Wall clock time and date at job start Mon Mar 30 2020 01:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50694 * 110.91630 * 2 1 4 4 O 1.20822 * 120.00491 * 236.03504 * 3 2 1 5 5 O 1.34231 * 119.99669 * 56.04059 * 3 2 1 6 6 C 1.45204 * 117.00138 * 179.97438 * 5 3 2 7 7 H 1.08999 * 109.46769 * 330.00143 * 6 5 3 8 8 C 1.50700 * 109.46836 * 89.99496 * 6 5 3 9 9 H 1.07999 * 119.99917 * 239.99617 * 8 6 5 10 10 C 1.37879 * 120.00018 * 60.00822 * 8 6 5 11 11 N 1.31511 * 119.99908 * 359.97438 * 10 8 6 12 12 Si 1.86805 * 120.00051 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46995 * 359.97438 * 12 10 8 14 14 H 1.48498 * 109.47028 * 119.99565 * 12 10 8 15 15 H 1.48492 * 109.46931 * 239.99575 * 12 10 8 16 16 C 1.50696 * 109.47154 * 209.99673 * 6 5 3 17 17 C 1.34515 * 125.78542 * 144.99953 * 16 6 5 18 18 C 1.41388 * 106.83843 * 179.97438 * 17 16 6 19 19 C 1.34506 * 106.83998 * 359.97438 * 18 17 16 20 20 O 1.34304 * 125.79125 * 324.95717 * 16 6 5 21 21 C 1.54636 * 111.07254 * 123.99656 * 2 1 3 22 22 C 1.51103 * 104.72490 * 93.40940 * 21 2 1 23 23 C 1.30528 * 111.10432 * 16.43869 * 22 21 2 24 24 C 1.51093 * 111.10521 * 359.97438 * 23 22 21 25 25 H 1.08999 * 109.47273 * 60.69195 * 1 2 3 26 26 H 1.08999 * 109.47138 * 180.70005 * 1 2 3 27 27 H 1.09005 * 109.46775 * 300.69316 * 1 2 3 28 28 H 0.96994 * 119.99878 * 180.02562 * 11 10 8 29 29 H 1.08001 * 126.58408 * 359.70263 * 17 16 6 30 30 H 1.08000 * 126.57885 * 180.02562 * 18 17 16 31 31 H 1.08005 * 125.79272 * 179.97438 * 19 18 17 32 32 H 1.08997 * 110.38959 * 212.22404 * 21 2 1 33 33 H 1.09004 * 110.38649 * 334.60252 * 21 2 1 34 34 H 1.08002 * 124.44606 * 196.45915 * 22 21 2 35 35 H 1.08000 * 124.44428 * 180.02562 * 23 22 21 36 36 H 1.08996 * 110.39083 * 224.75176 * 24 23 22 37 37 H 1.09003 * 110.48218 * 102.42297 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0680 1.4076 0.0000 4 8 2.8297 1.7633 -0.8678 5 8 1.7010 2.2663 0.9642 6 6 2.2587 3.6055 0.9016 7 1 3.2435 3.5675 0.4360 8 6 1.3512 4.4899 0.0859 9 1 1.7233 4.9664 -0.8090 10 6 0.0460 4.6909 0.4823 11 7 -0.4071 4.1105 1.5719 12 14 -1.0787 5.7878 -0.5285 13 1 -0.3328 6.3178 -1.6981 14 1 -2.2453 4.9995 -1.0006 15 1 -1.5518 6.9183 0.3101 16 6 2.3834 4.1635 2.2959 17 6 3.3636 4.9738 2.7342 18 6 3.0889 5.2510 4.0931 19 6 1.9571 4.5939 4.4038 20 8 1.5343 3.9366 3.3115 21 6 2.0860 -0.8068 1.1963 22 6 2.3052 -2.1992 0.6518 23 6 2.3047 -2.1989 -0.6534 24 6 2.0845 -0.8065 -1.1971 25 1 -0.3634 0.5030 -0.8961 26 1 -0.3633 -1.0276 0.0126 27 1 -0.3633 0.5246 0.8838 28 1 -1.3254 4.2516 1.8505 29 1 4.2021 5.3387 2.1596 30 1 3.6749 5.8718 4.7545 31 1 1.4711 4.5940 5.3683 32 1 3.0290 -0.3795 1.5371 33 1 1.3612 -0.8272 2.0102 34 1 2.4437 -3.0791 1.2625 35 1 2.4427 -3.0786 -1.2645 36 1 1.3592 -0.8267 -2.0104 37 1 3.0261 -0.3774 -1.5396 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518002537.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:06 Heat of formation + Delta-G solvation = -67.404299 kcal Electronic energy + Delta-G solvation = -22022.061023 eV Core-core repulsion = 18731.112628 eV Total energy + Delta-G solvation = -3290.948395 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.05114 -41.58483 -39.31079 -37.20141 -34.95146 -33.57843 -32.63136 -31.50732 -29.21237 -28.41066 -27.00539 -25.44989 -23.57704 -22.27623 -21.23087 -20.34676 -19.71041 -18.89661 -18.25187 -17.99483 -17.12523 -16.95838 -16.56237 -16.25438 -15.89642 -15.35476 -14.71269 -14.51068 -14.05685 -13.76807 -13.49324 -13.39031 -13.15188 -13.09247 -13.02790 -13.01430 -12.91426 -12.81158 -12.43325 -12.20010 -12.09354 -11.94175 -11.72967 -11.17932 -10.95884 -10.78507 -10.50258 -9.80414 -9.08871 -8.23328 -6.53845 1.17395 1.34173 1.36388 1.37947 1.46615 1.49207 1.89857 2.18904 2.31866 2.57995 3.06470 3.43148 3.62206 3.86852 4.04717 4.31638 4.33225 4.37780 4.39164 4.46139 4.60895 4.67263 4.76631 4.78549 4.92625 4.98631 5.05754 5.08511 5.12697 5.22176 5.32374 5.42718 5.55642 5.58607 5.78253 5.88365 5.97575 6.04777 6.49588 6.70271 7.11201 7.25258 8.74378 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.007215 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.813451 B = 3879.651753 C = 4845.576339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C 0.462 3.538 4 O -0.559 6.559 5 O -0.339 6.339 6 C 0.276 3.724 7 H 0.052 0.948 8 C -0.577 4.577 9 H 0.057 0.943 10 C 0.044 3.956 11 N -0.841 5.841 12 Si 0.954 3.046 13 H -0.272 1.272 14 H -0.271 1.271 15 H -0.272 1.272 16 C 0.043 3.957 17 C -0.267 4.267 18 C -0.218 4.218 19 C -0.081 4.081 20 O -0.144 6.144 21 C -0.086 4.086 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.089 4.089 25 H 0.047 0.953 26 H 0.096 0.904 27 H 0.054 0.946 28 H 0.269 0.731 29 H 0.143 0.857 30 H 0.170 0.830 31 H 0.226 0.774 32 H 0.061 0.939 33 H 0.088 0.912 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.084 0.916 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.505 -9.640 2.705 10.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.065 4.065 3 C 0.307 3.693 4 O -0.452 6.452 5 O -0.254 6.254 6 C 0.224 3.776 7 H 0.070 0.930 8 C -0.613 4.613 9 H 0.075 0.925 10 C -0.165 4.165 11 N -0.473 5.473 12 Si 0.778 3.222 13 H -0.197 1.197 14 H -0.196 1.196 15 H -0.197 1.197 16 C -0.010 4.010 17 C -0.287 4.287 18 C -0.237 4.237 19 C -0.149 4.149 20 O -0.037 6.037 21 C -0.123 4.123 22 C -0.177 4.177 23 C -0.174 4.174 24 C -0.126 4.126 25 H 0.066 0.934 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.188 0.812 31 H 0.242 0.758 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.102 0.898 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.303 -9.694 2.616 10.125 hybrid contribution -0.225 1.420 -0.627 1.568 sum 1.078 -8.274 1.990 8.577 Atomic orbital electron populations 1.21620 0.90525 1.03445 1.02095 1.21417 0.98289 0.86908 0.99869 1.23962 0.77417 0.88878 0.79049 1.90486 1.36700 1.79566 1.38441 1.86707 1.65799 1.24355 1.48540 1.18615 0.94271 0.78036 0.86719 0.92971 1.21371 0.97476 1.31578 1.10903 0.92470 1.25759 0.99041 0.95989 0.95671 1.70155 1.16267 1.39443 1.21465 0.85581 0.78716 0.78907 0.79018 1.19660 1.19587 1.19686 1.22681 0.88919 1.00476 0.88888 1.21554 1.02681 1.07148 0.97286 1.21889 0.99977 1.06211 0.95611 1.24725 0.98168 0.99809 0.92233 1.84348 1.44980 1.56770 1.17624 1.21367 1.00766 0.93716 0.96429 1.23341 1.01263 0.96666 0.96449 1.23360 1.00816 0.96726 0.96463 1.21413 1.01572 0.93442 0.96206 0.93373 0.88527 0.92695 0.92183 0.83891 0.81234 0.75799 0.92015 0.89399 0.82369 0.82358 0.89783 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.98 8.41 71.98 0.61 -3.38 16 2 C -0.06 -2.26 0.93 -51.82 -0.05 -2.31 16 3 C 0.46 21.81 6.56 71.23 0.47 22.28 16 4 O -0.56 -28.93 14.73 21.97 0.32 -28.60 16 5 O -0.34 -17.86 9.12 -48.76 -0.44 -18.30 16 6 C 0.28 15.13 2.58 29.10 0.07 15.20 16 7 H 0.05 2.90 7.16 -2.39 -0.02 2.88 16 8 C -0.58 -33.24 8.90 25.60 0.23 -33.01 16 9 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 10 C 0.04 2.43 5.24 84.66 0.44 2.87 16 11 N -0.84 -46.47 10.63 21.45 0.23 -46.25 16 12 Si 0.95 43.29 29.54 68.60 2.03 45.31 16 13 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 C 0.04 2.21 5.59 24.83 0.14 2.35 16 17 C -0.27 -11.94 10.81 22.19 0.24 -11.70 16 18 C -0.22 -8.19 10.91 22.19 0.24 -7.95 16 19 C -0.08 -3.16 12.09 66.97 0.81 -2.35 16 20 O -0.14 -7.17 8.88 0.97 0.01 -7.16 16 21 C -0.09 -2.56 5.93 30.53 0.18 -2.38 16 22 C -0.16 -3.54 10.78 26.26 0.28 -3.26 16 23 C -0.16 -3.46 10.77 26.26 0.28 -3.18 16 24 C -0.09 -2.69 5.74 30.53 0.18 -2.51 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.05 2.07 8.11 -2.38 -0.02 2.05 16 28 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 29 H 0.14 5.86 8.06 -2.91 -0.02 5.84 16 30 H 0.17 4.91 8.06 -2.91 -0.02 4.88 16 31 H 0.23 6.39 8.06 -2.91 -0.02 6.36 16 32 H 0.06 2.02 7.88 -2.39 -0.02 2.00 16 33 H 0.09 2.51 7.91 -2.39 -0.02 2.49 16 34 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.08 2.33 7.91 -2.39 -0.02 2.31 16 37 H 0.07 2.49 6.96 -2.39 -0.02 2.47 16 Total: -1.00 -68.75 318.08 7.33 -61.43 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.06 Total: 22.89 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.12 Total: -29.31 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.23 Total: -46.25 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.11 Total: -54.07 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -68.75 7.33 -61.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518002537.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.979 kcal (2) G-P(sol) polarization free energy of solvation -68.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds