Wall clock time and date at job start Mon Mar 30 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46920 * 136.66027 * 3 2 1 5 5 C 1.52996 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46947 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.20826 * 119.99541 * 0.02562 * 7 6 5 9 9 O 1.34221 * 120.00092 * 180.02562 * 7 6 5 10 10 C 1.45198 * 116.99903 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47508 * 329.99753 * 10 9 7 12 12 C 1.50701 * 109.47336 * 209.99870 * 10 9 7 13 13 H 1.08006 * 119.99817 * 359.97438 * 12 10 9 14 14 C 1.37874 * 120.00462 * 179.97438 * 12 10 9 15 15 N 1.31515 * 119.99633 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00341 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46924 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46945 * 120.00027 * 16 14 12 19 19 H 1.48494 * 109.47634 * 240.00314 * 16 14 12 20 20 C 1.50704 * 109.47348 * 90.00141 * 10 9 7 21 21 C 1.34511 * 125.79131 * 219.71605 * 20 10 9 22 22 C 1.41385 * 106.84245 * 179.88675 * 21 20 10 23 23 C 1.34514 * 106.83765 * 0.37205 * 22 21 20 24 24 O 1.34301 * 108.42535 * 359.77188 * 23 22 21 25 25 H 4.44646 * 5.63416 * 180.02562 * 4 1 2 26 26 H 1.08998 * 109.46938 * 16.65380 * 3 2 1 27 27 H 1.09001 * 109.46519 * 256.65688 * 3 2 1 28 28 H 1.08992 * 109.47056 * 59.99558 * 4 3 2 29 29 H 1.08996 * 109.46698 * 299.99674 * 4 3 2 30 30 H 1.09001 * 109.47372 * 59.99964 * 5 4 3 31 31 H 1.09004 * 109.47108 * 299.99708 * 5 4 3 32 32 H 1.09001 * 109.46832 * 59.99979 * 6 5 4 33 33 H 1.09000 * 109.47611 * 300.00276 * 6 5 4 34 34 H 0.97000 * 119.99970 * 179.97438 * 15 14 12 35 35 H 1.08002 * 126.57992 * 0.02722 * 21 20 10 36 36 H 1.07990 * 126.58111 * 180.16599 * 22 21 20 37 37 H 1.08002 * 125.78946 * 179.74580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1556 1.0500 -0.9900 5 6 4.6855 1.0512 -0.9896 6 6 5.1950 2.1001 -1.9801 7 6 6.7021 2.1017 -1.9792 8 8 7.3065 1.3414 -1.2604 9 8 7.3728 2.9475 -2.7768 10 6 8.8228 2.8934 -2.7242 11 1 9.1390 2.5862 -1.7274 12 6 9.3879 4.2559 -3.0327 13 1 8.7237 5.0801 -3.2474 14 6 10.7528 4.4505 -3.0410 15 7 11.5617 3.4468 -2.7802 16 14 11.4534 6.1392 -3.4242 17 1 10.3416 7.0895 -3.6812 18 1 12.2548 6.6165 -2.2687 19 1 12.3205 6.0543 -4.6267 20 6 9.3256 1.8994 -3.7393 21 6 10.3418 1.0368 -3.5591 22 6 10.4691 0.2977 -4.7577 23 6 9.5284 0.7587 -5.6015 24 8 8.8387 1.7287 -4.9793 25 1 -1.0501 0.0000 0.0003 26 1 3.0098 -0.9837 -0.2945 27 1 3.0092 0.2380 1.0000 28 1 2.7917 2.0343 -0.6955 29 1 2.7923 0.8127 -1.9899 30 1 5.0497 0.0669 -1.2839 31 1 5.0484 1.2887 0.0105 32 1 4.8308 3.0845 -1.6861 33 1 4.8322 1.8622 -2.9800 34 1 12.5219 3.5835 -2.7864 35 1 10.9435 0.9278 -2.6689 36 1 11.1863 -0.4843 -4.9585 37 1 9.3570 0.4084 -6.6087 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526991779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:11 Heat of formation + Delta-G solvation = -55.524822 kcal Electronic energy + Delta-G solvation = -20539.051603 eV Core-core repulsion = 17248.618341 eV Total energy + Delta-G solvation = -3290.433262 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.17874 -41.25636 -37.84937 -36.88187 -35.28928 -34.13588 -33.55181 -31.74832 -30.76004 -28.60349 -26.55443 -24.82717 -22.71290 -22.31447 -21.61030 -20.98132 -19.10376 -18.83647 -18.45925 -18.12948 -17.31269 -17.11372 -16.51412 -16.27130 -16.25273 -15.14280 -15.05809 -14.69083 -14.40165 -13.93437 -13.75807 -13.49882 -13.46685 -13.17874 -13.05519 -12.85838 -12.72292 -12.60305 -12.23093 -12.16949 -12.00582 -11.61468 -11.41017 -11.31937 -11.02478 -10.93831 -10.81800 -10.52623 -9.12301 -8.24710 -6.53335 1.09521 1.33221 1.39428 1.40865 1.53774 1.85281 1.96487 1.96690 2.14136 2.41064 2.42853 3.00521 3.52613 3.77844 3.98728 4.02892 4.21608 4.39297 4.39710 4.41663 4.54655 4.64131 4.65057 4.75087 4.85534 4.88891 5.10552 5.15214 5.24327 5.32447 5.32859 5.42115 5.43574 5.46435 5.68391 5.83972 5.98366 6.48380 6.58752 6.75651 6.94620 7.19256 8.72448 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.021983 B = 0.003831 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.399147 B = 7306.634703 C = 8098.291084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.216 4.216 3 C -0.017 4.017 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.104 4.104 7 C 0.441 3.559 8 O -0.551 6.551 9 O -0.361 6.361 10 C 0.299 3.701 11 H 0.042 0.958 12 C -0.556 4.556 13 H 0.074 0.926 14 C 0.023 3.977 15 N -0.892 5.892 16 Si 0.981 3.019 17 H -0.261 1.261 18 H -0.271 1.271 19 H -0.277 1.277 20 C -0.004 4.004 21 C -0.193 4.193 22 C -0.229 4.229 23 C -0.070 4.070 24 O -0.194 6.194 25 H 0.243 0.757 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.166 0.834 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -5.098 -0.022 15.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.216 4.216 3 C -0.054 4.054 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.141 4.141 7 C 0.287 3.713 8 O -0.442 6.442 9 O -0.277 6.277 10 C 0.245 3.755 11 H 0.059 0.941 12 C -0.593 4.593 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.526 5.526 16 Si 0.804 3.196 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.203 1.203 20 C -0.054 4.054 21 C -0.213 4.213 22 C -0.248 4.248 23 C -0.136 4.136 24 O -0.091 6.091 25 H 0.259 0.741 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.183 0.817 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -14.330 -5.198 0.086 15.244 hybrid contribution 1.182 0.396 0.108 1.251 sum -13.149 -4.802 0.194 13.999 Atomic orbital electron populations 1.25693 0.96916 1.00216 1.00263 1.23667 0.95452 1.01239 1.01219 1.18793 0.84237 1.00985 1.01362 1.21427 0.92945 0.99572 0.99974 1.21374 0.95658 0.98157 0.98819 1.21549 0.83699 1.04345 1.04524 1.24901 0.93877 0.76604 0.75942 1.90587 1.72006 1.40239 1.41330 1.86539 1.23720 1.57228 1.60253 1.18722 0.72352 0.93202 0.91177 0.94085 1.21200 0.92656 0.93251 1.52192 0.90768 1.25849 0.96436 1.02006 0.93750 1.70174 1.04141 1.32392 1.45933 0.85154 0.78332 0.78044 0.78038 1.18502 1.19607 1.20293 1.23344 0.99028 0.98353 0.84698 1.21285 1.00414 0.99008 1.00606 1.22050 1.03549 1.04859 0.94309 1.24689 0.96100 0.92344 1.00473 1.83961 1.52485 1.47831 1.24854 0.74082 0.89012 0.88941 0.90503 0.90616 0.91809 0.91549 0.85590 0.85937 0.92061 0.86079 0.81684 0.74327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.48 19.25 74.32 1.43 -2.05 16 2 C -0.22 -4.10 13.34 31.13 0.42 -3.69 16 3 C -0.02 -0.29 5.70 28.79 0.16 -0.13 16 4 C -0.10 -1.73 5.17 30.59 0.16 -1.57 16 5 C -0.10 -2.32 4.50 30.59 0.14 -2.18 16 6 C -0.10 -2.72 5.81 29.85 0.17 -2.55 16 7 C 0.44 18.18 7.92 71.24 0.56 18.74 16 8 O -0.55 -26.09 15.20 21.96 0.33 -25.75 16 9 O -0.36 -17.54 9.85 -49.39 -0.49 -18.03 16 10 C 0.30 16.64 2.42 29.10 0.07 16.71 16 11 H 0.04 2.52 7.15 -2.39 -0.02 2.51 16 12 C -0.56 -31.72 8.89 25.60 0.23 -31.49 16 13 H 0.07 4.14 7.81 -2.91 -0.02 4.12 16 14 C 0.02 1.25 5.30 84.65 0.45 1.70 16 15 N -0.89 -50.71 10.92 21.45 0.23 -50.47 16 16 Si 0.98 43.04 29.54 68.60 2.03 45.07 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 19 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 20 C 0.00 -0.20 5.54 24.83 0.14 -0.06 16 21 C -0.19 -9.92 9.16 22.19 0.20 -9.72 16 22 C -0.23 -9.50 10.91 22.19 0.24 -9.25 16 23 C -0.07 -2.71 12.09 66.97 0.81 -1.90 16 24 O -0.19 -9.48 10.65 -1.37 -0.01 -9.49 16 25 H 0.24 2.08 7.80 -4.41 -0.03 2.04 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.07 1.61 8.10 -2.38 -0.02 1.60 16 32 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.12 6.56 7.85 -2.91 -0.02 6.53 16 36 H 0.17 5.54 8.06 -2.92 -0.02 5.52 16 37 H 0.24 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -72.33 333.58 8.33 -64.00 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 1.05 Total: 22.11 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: 5.18 Total: -27.43 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.23 Total: -50.47 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.17 Total: -53.27 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -72.33 8.33 -64.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.474 kcal (2) G-P(sol) polarization free energy of solvation -72.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds