.08000 * 126.57885 * 180.02562 * 18 17 16 31 31 H 1.08005 * 125.79272 * 179.97438 * 19 18 17 32 32 H 1.08997 * 110.38959 * 212.22404 * 21 2 1 33 33 H 1.09004 * 110.38649 * 334.60252 * 21 2 1 34 34 H 1.08002 * 124.44606 * 196.45915 * 22 21 2 35 35 H 1.08000 * 124.44428 * 180.02562 * 23 22 21 36 36 H 1.08996 * 110.39083 * 224.75176 * 24 23 22 37 37 H 1.09003 * 110.48218 * 102.42297 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4076 0.0000 4 8 2.8297 1.7633 -0.8678 5 8 1.7010 2.2663 0.9642 6 6 2.2587 3.6055 0.9016 7 1 3.2435 3.5675 0.4360 8 6 1.3512 4.4899 0.0859 9 1 1.7233 4.9664 -0.8090 10 6 0.0460 4.6909 0.4823 11 7 -0.4071 4.1105 1.5719 12 14 -1.0787 5.7878 -0.5285 13 1 -0.3328 6.3178 -1.6981 14 1 -2.2453 4.9995 -1.0006 15 1 -1.5518 6.9183 0.3101 16 6 2.3834 4.1635 2.2959 17 6 3.3636 4.9738 2.7342 18 6 3.0889 5.2510 4.0931 19 6 1.9571 4.5939 4.4038 20 8 1.5343 3.9366 3.3115 21 6 2.0860 -0.8068 1.1963 22 6 2.3052 -2.1992 0.6518 23 6 2.3047 -2.1989 -0.6534 24 6 2.0845 -0.8065 -1.1971 25 1 -0.3634 0.5030 -0.8961 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3633 0.5246 0.8838 28 1 -1.3254 4.2516 1.8505 29 1 4.2021 5.3387 2.1596 30 1 3.6749 5.8718 4.7545 31 1 1.4711 4.5940 5.3683 32 1 3.0290 -0.3795 1.5371 33 1 1.3612 -0.8272 2.0102 34 1 2.4437 -3.0791 1.2625 35 1 2.4427 -3.0786 -1.2645 36 1 1.3592 -0.8267 -2.0104 37 1 3.0261 -0.3774 -1.5396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518002537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:07 Heat of formation + Delta-G solvation = -51.755255 kcal Electronic energy + Delta-G solvation = -22021.382430 eV Core-core repulsion = 18731.112628 eV Total energy + Delta-G solvation = -3290.269801 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.30907 -39.97197 -37.81665 -35.31131 -32.95297 -31.83246 -31.28594 -29.72976 -28.01211 -26.53382 -25.67394 -23.60024 -21.90914 -20.58308 -19.46374 -18.86993 -18.49291 -16.99290 -16.53391 -16.40425 -15.43222 -15.21959 -14.91603 -14.43917 -14.26283 -13.70183 -13.28535 -12.73530 -12.61572 -12.09048 -11.98745 -11.84861 -11.74124 -11.66790 -11.43779 -11.26655 -11.16647 -11.03608 -10.98896 -10.95988 -10.45443 -10.33254 -9.81387 -9.35032 -9.04469 -8.82326 -8.75468 -8.73818 -7.33581 -6.22023 -4.43523 2.37923 2.91670 3.18068 3.25370 3.27219 3.32496 3.57906 3.89012 4.25419 4.27037 4.70163 4.84955 5.09990 5.26353 5.36449 5.57333 5.64823 5.84838 5.91130 5.96216 5.97428 6.01588 6.15128 6.18191 6.29480 6.33379 6.44069 6.49888 6.63307 6.71174 6.81265 6.91623 7.01936 7.21325 7.49103 7.63064 7.79526 7.82790 8.41620 8.59818 9.00761 9.30247 10.76947 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.007215 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.813451 B = 3879.651753 C = 4845.576339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.059 4.059 3 C 0.473 3.527 4 O -0.530 6.530 5 O -0.328 6.328 6 C 0.277 3.723 7 H 0.069 0.931 8 C -0.548 4.548 9 H 0.074 0.926 10 C 0.081 3.919 11 N -0.825 5.825 12 Si 0.895 3.105 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.280 1.280 16 C 0.083 3.917 17 C -0.266 4.266 18 C -0.221 4.221 19 C -0.082 4.082 20 O -0.116 6.116 21 C -0.084 4.084 22 C -0.167 4.167 23 C -0.164 4.164 24 C -0.088 4.088 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.183 0.817 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.074 0.926 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 -8.423 1.696 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.060 4.060 3 C 0.316 3.684 4 O -0.422 6.422 5 O -0.242 6.242 6 C 0.225 3.775 7 H 0.087 0.913 8 C -0.583 4.583 9 H 0.092 0.908 10 C -0.130 4.130 11 N -0.458 5.458 12 Si 0.722 3.278 13 H -0.193 1.193 14 H -0.205 1.205 15 H -0.206 1.206 16 C 0.029 3.971 17 C -0.285 4.285 18 C -0.240 4.240 19 C -0.151 4.151 20 O -0.008 6.008 21 C -0.121 4.121 22 C -0.185 4.185 23 C -0.181 4.181 24 C -0.125 4.125 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.148 0.852 31 H 0.199 0.801 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.093 0.907 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.870 -8.468 1.601 8.818 hybrid contribution -0.484 1.018 -0.372 1.187 sum 1.386 -7.450 1.229 7.677 Atomic orbital electron populations 1.21682 0.91328 1.01689 1.03840 1.21221 0.97763 0.89866 0.97182 1.22840 0.77992 0.87327 0.80200 1.90521 1.35364 1.78665 1.37630 1.86726 1.65483 1.24384 1.47651 1.18795 0.95458 0.77728 0.85519 0.91289 1.21274 0.96168 1.30280 1.10628 0.90812 1.25146 0.98248 0.94892 0.94671 1.70057 1.16036 1.38934 1.20744 0.86474 0.80510 0.80354 0.80491 1.19301 1.20502 1.20580 1.22815 0.87196 0.98313 0.88747 1.21166 1.03177 1.08437 0.95734 1.21486 0.99842 1.06167 0.96524 1.23779 0.97996 1.01398 0.91966 1.84413 1.44275 1.55519 1.16591 1.21343 1.01505 0.92110 0.97152 1.23234 1.01483 0.97566 0.96219 1.23253 1.01022 0.97630 0.96235 1.21402 1.02489 0.91857 0.96755 0.92225 0.92191 0.90365 0.92379 0.84980 0.85191 0.80053 0.90462 0.89904 0.85811 0.85843 0.90712 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.41 37.16 0.31 -1.83 16 2 C -0.06 -1.04 0.93 -153.95 -0.14 -1.18 16 3 C 0.47 10.63 6.56 36.00 0.24 10.87 16 4 O -0.53 -12.93 14.73 -18.75 -0.28 -13.20 16 5 O -0.33 -8.19 9.12 -42.05 -0.38 -8.57 16 6 C 0.28 7.19 2.58 -29.04 -0.07 7.11 16 7 H 0.07 1.77 7.16 -51.93 -0.37 1.40 16 8 C -0.55 -15.04 8.90 -34.44 -0.31 -15.35 16 9 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 10 C 0.08 2.17 5.24 -17.82 -0.09 2.08 16 11 N -0.82 -22.38 10.63 55.43 0.59 -21.79 16 12 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 C 0.08 2.06 5.59 -35.63 -0.20 1.86 16 17 C -0.27 -5.92 10.81 -39.70 -0.43 -6.35 16 18 C -0.22 -4.38 10.91 -39.70 -0.43 -4.81 16 19 C -0.08 -1.67 12.09 29.41 0.36 -1.31 16 20 O -0.12 -2.87 8.88 2.06 0.02 -2.85 16 21 C -0.08 -1.28 5.93 -26.83 -0.16 -1.44 16 22 C -0.17 -2.11 10.78 -35.70 -0.38 -2.49 16 23 C -0.16 -2.06 10.77 -35.70 -0.38 -2.45 16 24 C -0.09 -1.36 5.74 -26.84 -0.15 -1.51 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 1.45 8.11 -51.93 -0.42 1.02 16 28 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 30 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.18 2.89 8.06 -52.48 -0.42 2.47 16 32 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 33 H 0.08 1.21 7.91 -51.93 -0.41 0.80 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.07 1.07 7.91 -51.93 -0.41 0.66 16 37 H 0.09 1.58 6.96 -51.93 -0.36 1.22 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -30.31 318.08 -7.03 -37.34 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.89 Total: 5.35 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -1.86 Total: -16.81 kcal Atomic # 7 Polarization: -22.38 SS G_CDS: 0.59 Total: -21.79 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.64 Total: -24.63 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.31 -7.03 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518002537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.420 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds