Wall clock time and date at job start Mon Mar 30 2020 02:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47372 * 2 1 4 4 C 1.50703 * 109.46886 * 239.99891 * 2 1 3 5 5 H 1.08001 * 120.00294 * 245.65835 * 4 2 1 6 6 C 1.37882 * 119.99508 * 65.65824 * 4 2 1 7 7 N 1.31517 * 119.99743 * 198.92054 * 6 4 2 8 8 Si 1.86795 * 120.00242 * 18.92726 * 6 4 2 9 9 H 1.48505 * 109.47178 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47341 * 299.99799 * 8 6 4 11 11 H 1.48500 * 109.47384 * 59.99945 * 8 6 4 12 12 O 1.45199 * 109.47357 * 120.00042 * 2 1 3 13 13 C 1.34226 * 117.00123 * 273.64424 * 12 2 1 14 14 O 1.20816 * 119.99952 * 5.04894 * 13 12 2 15 15 C 1.50700 * 119.99791 * 185.04766 * 13 12 2 16 16 O 1.42904 * 115.55295 * 9.06422 * 15 13 12 17 17 C 1.35899 * 116.99745 * 65.47047 * 16 15 13 18 18 C 1.38731 * 120.05864 * 4.67129 * 17 16 15 19 19 C 1.38148 * 119.94456 * 179.74717 * 18 17 16 20 20 C 1.38266 * 120.05130 * 0.50285 * 19 18 17 21 21 C 1.38268 * 120.11476 * 359.77350 * 20 19 18 22 22 C 1.38144 * 120.05460 * 359.97438 * 21 20 19 23 23 C 1.53006 * 117.49626 * 223.35284 * 15 13 12 24 24 C 1.52999 * 59.99909 * 252.51186 * 23 15 13 25 25 H 1.09001 * 109.46449 * 295.36651 * 1 2 3 26 26 H 1.09001 * 109.47146 * 55.36136 * 1 2 3 27 27 H 1.08995 * 109.47445 * 175.36805 * 1 2 3 28 28 H 0.97001 * 119.99943 * 354.95945 * 7 6 4 29 29 H 1.08003 * 120.02432 * 359.97438 * 18 17 16 30 30 H 1.07999 * 119.97151 * 180.27472 * 19 18 17 31 31 H 1.08004 * 119.93989 * 179.74601 * 20 19 18 32 32 H 1.08002 * 119.97025 * 179.97438 * 21 20 19 33 33 H 1.07991 * 120.02717 * 180.02562 * 22 21 20 34 34 H 1.08999 * 117.50108 * 0.02562 * 23 15 13 35 35 H 1.08997 * 117.49472 * 145.02665 * 23 15 13 36 36 H 1.08995 * 117.50271 * 252.51027 * 24 23 15 37 37 H 1.09005 * 117.49712 * 107.49103 * 24 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.5758 -1.6388 -1.1341 6 6 1.7980 -0.1752 -2.4794 7 7 1.8893 -0.9358 -3.5484 8 14 1.3510 1.6301 -2.6530 9 1 1.1519 1.9550 -4.0884 10 1 0.0980 1.9041 -1.9046 11 1 2.4483 2.4668 -2.1043 12 8 2.0141 -0.6845 1.1855 13 6 2.1456 0.0492 2.3018 14 8 1.7802 1.2007 2.3144 15 6 2.7489 -0.5635 3.5394 16 8 3.3306 -1.8572 3.3659 17 6 4.4245 -1.9393 2.5637 18 6 4.9857 -0.7865 2.0339 19 6 6.1008 -0.8723 1.2230 20 6 6.6512 -2.1065 0.9308 21 6 6.0903 -3.2574 1.4529 22 6 4.9783 -3.1766 2.2686 23 6 2.0686 -0.2678 4.8776 24 6 3.4133 0.3809 4.5432 25 1 -0.3632 0.4403 0.9286 26 1 -0.3633 0.5841 -0.8455 27 1 -0.3634 -1.0242 -0.0830 28 1 2.1923 -1.8536 -3.4662 29 1 4.5534 0.1775 2.2583 30 1 6.5408 0.0252 0.8139 31 1 7.5206 -2.1718 0.2933 32 1 6.5219 -4.2203 1.2229 33 1 4.5408 -4.0757 2.6765 34 1 1.1844 0.3694 4.8628 35 1 2.0646 -1.0603 5.6260 36 1 4.2938 0.0154 5.0715 37 1 3.4140 1.4454 4.3084 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523904335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:05 Heat of formation + Delta-G solvation = -82.259599 kcal Electronic energy + Delta-G solvation = -21933.482117 eV Core-core repulsion = 18641.889548 eV Total energy + Delta-G solvation = -3291.592569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.20347 -40.72106 -39.00899 -37.91013 -36.05118 -35.38419 -32.51156 -31.93204 -30.74631 -27.19738 -26.58618 -24.15738 -23.93515 -23.16675 -22.63191 -21.16139 -20.12438 -19.54197 -18.36704 -17.75302 -17.14843 -16.90697 -16.81062 -16.02407 -15.56267 -15.48469 -15.04436 -14.90421 -14.85099 -14.49565 -14.33795 -14.12955 -13.76607 -13.45171 -12.97143 -12.72098 -12.64236 -12.58978 -12.40280 -12.16270 -12.00466 -11.81902 -11.69146 -11.42283 -11.36006 -11.10357 -10.57692 -9.97278 -9.24483 -8.97841 -6.57905 0.36076 0.43699 0.86420 1.34932 1.41971 1.58610 1.67130 1.74410 2.31662 2.57420 2.80685 2.86519 3.35194 3.49348 3.60099 3.88043 3.90852 4.13370 4.17000 4.22313 4.44956 4.45562 4.46919 4.49586 4.53969 4.69265 4.70673 4.78815 4.95379 5.02200 5.22406 5.28803 5.33927 5.43068 5.54763 5.72805 5.76066 5.87796 6.22923 6.35146 6.73370 7.18418 8.44140 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.015362 B = 0.007627 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.252200 B = 3670.183960 C = 4819.039172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.200 3.800 3 H 0.027 0.973 4 C -0.612 4.612 5 H 0.026 0.974 6 C 0.000 4.000 7 N -0.913 5.913 8 Si 1.070 2.930 9 H -0.270 1.270 10 H -0.241 1.241 11 H -0.268 1.268 12 O -0.348 6.348 13 C 0.468 3.532 14 O -0.530 6.530 15 C -0.017 4.017 16 O -0.270 6.270 17 C 0.111 3.889 18 C -0.205 4.205 19 C -0.095 4.095 20 C -0.160 4.160 21 C -0.084 4.084 22 C -0.162 4.162 23 C -0.087 4.087 24 C -0.139 4.139 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.258 0.742 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.148 0.852 32 H 0.160 0.840 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.149 0.851 36 H 0.139 0.861 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.120 0.507 16.649 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.146 3.854 3 H 0.045 0.955 4 C -0.649 4.649 5 H 0.044 0.956 6 C -0.201 4.201 7 N -0.547 5.547 8 Si 0.890 3.110 9 H -0.195 1.195 10 H -0.166 1.166 11 H -0.193 1.193 12 O -0.263 6.263 13 C 0.313 3.687 14 O -0.422 6.422 15 C -0.058 4.058 16 O -0.183 6.183 17 C 0.067 3.933 18 C -0.224 4.224 19 C -0.113 4.113 20 C -0.178 4.178 21 C -0.102 4.102 22 C -0.180 4.180 23 C -0.124 4.124 24 C -0.176 4.176 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.166 0.834 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.167 0.833 36 H 0.157 0.843 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.448 1.789 15.588 16.609 hybrid contribution 0.423 -1.288 0.357 1.402 sum 5.871 0.501 15.945 16.999 Atomic orbital electron populations 1.22469 0.96180 1.01925 1.01495 1.20667 0.92338 0.92542 0.79856 0.95537 1.21889 1.41786 1.09640 0.91582 0.95559 1.27010 0.93581 1.08675 0.90823 1.70977 1.42614 1.09060 1.32038 0.83768 0.79129 0.70384 0.77694 1.19483 1.16580 1.19302 1.86603 1.76127 1.43951 1.19665 1.23354 0.75300 0.84611 0.85437 1.90582 1.48431 1.18602 1.84603 1.21759 1.07471 0.87315 0.89221 1.86067 1.41108 1.27804 1.63348 1.19252 0.86783 0.95023 0.92254 1.21228 1.00127 0.97123 1.03925 1.21229 0.94850 0.99389 0.95818 1.21410 1.02277 0.92070 1.02050 1.21338 0.94196 0.99974 0.94644 1.20709 0.99083 0.95212 1.03043 1.23691 0.97492 1.02211 0.88983 1.23874 0.98693 0.98843 0.96155 0.93008 0.90670 0.92972 0.93269 0.87331 0.84807 0.83404 0.82225 0.83927 0.85483 0.83331 0.84278 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.63 9.16 71.98 0.66 -6.97 16 2 C 0.20 10.49 2.06 29.85 0.06 10.56 16 3 H 0.03 1.42 6.00 -2.39 -0.01 1.41 16 4 C -0.61 -36.66 9.15 25.60 0.23 -36.43 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C 0.00 0.00 5.33 84.66 0.45 0.45 16 7 N -0.91 -56.65 13.70 21.45 0.29 -56.35 16 8 Si 1.07 49.91 26.46 68.60 1.81 51.72 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.24 -10.06 5.58 99.48 0.55 -9.50 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 O -0.35 -17.32 8.94 -47.02 -0.42 -17.74 16 13 C 0.47 19.50 5.82 71.24 0.41 19.91 16 14 O -0.53 -22.89 15.53 22.00 0.34 -22.55 16 15 C -0.02 -0.53 1.78 -11.54 -0.02 -0.55 16 16 O -0.27 -9.25 10.16 -81.62 -0.83 -10.08 16 17 C 0.11 3.92 6.14 22.51 0.14 4.06 16 18 C -0.21 -7.35 8.27 22.37 0.19 -7.17 16 19 C -0.09 -3.07 10.04 22.25 0.22 -2.85 16 20 C -0.16 -4.54 10.04 22.28 0.22 -4.32 16 21 C -0.08 -2.28 10.04 22.25 0.22 -2.06 16 22 C -0.16 -5.03 9.99 22.37 0.22 -4.81 16 23 C -0.09 -1.80 10.09 30.60 0.31 -1.49 16 24 C -0.14 -3.06 9.06 30.59 0.28 -2.78 16 25 H 0.05 2.18 7.89 -2.39 -0.02 2.16 16 26 H 0.07 3.40 4.93 -2.39 -0.01 3.38 16 27 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.26 16.27 8.73 -92.71 -0.81 15.46 16 29 H 0.11 3.98 5.36 -2.91 -0.02 3.96 16 30 H 0.13 3.82 8.06 -2.91 -0.02 3.80 16 31 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 32 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.14 3.82 8.06 -2.92 -0.02 3.80 16 34 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.15 2.17 8.14 -2.39 -0.02 2.16 16 36 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.12 2.61 7.89 -2.38 -0.02 2.59 16 Total: -1.00 -73.24 315.19 5.69 -67.55 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.89 Total: 21.90 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 3.60 Total: -34.45 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.29 Total: -56.35 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.91 Total: -50.37 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 1.81 Total: 51.72 kcal Total: -73.24 5.69 -67.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523904335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.710 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds