Wall clock time and date at job start Mon Mar 30 2020 02:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47372 * 2 1 4 4 C 1.50703 * 109.46886 * 239.99891 * 2 1 3 5 5 H 1.08001 * 120.00294 * 245.65835 * 4 2 1 6 6 C 1.37882 * 119.99508 * 65.65824 * 4 2 1 7 7 N 1.31517 * 119.99743 * 198.92054 * 6 4 2 8 8 Si 1.86795 * 120.00242 * 18.92726 * 6 4 2 9 9 H 1.48505 * 109.47178 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47341 * 299.99799 * 8 6 4 11 11 H 1.48500 * 109.47384 * 59.99945 * 8 6 4 12 12 O 1.45199 * 109.47357 * 120.00042 * 2 1 3 13 13 C 1.34226 * 117.00123 * 273.64424 * 12 2 1 14 14 O 1.20816 * 119.99952 * 5.04894 * 13 12 2 15 15 C 1.50700 * 119.99791 * 185.04766 * 13 12 2 16 16 O 1.42904 * 115.55295 * 9.06422 * 15 13 12 17 17 C 1.35899 * 116.99745 * 65.47047 * 16 15 13 18 18 C 1.38731 * 120.05864 * 4.67129 * 17 16 15 19 19 C 1.38148 * 119.94456 * 179.74717 * 18 17 16 20 20 C 1.38266 * 120.05130 * 0.50285 * 19 18 17 21 21 C 1.38268 * 120.11476 * 359.77350 * 20 19 18 22 22 C 1.38144 * 120.05460 * 359.97438 * 21 20 19 23 23 C 1.53006 * 117.49626 * 223.35284 * 15 13 12 24 24 C 1.52999 * 59.99909 * 252.51186 * 23 15 13 25 25 H 1.09001 * 109.46449 * 295.36651 * 1 2 3 26 26 H 1.09001 * 109.47146 * 55.36136 * 1 2 3 27 27 H 1.08995 * 109.47445 * 175.36805 * 1 2 3 28 28 H 0.97001 * 119.99943 * 354.95945 * 7 6 4 29 29 H 1.08003 * 120.02432 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.97151 * 180.27472 * 19 18 17 31 31 H 1.08004 * 119.93989 * 179.74601 * 20 19 18 32 32 H 1.08002 * 119.97025 * 179.97438 * 21 20 19 33 33 H 1.07991 * 120.02717 * 180.02562 * 22 21 20 34 34 H 1.08999 * 117.50108 * 0.02562 * 23 15 13 35 35 H 1.08997 * 117.49472 * 145.02665 * 23 15 13 36 36 H 1.08995 * 117.50271 * 252.51027 * 24 23 15 37 37 H 1.09005 * 117.49712 * 107.49103 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5758 -1.6388 -1.1341 6 6 1.7980 -0.1752 -2.4794 7 7 1.8893 -0.9358 -3.5484 8 14 1.3510 1.6301 -2.6530 9 1 1.1519 1.9550 -4.0884 10 1 0.0980 1.9041 -1.9046 11 1 2.4483 2.4668 -2.1043 12 8 2.0141 -0.6845 1.1855 13 6 2.1456 0.0492 2.3018 14 8 1.7802 1.2007 2.3144 15 6 2.7489 -0.5635 3.5394 16 8 3.3306 -1.8572 3.3659 17 6 4.4245 -1.9393 2.5637 18 6 4.9857 -0.7865 2.0339 19 6 6.1008 -0.8723 1.2230 20 6 6.6512 -2.1065 0.9308 21 6 6.0903 -3.2574 1.4529 22 6 4.9783 -3.1766 2.2686 23 6 2.0686 -0.2678 4.8776 24 6 3.4133 0.3809 4.5432 25 1 -0.3632 0.4403 0.9286 26 1 -0.3633 0.5841 -0.8455 27 1 -0.3634 -1.0242 -0.0830 28 1 2.1923 -1.8536 -3.4662 29 1 4.5534 0.1775 2.2583 30 1 6.5408 0.0252 0.8139 31 1 7.5206 -2.1718 0.2933 32 1 6.5219 -4.2203 1.2229 33 1 4.5408 -4.0757 2.6765 34 1 1.1844 0.3694 4.8628 35 1 2.0646 -1.0603 5.6260 36 1 4.2938 0.0154 5.0715 37 1 3.4140 1.4454 4.3084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523904335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:06 Heat of formation + Delta-G solvation = -63.097986 kcal Electronic energy + Delta-G solvation = -21932.651207 eV Core-core repulsion = 18641.889548 eV Total energy + Delta-G solvation = -3290.761659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.79627 -39.26061 -37.72877 -36.27863 -34.78766 -33.23408 -30.75726 -30.42188 -29.54298 -25.43604 -24.77744 -23.07898 -22.61286 -22.04589 -20.82257 -19.65354 -18.46935 -17.52748 -16.91059 -16.28427 -15.86072 -15.57792 -15.25251 -14.43809 -14.29191 -13.97191 -13.78088 -13.37816 -13.17668 -12.89601 -12.76689 -12.37258 -11.84931 -11.80297 -11.69431 -11.67275 -11.44219 -11.16567 -10.85010 -10.62277 -10.23345 -10.16402 -10.05048 -9.78682 -9.75288 -8.98000 -8.74828 -8.33663 -8.00403 -6.65279 -4.23596 1.58542 1.66567 2.34310 2.92852 3.12428 3.29484 3.36021 3.51632 3.71207 4.02150 4.34805 4.50535 4.61328 4.98600 5.06355 5.10568 5.11050 5.29683 5.35266 5.36560 5.59141 5.60449 5.69645 5.84390 5.88707 6.16081 6.20507 6.41553 6.45361 6.49782 6.62877 6.66133 6.75235 6.94120 7.12887 7.26164 7.49486 7.77748 8.23158 8.37867 8.84253 9.43290 10.77910 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.007627 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.252200 B = 3670.183960 C = 4819.039172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.199 3.801 3 H 0.032 0.968 4 C -0.603 4.603 5 H 0.069 0.931 6 C 0.041 3.959 7 N -0.891 5.891 8 Si 1.036 2.964 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.279 1.279 12 O -0.326 6.326 13 C 0.473 3.527 14 O -0.514 6.514 15 C 0.022 3.978 16 O -0.265 6.265 17 C 0.133 3.867 18 C -0.184 4.184 19 C -0.076 4.076 20 C -0.155 4.155 21 C -0.085 4.085 22 C -0.148 4.148 23 C -0.115 4.115 24 C -0.162 4.162 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.272 0.728 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -0.265 14.952 16.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.146 3.854 3 H 0.050 0.950 4 C -0.641 4.641 5 H 0.088 0.912 6 C -0.166 4.166 7 N -0.524 5.524 8 Si 0.863 3.137 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.206 1.206 12 O -0.240 6.240 13 C 0.316 3.684 14 O -0.406 6.406 15 C -0.019 4.019 16 O -0.178 6.178 17 C 0.089 3.911 18 C -0.203 4.203 19 C -0.094 4.094 20 C -0.173 4.173 21 C -0.103 4.103 22 C -0.166 4.166 23 C -0.152 4.152 24 C -0.199 4.199 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.412 1.034 13.858 14.914 hybrid contribution 0.345 -0.963 0.829 1.316 sum 5.757 0.071 14.688 15.776 Atomic orbital electron populations 1.22591 0.98006 1.01940 1.00309 1.20930 0.91127 0.93477 0.79884 0.95009 1.21852 1.41933 1.10963 0.89325 0.91236 1.25619 0.94361 1.05239 0.91336 1.70861 1.40901 1.09482 1.31157 0.84177 0.77558 0.75234 0.76722 1.20323 1.19770 1.20553 1.86625 1.75374 1.43111 1.18903 1.22465 0.75937 0.84700 0.85324 1.90617 1.47525 1.18087 1.84324 1.21534 1.04176 0.86359 0.89879 1.86077 1.41162 1.27076 1.63463 1.18939 0.86273 0.94385 0.91513 1.21171 0.99171 0.97304 1.02636 1.20911 0.94815 0.97983 0.95719 1.21010 1.01627 0.92516 1.02175 1.20877 0.94969 0.98513 0.95930 1.20323 0.98496 0.95134 1.02680 1.23380 0.97568 1.02166 0.92108 1.23713 0.97371 0.99635 0.99180 0.94960 0.91119 0.92430 0.91773 0.86320 0.85947 0.86102 0.85589 0.85452 0.86195 0.86369 0.86556 0.86405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 9.16 37.16 0.34 -3.73 16 2 C 0.20 5.19 2.06 -27.88 -0.06 5.13 16 3 H 0.03 0.85 6.00 -51.93 -0.31 0.54 16 4 C -0.60 -17.55 9.15 -34.44 -0.32 -17.86 16 5 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 6 C 0.04 1.18 5.33 -17.82 -0.09 1.09 16 7 N -0.89 -27.05 13.70 55.43 0.76 -26.29 16 8 Si 1.04 25.19 26.46 -169.99 -4.50 20.69 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.27 -6.14 5.58 56.52 0.32 -5.82 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 O -0.33 -7.95 8.94 -43.81 -0.39 -8.34 16 13 C 0.47 9.88 5.82 36.01 0.21 10.09 16 14 O -0.51 -11.27 15.53 -18.74 -0.29 -11.56 16 15 C 0.02 0.35 1.78 -91.77 -0.16 0.19 16 16 O -0.26 -4.59 10.16 -30.71 -0.31 -4.90 16 17 C 0.13 2.34 6.14 -39.22 -0.24 2.10 16 18 C -0.18 -3.24 8.27 -39.43 -0.33 -3.57 16 19 C -0.08 -1.23 10.04 -39.60 -0.40 -1.62 16 20 C -0.16 -2.27 10.04 -39.56 -0.40 -2.67 16 21 C -0.08 -1.21 10.04 -39.60 -0.40 -1.61 16 22 C -0.15 -2.33 9.99 -39.43 -0.39 -2.72 16 23 C -0.12 -1.36 10.09 -26.73 -0.27 -1.63 16 24 C -0.16 -1.97 9.06 -26.73 -0.24 -2.21 16 25 H 0.03 0.70 7.89 -51.93 -0.41 0.29 16 26 H 0.07 1.66 4.93 -51.93 -0.26 1.40 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 29 H 0.12 2.11 5.36 -52.48 -0.28 1.83 16 30 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 32 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 33 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.12 1.42 7.89 -51.93 -0.41 1.01 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -32.75 315.19 -7.44 -40.19 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -4.71 Total: 4.47 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: -2.75 Total: -19.02 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.76 Total: -26.29 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.99 Total: -24.80 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -4.50 Total: 20.69 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.75 -7.44 -40.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523904335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.903 kcal (2) G-P(sol) polarization free energy of solvation -32.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds