Wall clock time and date at job start Mon Mar 30 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47435 * 2 1 4 4 C 1.50703 * 109.46912 * 240.00007 * 2 1 3 5 5 H 1.08010 * 119.99627 * 275.00334 * 4 2 1 6 6 C 1.37869 * 120.00097 * 95.00149 * 4 2 1 7 7 N 1.31514 * 119.99983 * 184.91516 * 6 4 2 8 8 Si 1.86797 * 120.00293 * 4.91313 * 6 4 2 9 9 H 1.48505 * 109.47037 * 84.83332 * 8 6 4 10 10 H 1.48501 * 109.47492 * 204.83551 * 8 6 4 11 11 H 1.48503 * 109.46889 * 324.83811 * 8 6 4 12 12 O 1.45197 * 109.47011 * 120.00270 * 2 1 3 13 13 C 1.34714 * 117.00138 * 269.99935 * 12 2 1 14 14 O 1.21464 * 119.99660 * 359.97438 * 13 12 2 15 15 C 1.47726 * 120.00168 * 180.02562 * 13 12 2 16 16 C 1.39498 * 120.00271 * 0.02562 * 15 13 12 17 17 C 1.37931 * 119.72381 * 180.02562 * 16 15 13 18 18 C 1.38238 * 120.02530 * 0.06873 * 17 16 15 19 19 C 1.38710 * 120.59938 * 0.02562 * 18 17 16 20 20 C 1.37654 * 119.97943 * 359.82970 * 19 18 17 21 21 C 1.50634 * 121.58830 * 180.31856 * 20 19 18 22 22 O 1.42720 * 110.28524 * 343.97535 * 21 20 19 23 23 C 1.43216 * 113.12579 * 51.63301 * 22 21 20 24 24 C 1.51235 * 118.62153 * 179.60763 * 19 18 17 25 25 H 1.08995 * 109.47258 * 175.03126 * 1 2 3 26 26 H 1.09001 * 109.46382 * 295.03714 * 1 2 3 27 27 H 1.09002 * 109.46754 * 55.02871 * 1 2 3 28 28 H 0.97003 * 120.00254 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.14289 * 0.02784 * 16 15 13 30 30 H 1.07997 * 119.98310 * 180.08858 * 17 16 15 31 31 H 1.08001 * 119.69661 * 180.02562 * 18 17 16 32 32 H 1.09004 * 109.33044 * 223.72500 * 21 20 19 33 33 H 1.08997 * 109.20016 * 104.14125 * 21 20 19 34 34 H 1.09004 * 109.63513 * 49.11063 * 23 22 21 35 35 H 1.09008 * 109.63666 * 169.51516 * 23 22 21 36 36 H 1.08995 * 109.68325 * 43.08595 * 24 19 18 37 37 H 1.09001 * 109.41245 * 283.11503 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7856 -1.2290 6 6 2.3602 0.0120 -2.3580 7 7 2.7059 -0.6133 -3.4622 8 14 2.3135 1.8790 -2.3175 9 1 3.5992 2.3948 -1.7823 10 1 2.1057 2.3990 -3.6929 11 1 1.1987 2.3274 -1.4450 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0666 2.2851 14 8 1.9978 1.2607 2.2541 15 6 2.7101 -0.5618 3.5281 16 6 2.9644 -1.9330 3.5631 17 6 3.4234 -2.5139 4.7269 18 6 3.6284 -1.7385 5.8529 19 6 3.3761 -0.3748 5.8267 20 6 2.9205 0.2183 4.6710 21 6 2.6416 1.6969 4.5999 22 8 2.5547 2.2477 5.9137 23 6 3.6781 1.9167 6.7379 24 6 3.6072 0.4291 7.0866 25 1 -0.3633 -1.0237 -0.0890 26 1 -0.3632 0.4349 0.9311 27 1 -0.3633 0.5890 -0.8421 28 1 2.9362 -0.1050 -4.2556 29 1 2.8026 -2.5373 2.6828 30 1 3.6230 -3.5748 4.7584 31 1 3.9883 -2.1988 6.7612 32 1 1.6999 1.8617 4.0764 33 1 3.4480 2.1880 4.0554 34 1 4.6021 2.1227 6.1976 35 1 3.6487 2.5092 7.6525 36 1 4.5434 0.1209 7.5521 37 1 2.7847 0.2585 7.7812 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523912342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:18 Heat of formation + Delta-G solvation = -129.778931 kcal Electronic energy + Delta-G solvation = -21372.515201 eV Core-core repulsion = 18078.862039 eV Total energy + Delta-G solvation = -3293.653162 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.94544 -40.65574 -38.52787 -37.71527 -35.23104 -34.11832 -32.78370 -32.59426 -30.64843 -27.51470 -26.90882 -25.36917 -24.83603 -22.96786 -21.59861 -21.07757 -19.50458 -18.47649 -18.14188 -17.39329 -17.23340 -17.12224 -16.54659 -16.25262 -16.12264 -15.22472 -15.02026 -14.81718 -14.59362 -14.44111 -14.19001 -13.86414 -13.59918 -13.27228 -13.10480 -12.97535 -12.93661 -12.64777 -12.62602 -12.56106 -11.97397 -11.64580 -11.49359 -11.30709 -11.16903 -10.91302 -10.71403 -9.97181 -9.70037 -8.50265 -6.60191 -0.37575 0.23037 1.22424 1.26516 1.36792 1.51489 1.82865 2.16807 2.63450 2.87237 2.88565 3.50923 3.57181 3.69904 3.88072 4.12860 4.16107 4.19270 4.27855 4.33435 4.45375 4.52047 4.53996 4.60714 4.69789 4.76953 4.84534 4.85679 4.94172 5.08005 5.25938 5.27415 5.33951 5.35160 5.40849 5.59982 5.83340 6.05749 6.12621 6.47974 6.80763 7.07573 8.64998 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025374 B = 0.005001 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.235012 B = 5597.664590 C = 6238.464700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.183 3.817 3 H 0.038 0.962 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.038 3.962 7 N -0.921 5.921 8 Si 0.926 3.074 9 H -0.270 1.270 10 H -0.264 1.264 11 H -0.251 1.251 12 O -0.352 6.352 13 C 0.488 3.512 14 O -0.541 6.541 15 C -0.142 4.142 16 C -0.072 4.072 17 C -0.124 4.124 18 C -0.070 4.070 19 C -0.098 4.098 20 C -0.076 4.076 21 C 0.102 3.898 22 O -0.394 6.394 23 C 0.041 3.959 24 C -0.104 4.104 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.277 0.723 29 H 0.134 0.866 30 H 0.166 0.834 31 H 0.174 0.826 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.158 0.013 23.403 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.129 3.871 3 H 0.056 0.944 4 C -0.568 4.568 5 H 0.068 0.932 6 C -0.163 4.163 7 N -0.558 5.558 8 Si 0.749 3.251 9 H -0.196 1.196 10 H -0.189 1.189 11 H -0.175 1.175 12 O -0.268 6.268 13 C 0.336 3.664 14 O -0.435 6.435 15 C -0.143 4.143 16 C -0.091 4.091 17 C -0.141 4.141 18 C -0.088 4.088 19 C -0.098 4.098 20 C -0.077 4.077 21 C 0.026 3.974 22 O -0.313 6.313 23 C -0.035 4.035 24 C -0.141 4.141 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.152 0.848 30 H 0.184 0.816 31 H 0.191 0.809 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.973 0.474 23.192 23.387 hybrid contribution 0.130 0.618 -1.232 1.384 sum 3.103 1.092 21.960 22.205 Atomic orbital electron populations 1.22147 0.95313 1.02279 1.00724 1.20867 0.93034 0.93070 0.80082 0.94413 1.20893 1.46074 0.94936 0.94929 0.93222 1.25620 0.92974 1.03157 0.94588 1.69948 1.45147 1.38250 1.02504 0.86058 0.80145 0.80176 0.78733 1.19569 1.18877 1.17452 1.86672 1.76099 1.43306 1.20758 1.21891 0.74142 0.85190 0.85155 1.90663 1.51049 1.17125 1.84647 1.19158 1.08657 0.95676 0.90806 1.21641 0.94826 0.92509 1.00100 1.21526 0.98918 1.02107 0.91558 1.21803 0.95371 0.91937 0.99671 1.19943 0.99725 0.95571 0.94579 1.20388 0.97642 0.96743 0.92879 1.21638 1.03484 0.88173 0.84136 1.88093 1.45291 1.74096 1.23809 1.22990 0.88633 0.95978 0.95940 1.21283 1.05353 0.93884 0.93594 0.91883 0.93555 0.91456 0.91357 0.84831 0.81602 0.80896 0.87530 0.92274 0.92665 0.85598 0.86068 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.59 9.53 71.98 0.69 -5.90 16 2 C 0.18 9.40 2.23 29.85 0.07 9.47 16 3 H 0.04 2.01 4.31 -2.39 -0.01 2.00 16 4 C -0.53 -31.12 9.24 25.60 0.24 -30.88 16 5 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 6 C 0.04 2.20 5.47 84.65 0.46 2.66 16 7 N -0.92 -55.86 13.96 21.44 0.30 -55.56 16 8 Si 0.93 44.53 26.99 68.60 1.85 46.38 16 9 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 11 H -0.25 -11.60 6.82 99.48 0.68 -10.92 16 12 O -0.35 -16.93 9.10 -56.24 -0.51 -17.45 16 13 C 0.49 21.12 7.83 70.33 0.55 21.67 16 14 O -0.54 -24.84 12.43 19.95 0.25 -24.59 16 15 C -0.14 -4.91 5.88 -20.05 -0.12 -5.02 16 16 C -0.07 -2.09 9.61 22.50 0.22 -1.87 16 17 C -0.12 -2.42 10.03 22.20 0.22 -2.20 16 18 C -0.07 -1.17 9.66 22.38 0.22 -0.95 16 19 C -0.10 -2.11 5.78 -19.72 -0.11 -2.22 16 20 C -0.08 -2.29 5.84 -19.60 -0.11 -2.40 16 21 C 0.10 3.27 5.19 71.22 0.37 3.64 16 22 O -0.39 -10.91 10.81 -148.98 -1.61 -12.52 16 23 C 0.04 0.72 6.83 71.97 0.49 1.21 16 24 C -0.10 -1.48 6.04 30.00 0.18 -1.30 16 25 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.13 4.04 7.60 -2.91 -0.02 4.02 16 30 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 31 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 32 H 0.11 3.95 6.06 -2.39 -0.01 3.94 16 33 H 0.06 1.98 8.06 -2.39 -0.02 1.96 16 34 H 0.05 0.97 8.07 -2.39 -0.02 0.95 16 35 H 0.13 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -71.69 308.93 4.68 -67.01 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 1.05 Total: 10.82 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.35 Total: -14.10 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: 0.30 Total: -55.56 kcal Atomic # 8 Polarization: -52.68 SS G_CDS: -1.87 Total: -54.56 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.85 Total: 46.38 kcal Total: -71.69 4.68 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523912342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.765 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds