Wall clock time and date at job start Mon Mar 30 2020 01:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00046 * 2 1 4 4 H 1.48503 * 109.46760 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47350 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46959 * 120.00136 * 3 2 1 7 7 C 1.39947 * 119.99449 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99527 * 163.71730 * 7 2 1 9 9 C 1.41391 * 120.00133 * 343.72095 * 7 2 1 10 10 C 1.40731 * 120.24754 * 334.18312 * 9 7 2 11 11 C 1.37602 * 119.74970 * 180.32108 * 10 9 7 12 12 C 1.38659 * 120.24395 * 359.66265 * 11 10 9 13 13 C 1.38616 * 120.50179 * 0.02562 * 12 11 10 14 14 C 1.37635 * 120.24983 * 0.02562 * 13 12 11 15 15 C 1.50697 * 120.12915 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47502 * 265.00163 * 15 14 13 17 17 O 1.20830 * 119.99587 * 0.02562 * 16 15 14 18 18 O 1.34225 * 120.00165 * 179.97438 * 16 15 14 19 19 C 1.45201 * 116.99782 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47336 * 180.02562 * 19 18 16 21 21 C 1.54033 * 113.81797 * 273.50936 * 20 19 18 22 22 O 1.44447 * 85.42749 * 223.23292 * 21 20 19 23 23 C 1.44179 * 93.37558 * 24.08872 * 22 21 20 24 24 H 0.97006 * 119.99397 * 0.02562 * 1 2 3 25 25 H 1.08004 * 120.12526 * 0.02562 * 10 9 7 26 26 H 1.07990 * 119.87611 * 179.68406 * 11 10 9 27 27 H 1.07998 * 119.74924 * 180.02562 * 12 11 10 28 28 H 1.07998 * 119.87437 * 180.02562 * 13 12 11 29 29 H 1.08997 * 109.47417 * 145.00464 * 15 14 13 30 30 H 1.08997 * 109.47625 * 25.00363 * 15 14 13 31 31 H 1.09003 * 109.47214 * 60.00075 * 19 18 16 32 32 H 1.09004 * 109.47274 * 300.00346 * 19 18 16 33 33 H 1.09005 * 112.99812 * 45.32988 * 20 19 18 34 34 H 1.08998 * 113.86714 * 337.34003 * 21 20 19 35 35 H 1.09004 * 113.86616 * 109.04585 * 21 20 19 36 36 H 1.09006 * 113.86292 * 221.76975 * 23 22 21 37 37 H 1.08995 * 113.98231 * 90.07441 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6962 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0554 -1.2309 -0.2617 9 6 1.3434 -2.4118 0.3443 10 6 0.2100 -2.3806 1.1780 11 6 -0.4249 -3.5550 1.5114 12 6 0.0440 -4.7653 1.0236 13 6 1.1555 -4.8073 0.1964 14 6 1.8069 -3.6452 -0.1493 15 6 3.0154 -3.6941 -1.0482 16 6 4.2660 -3.7196 -0.2077 17 8 4.1843 -3.7005 0.9976 18 8 5.4706 -3.7645 -0.7981 19 6 6.6316 -3.7874 0.0737 20 6 7.9047 -3.8374 -0.7734 21 6 8.3322 -5.2630 -1.1702 22 8 9.6692 -4.8308 -0.8356 23 6 9.2038 -3.7952 0.0531 24 1 -0.4849 0.8402 -0.0004 25 1 -0.1572 -1.4389 1.5586 26 1 -1.2917 -3.5339 2.1552 27 1 -0.4607 -5.6821 1.2900 28 1 1.5118 -5.7556 -0.1781 29 1 3.0269 -2.8131 -1.6899 30 1 2.9737 -4.5920 -1.6647 31 1 6.5868 -4.6675 0.7153 32 1 6.6408 -2.8885 0.6902 33 1 7.8898 -3.1345 -1.6064 34 1 7.9422 -6.0396 -0.5122 35 1 8.1915 -5.4875 -2.2276 36 1 9.7530 -2.8578 -0.0362 37 1 9.0801 -4.1205 1.0860 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:56 Heat of formation + Delta-G solvation = -87.054133 kcal Electronic energy + Delta-G solvation = -20836.806952 eV Core-core repulsion = 17545.006476 eV Total energy + Delta-G solvation = -3291.800476 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64994 -39.72746 -37.64696 -35.86908 -33.68472 -32.02979 -31.33471 -29.52526 -27.31376 -26.76621 -25.47853 -24.82487 -21.20789 -20.96187 -20.44062 -19.33705 -17.23927 -17.18883 -16.75019 -16.39970 -16.07454 -15.69393 -15.34636 -14.79330 -14.50863 -13.95278 -13.66596 -13.14750 -12.96985 -12.66379 -12.62798 -11.87994 -11.84078 -11.61031 -11.39356 -11.21721 -11.15568 -11.04368 -10.90457 -10.75346 -10.45667 -10.25237 -9.96549 -9.72890 -9.55194 -9.43856 -9.20816 -7.39812 -7.37131 -6.79460 -4.41762 2.64646 2.84725 2.91189 3.03386 3.06308 3.22976 3.25161 3.45734 3.89523 4.06966 4.58088 4.63121 4.90862 4.97691 5.06391 5.24741 5.35448 5.41287 5.56837 5.71420 5.76383 5.84950 5.88944 5.94284 6.08209 6.23077 6.37257 6.45607 6.70590 6.91907 7.02580 7.23143 7.35378 7.57739 7.84930 7.98933 8.06765 8.24270 8.42445 8.58456 8.84297 8.94040 10.14473 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.005028 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.322825 B = 5567.905162 C = 6908.869553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.078 3.922 3 Si 0.904 3.096 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.459 4.459 8 H 0.073 0.927 9 C 0.131 3.869 10 C -0.158 4.158 11 C -0.104 4.104 12 C -0.240 4.240 13 C -0.077 4.077 14 C -0.196 4.196 15 C -0.041 4.041 16 C 0.458 3.542 17 O -0.492 6.492 18 O -0.366 6.366 19 C 0.067 3.933 20 C -0.155 4.155 21 C 0.041 3.959 22 O -0.383 6.383 23 C 0.045 3.955 24 H 0.281 0.719 25 H 0.118 0.882 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.837 -4.132 -2.434 11.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.128 3.872 10 C -0.178 4.178 11 C -0.123 4.123 12 C -0.259 4.259 13 C -0.095 4.095 14 C -0.198 4.198 15 C -0.078 4.078 16 C 0.301 3.699 17 O -0.377 6.377 18 O -0.285 6.285 19 C -0.008 4.008 20 C -0.174 4.174 21 C -0.035 4.035 22 O -0.302 6.302 23 C -0.032 4.032 24 H 0.092 0.908 25 H 0.136 0.864 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.133 0.867 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.889 -4.044 -2.141 11.812 hybrid contribution 0.151 0.879 0.273 0.933 sum 11.041 -3.164 -1.869 11.636 Atomic orbital electron populations 1.69809 1.07491 1.29344 1.35031 1.25881 0.94723 1.01194 0.92198 0.86427 0.80262 0.80428 0.80036 1.18927 1.20205 1.18863 1.19454 0.97174 0.91081 1.41117 0.90880 1.17341 0.90808 0.91180 0.87842 1.21311 0.98877 0.96760 1.00808 1.20708 0.98587 0.93431 0.99536 1.20319 1.01575 0.96253 1.07770 1.20321 0.95875 0.95494 0.97790 1.19058 0.99548 0.94302 1.06857 1.19987 0.86743 1.04204 0.96907 1.24532 0.84299 0.72112 0.89002 1.90644 1.86996 1.43989 1.16109 1.86544 1.15192 1.85075 1.41684 1.22976 0.82709 1.02775 0.92330 1.24462 0.93387 0.99336 1.00208 1.24112 0.81446 0.95623 1.02326 1.89723 1.26207 1.52035 1.62262 1.23935 0.91966 0.92603 0.94661 0.90758 0.86401 0.89429 0.89496 0.89550 0.87442 0.89359 0.91225 0.90897 0.86684 0.89837 0.88598 0.88591 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.06 10.95 55.55 0.61 -19.45 16 2 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 3 Si 0.90 18.55 29.59 -169.99 -5.03 13.52 16 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.46 -11.88 8.14 -37.74 -0.31 -12.19 16 8 H 0.07 1.84 6.67 -52.48 -0.35 1.49 16 9 C 0.13 3.43 5.56 -106.82 -0.59 2.84 16 10 C -0.16 -4.15 8.69 -38.87 -0.34 -4.49 16 11 C -0.10 -2.49 10.02 -39.66 -0.40 -2.88 16 12 C -0.24 -5.45 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.72 9.66 -39.66 -0.38 -2.11 16 14 C -0.20 -4.63 4.43 -103.91 -0.46 -5.10 16 15 C -0.04 -0.81 5.29 -29.03 -0.15 -0.96 16 16 C 0.46 9.04 7.57 36.01 0.27 9.31 16 17 O -0.49 -11.35 15.78 -18.75 -0.30 -11.65 16 18 O -0.37 -6.01 10.22 -39.24 -0.40 -6.41 16 19 C 0.07 0.89 5.31 37.16 0.20 1.09 16 20 C -0.16 -1.64 4.25 -89.54 -0.38 -2.02 16 21 C 0.04 0.42 8.79 37.64 0.33 0.75 16 22 O -0.38 -4.48 12.46 -35.23 -0.44 -4.92 16 23 C 0.05 0.42 8.79 37.64 0.33 0.75 16 24 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 25 H 0.12 3.17 6.20 -52.48 -0.33 2.84 16 26 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.11 2.09 7.08 -51.93 -0.37 1.72 16 30 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 31 H 0.07 0.91 7.87 -51.93 -0.41 0.50 16 32 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.08 0.78 7.92 -51.93 -0.41 0.36 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 LS Contribution 318.97 15.07 4.81 4.81 Total: -1.00 -29.77 318.97 -7.91 -37.68 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.80 Total: 5.43 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -2.37 Total: -19.01 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: 0.61 Total: -19.45 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -1.14 Total: -22.98 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.77 -7.91 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.369 kcal (2) G-P(sol) polarization free energy of solvation -29.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds