Wall clock time and date at job start Mon Mar 30 2020 02:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47435 * 2 1 4 4 C 1.50703 * 109.46912 * 240.00007 * 2 1 3 5 5 H 1.08010 * 119.99627 * 275.00334 * 4 2 1 6 6 C 1.37869 * 120.00097 * 95.00149 * 4 2 1 7 7 N 1.31514 * 119.99983 * 184.91516 * 6 4 2 8 8 Si 1.86797 * 120.00293 * 4.91313 * 6 4 2 9 9 H 1.48505 * 109.47037 * 84.83332 * 8 6 4 10 10 H 1.48501 * 109.47492 * 204.83551 * 8 6 4 11 11 H 1.48503 * 109.46889 * 324.83811 * 8 6 4 12 12 O 1.45197 * 109.47011 * 120.00270 * 2 1 3 13 13 C 1.34714 * 117.00138 * 269.99935 * 12 2 1 14 14 O 1.21464 * 119.99660 * 359.97438 * 13 12 2 15 15 C 1.47726 * 120.00168 * 180.02562 * 13 12 2 16 16 C 1.39498 * 120.00271 * 0.02562 * 15 13 12 17 17 C 1.37931 * 119.72381 * 180.02562 * 16 15 13 18 18 C 1.38238 * 120.02530 * 0.06873 * 17 16 15 19 19 C 1.38710 * 120.59938 * 0.02562 * 18 17 16 20 20 C 1.37654 * 119.97943 * 359.82970 * 19 18 17 21 21 C 1.50634 * 121.58830 * 180.31856 * 20 19 18 22 22 O 1.42720 * 110.28524 * 343.97535 * 21 20 19 23 23 C 1.43216 * 113.12579 * 51.63301 * 22 21 20 24 24 C 1.51235 * 118.62153 * 179.60763 * 19 18 17 25 25 H 1.08995 * 109.47258 * 175.03126 * 1 2 3 26 26 H 1.09001 * 109.46382 * 295.03714 * 1 2 3 27 27 H 1.09002 * 109.46754 * 55.02871 * 1 2 3 28 28 H 0.97003 * 120.00254 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.14289 * 0.02784 * 16 15 13 30 30 H 1.07997 * 119.98310 * 180.08858 * 17 16 15 31 31 H 1.08001 * 119.69661 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.33044 * 223.72500 * 21 20 19 33 33 H 1.08997 * 109.20016 * 104.14125 * 21 20 19 34 34 H 1.09004 * 109.63513 * 49.11063 * 23 22 21 35 35 H 1.09008 * 109.63666 * 169.51516 * 23 22 21 36 36 H 1.08995 * 109.68325 * 43.08595 * 24 19 18 37 37 H 1.09001 * 109.41245 * 283.11503 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5992 2.3948 -1.7823 10 1 2.1057 2.3990 -3.6929 11 1 1.1987 2.3274 -1.4450 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0666 2.2851 14 8 1.9978 1.2607 2.2541 15 6 2.7101 -0.5618 3.5281 16 6 2.9644 -1.9330 3.5631 17 6 3.4234 -2.5139 4.7269 18 6 3.6284 -1.7385 5.8529 19 6 3.3761 -0.3748 5.8267 20 6 2.9205 0.2183 4.6710 21 6 2.6416 1.6969 4.5999 22 8 2.5547 2.2477 5.9137 23 6 3.6781 1.9167 6.7379 24 6 3.6072 0.4291 7.0866 25 1 -0.3633 -1.0237 -0.0890 26 1 -0.3632 0.4349 0.9311 27 1 -0.3633 0.5890 -0.8421 28 1 2.9362 -0.1050 -4.2556 29 1 2.8026 -2.5373 2.6828 30 1 3.6230 -3.5748 4.7584 31 1 3.9883 -2.1988 6.7612 32 1 1.6999 1.8617 4.0764 33 1 3.4480 2.1880 4.0554 34 1 4.6021 2.1227 6.1976 35 1 3.6487 2.5092 7.6525 36 1 4.5434 0.1209 7.5521 37 1 2.7847 0.2585 7.7812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001523912342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:19 Heat of formation + Delta-G solvation = -110.822411 kcal Electronic energy + Delta-G solvation = -21371.693184 eV Core-core repulsion = 18078.862039 eV Total energy + Delta-G solvation = -3292.831146 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.67322 -39.22430 -37.48343 -35.97395 -33.28137 -32.97153 -31.69265 -30.73381 -29.58162 -25.81966 -25.42350 -24.07235 -23.90442 -21.32910 -20.35510 -19.67445 -17.72237 -16.88857 -16.66682 -16.21456 -15.93122 -15.75047 -15.24193 -15.10009 -14.45432 -14.07575 -13.78988 -13.54023 -12.98140 -12.83670 -12.68449 -12.46059 -12.27455 -12.08079 -11.73865 -11.65070 -11.52022 -11.13595 -11.01637 -10.78252 -10.72299 -10.01361 -9.79437 -9.66529 -9.51601 -9.17666 -8.90508 -8.75105 -8.68437 -6.31112 -4.35465 0.79108 1.24530 2.91021 3.17832 3.26957 3.32343 3.42008 3.76330 3.87510 4.23285 4.45101 4.60915 4.69163 4.88967 4.99502 5.03813 5.12245 5.22237 5.29637 5.46864 5.49939 5.62388 5.72970 5.76011 5.91227 5.99305 6.13490 6.27501 6.34111 6.38526 6.41995 6.50985 6.66812 6.79847 7.06598 7.11762 7.30046 7.46988 8.17399 8.54813 8.78475 9.27732 10.80089 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.005001 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.235012 B = 5597.664590 C = 6238.464700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.182 3.818 3 H 0.048 0.952 4 C -0.519 4.519 5 H 0.086 0.914 6 C 0.083 3.917 7 N -0.881 5.881 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.260 1.260 12 O -0.340 6.340 13 C 0.495 3.505 14 O -0.521 6.521 15 C -0.112 4.112 16 C -0.059 4.059 17 C -0.133 4.133 18 C -0.090 4.090 19 C -0.096 4.096 20 C -0.059 4.059 21 C 0.094 3.906 22 O -0.378 6.378 23 C 0.053 3.947 24 C -0.109 4.109 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.271 0.729 29 H 0.145 0.855 30 H 0.131 0.869 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 0.112 19.942 20.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.129 3.871 3 H 0.066 0.934 4 C -0.556 4.556 5 H 0.104 0.896 6 C -0.122 4.122 7 N -0.517 5.517 8 Si 0.695 3.305 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.184 1.184 12 O -0.255 6.255 13 C 0.340 3.660 14 O -0.414 6.414 15 C -0.113 4.113 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.108 4.108 19 C -0.096 4.096 20 C -0.060 4.060 21 C 0.018 3.982 22 O -0.296 6.296 23 C -0.024 4.024 24 C -0.146 4.146 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.209 0.579 19.712 19.844 hybrid contribution 0.301 0.688 -0.340 0.825 sum 2.510 1.267 19.373 19.576 Atomic orbital electron populations 1.22242 0.97382 1.01684 0.99771 1.21056 0.91541 0.94194 0.80284 0.93388 1.20784 1.45522 0.96324 0.92974 0.89617 1.24903 0.93454 0.98635 0.95167 1.69851 1.43882 1.36279 1.01698 0.86965 0.79968 0.85745 0.77819 1.19565 1.20655 1.18425 1.86727 1.75393 1.43051 1.20376 1.21153 0.74715 0.85285 0.84807 1.90681 1.50077 1.16336 1.84310 1.19262 1.05638 0.94416 0.92031 1.21578 0.93800 0.93535 0.98762 1.21123 1.00884 1.00314 0.92805 1.21267 0.98080 0.92905 0.98520 1.19466 1.01233 0.94261 0.94657 1.20328 0.96304 0.97237 0.92125 1.22013 1.05440 0.87338 0.83379 1.88129 1.43308 1.73842 1.24351 1.22616 0.89905 0.94303 0.95579 1.21171 1.02992 0.95480 0.94992 0.92346 0.95060 0.91889 0.91924 0.83717 0.85088 0.85594 0.84786 0.90919 0.92721 0.88514 0.89689 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.53 37.16 0.35 -3.04 16 2 C 0.18 4.54 2.23 -27.88 -0.06 4.48 16 3 H 0.05 1.25 4.31 -51.93 -0.22 1.03 16 4 C -0.52 -14.60 9.24 -34.44 -0.32 -14.92 16 5 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 6 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 7 N -0.88 -26.02 13.96 55.43 0.77 -25.25 16 8 Si 0.87 21.34 26.99 -169.99 -4.59 16.76 16 9 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -6.22 6.82 56.52 0.39 -5.83 16 12 O -0.34 -7.82 9.10 -40.53 -0.37 -8.19 16 13 C 0.49 10.25 7.83 34.61 0.27 10.52 16 14 O -0.52 -11.44 12.43 -19.24 -0.24 -11.68 16 15 C -0.11 -1.91 5.88 -104.90 -0.62 -2.53 16 16 C -0.06 -0.86 9.61 -39.22 -0.38 -1.24 16 17 C -0.13 -1.54 10.03 -39.69 -0.40 -1.94 16 18 C -0.09 -0.97 9.66 -39.41 -0.38 -1.35 16 19 C -0.10 -1.19 5.78 -104.40 -0.60 -1.80 16 20 C -0.06 -0.91 5.84 -104.22 -0.61 -1.52 16 21 C 0.09 1.47 5.19 35.97 0.19 1.66 16 22 O -0.38 -5.38 10.81 -35.23 -0.38 -5.76 16 23 C 0.05 0.55 6.83 37.14 0.25 0.80 16 24 C -0.11 -1.03 6.04 -27.64 -0.17 -1.19 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 30 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.13 2.33 6.06 -51.93 -0.31 2.02 16 33 H 0.07 1.15 8.06 -51.93 -0.42 0.73 16 34 H 0.05 0.54 8.07 -51.93 -0.42 0.12 16 35 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 308.93 15.07 4.66 4.66 Total: -1.00 -31.25 308.93 -7.44 -38.69 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.73 Total: 0.59 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -2.56 Total: -9.81 kcal Atomic # 7 Polarization: -26.02 SS G_CDS: 0.77 Total: -25.25 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.99 Total: -25.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.76 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.25 -7.44 -38.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523912342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.133 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds