Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.34349 * 2 1 4 4 O 1.20832 * 119.99794 * 122.28889 * 3 2 1 5 5 O 1.34230 * 120.00165 * 302.28948 * 3 2 1 6 6 C 1.45201 * 116.99739 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47100 * 30.00167 * 6 5 3 8 8 C 1.50697 * 109.46991 * 149.99937 * 6 5 3 9 9 H 1.08001 * 120.00226 * 0.02562 * 8 6 5 10 10 C 1.37877 * 120.00246 * 180.02562 * 8 6 5 11 11 N 1.31516 * 119.99961 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47348 * 89.99596 * 12 10 8 14 14 H 1.48499 * 109.47146 * 209.99770 * 12 10 8 15 15 H 1.48507 * 109.46952 * 329.99687 * 12 10 8 16 16 C 1.50703 * 109.47244 * 269.99937 * 6 5 3 17 17 C 1.34507 * 125.78834 * 144.71558 * 16 6 5 18 18 C 1.41386 * 106.84010 * 180.26118 * 17 16 6 19 19 C 1.34511 * 106.84141 * 0.02562 * 18 17 16 20 20 O 1.34304 * 125.78797 * 325.02736 * 16 6 5 21 21 C 1.51105 * 110.48417 * 237.65162 * 2 1 3 22 22 C 1.30523 * 111.09888 * 257.57806 * 21 2 1 23 23 C 1.51103 * 111.10761 * 359.97438 * 22 21 2 24 24 C 1.54629 * 104.72751 * 343.56767 * 23 22 21 25 25 H 1.08996 * 109.47052 * 59.29636 * 1 2 3 26 26 H 1.08993 * 109.46754 * 179.29997 * 1 2 3 27 27 H 1.09003 * 109.46665 * 299.29648 * 1 2 3 28 28 H 0.97003 * 120.00233 * 179.97438 * 11 10 8 29 29 H 1.08004 * 126.58507 * 0.26980 * 17 16 6 30 30 H 1.07999 * 126.57835 * 180.02562 * 18 17 16 31 31 H 1.08000 * 125.79502 * 180.02562 * 19 18 17 32 32 H 1.07998 * 124.44530 * 77.55587 * 21 2 1 33 33 H 1.08001 * 124.44612 * 180.02562 * 22 21 2 34 34 H 1.09008 * 110.38821 * 224.75319 * 23 22 21 35 35 H 1.09003 * 110.48177 * 102.43167 * 23 22 21 36 36 H 1.09003 * 111.03727 * 266.60196 * 24 23 22 37 37 H 1.08994 * 111.03852 * 142.66166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7881 1.7851 0.8846 5 8 1.7050 2.2582 -0.9827 6 6 2.2468 3.6038 -0.9180 7 1 3.2186 3.5810 -0.4249 8 6 2.4046 4.1494 -2.3139 9 1 2.1253 3.5454 -3.1646 10 6 2.9057 5.4196 -2.5052 11 7 3.2453 6.1553 -1.4693 12 14 3.1006 6.0960 -4.2354 13 1 1.8540 6.7959 -4.6367 14 1 4.2371 7.0513 -4.2683 15 1 3.3659 4.9785 -5.1768 16 6 1.3077 4.4865 -0.1370 17 6 1.6699 5.4904 0.6817 18 6 0.4782 6.0411 1.2066 19 6 -0.5410 5.3404 0.6777 20 8 -0.0326 4.4003 -0.1357 21 6 2.0588 -0.7574 -1.1958 22 6 2.4686 -1.9485 -0.8539 23 6 2.2821 -2.1839 0.6270 24 6 2.0695 -0.7740 1.2254 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3632 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8963 28 1 3.5982 7.0488 -1.6039 29 1 2.6776 5.8139 0.8968 30 1 0.4010 6.8661 1.8993 31 1 -1.5901 5.5062 0.8731 32 1 2.0928 -0.3648 -2.2013 33 1 2.8870 -2.6707 -1.5393 34 1 3.1722 -2.6470 1.0530 35 1 1.4071 -2.8086 0.8066 36 1 3.0118 -0.3501 1.5725 37 1 1.3332 -0.7968 2.0286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526991863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -55.251551 kcal Electronic energy + Delta-G solvation = -21830.439756 eV Core-core repulsion = 18540.018344 eV Total energy + Delta-G solvation = -3290.421412 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.33880 -40.23875 -38.06121 -35.60811 -33.30861 -31.67620 -31.25129 -29.56392 -28.86920 -26.66598 -25.42391 -23.40834 -21.82853 -20.52988 -19.74895 -19.38124 -18.55978 -17.14325 -16.70204 -16.43708 -15.63218 -15.39452 -14.90374 -14.69749 -14.47837 -13.84278 -13.22195 -12.90509 -12.70545 -12.31572 -12.05293 -11.91599 -11.76435 -11.64095 -11.57304 -11.36904 -11.15922 -11.13246 -11.03287 -10.98032 -10.70173 -10.36291 -10.06337 -9.63872 -9.40191 -8.87918 -8.82499 -8.63324 -7.23613 -6.20732 -4.39864 2.23291 2.88740 2.98639 3.21567 3.26388 3.29477 3.57954 3.97245 4.19684 4.27803 4.54215 4.67633 5.06381 5.08318 5.24940 5.36977 5.45748 5.64868 5.73747 5.80659 5.83914 5.93904 5.98183 6.08575 6.20193 6.24563 6.37083 6.42719 6.52895 6.74838 6.89772 7.00898 7.18824 7.25501 7.41545 7.69986 7.73681 7.86991 8.37693 8.53245 8.80291 9.27139 10.76722 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018148 B = 0.006388 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.486857 B = 4382.153861 C = 5320.303448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C 0.466 3.534 4 O -0.515 6.515 5 O -0.343 6.343 6 C 0.297 3.703 7 H 0.077 0.923 8 C -0.529 4.529 9 H 0.078 0.922 10 C 0.069 3.931 11 N -0.868 5.868 12 Si 0.914 3.086 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.022 3.978 17 C -0.177 4.177 18 C -0.218 4.218 19 C -0.091 4.091 20 O -0.178 6.178 21 C -0.142 4.142 22 C -0.165 4.165 23 C -0.099 4.099 24 C -0.111 4.111 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.268 0.732 29 H 0.145 0.855 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 -11.082 3.250 12.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.035 4.035 3 C 0.309 3.691 4 O -0.404 6.404 5 O -0.259 6.259 6 C 0.244 3.756 7 H 0.094 0.906 8 C -0.566 4.566 9 H 0.096 0.904 10 C -0.137 4.137 11 N -0.503 5.503 12 Si 0.740 3.260 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.194 1.194 16 C -0.028 4.028 17 C -0.196 4.196 18 C -0.238 4.238 19 C -0.158 4.158 20 O -0.075 6.075 21 C -0.160 4.160 22 C -0.183 4.183 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.163 0.837 30 H 0.148 0.852 31 H 0.201 0.799 32 H 0.153 0.847 33 H 0.146 0.854 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.282 -10.934 3.390 12.222 hybrid contribution 0.139 1.141 -0.711 1.352 sum -4.143 -9.793 2.679 10.966 Atomic orbital electron populations 1.21711 0.91120 1.02408 1.03506 1.20411 0.97691 0.89323 0.96087 1.23275 0.77962 0.88028 0.79848 1.90587 1.34998 1.77943 1.36922 1.86540 1.67614 1.25187 1.46570 1.19175 0.89313 0.70922 0.96180 0.90572 1.20897 1.44914 1.00908 0.89890 0.90436 1.24946 0.94384 0.96017 0.98333 1.70031 1.40328 1.10330 1.29581 0.86234 0.77917 0.78871 0.82957 1.20309 1.20805 1.19384 1.23576 0.79638 1.01932 0.97698 1.21294 0.98975 0.98788 1.00557 1.21715 0.93408 1.03323 1.05337 1.23593 0.98597 0.94732 0.98882 1.83986 1.21878 1.47653 1.53975 1.23120 0.99037 0.95432 0.98387 1.23263 1.00415 0.97565 0.97034 1.21375 1.01777 0.97231 0.93232 1.22587 1.02881 0.93856 0.95564 0.90729 0.91568 0.91990 0.92160 0.83700 0.85180 0.79931 0.84659 0.85387 0.90942 0.90624 0.89124 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.42 37.16 0.31 -1.50 16 2 C -0.03 -0.54 0.83 -155.74 -0.13 -0.67 16 3 C 0.47 9.94 6.60 36.01 0.24 10.18 16 4 O -0.52 -12.26 14.70 -18.75 -0.28 -12.54 16 5 O -0.34 -8.22 9.72 -42.05 -0.41 -8.62 16 6 C 0.30 7.97 2.41 -29.03 -0.07 7.90 16 7 H 0.08 2.20 7.15 -51.93 -0.37 1.83 16 8 C -0.53 -14.66 8.89 -34.44 -0.31 -14.97 16 9 H 0.08 2.11 7.81 -52.49 -0.41 1.70 16 10 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 11 N -0.87 -24.04 10.50 55.43 0.58 -23.46 16 12 Si 0.91 20.94 29.54 -169.99 -5.02 15.92 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 C 0.02 0.59 5.67 -35.63 -0.20 0.39 16 17 C -0.18 -4.47 9.05 -39.70 -0.36 -4.83 16 18 C -0.22 -4.74 10.91 -39.70 -0.43 -5.17 16 19 C -0.09 -1.88 12.09 29.41 0.36 -1.53 16 20 O -0.18 -4.40 10.63 2.02 0.02 -4.38 16 21 C -0.14 -2.03 9.39 -35.69 -0.34 -2.37 16 22 C -0.16 -1.94 10.77 -35.70 -0.38 -2.33 16 23 C -0.10 -1.08 6.81 -26.83 -0.18 -1.26 16 24 C -0.11 -1.53 6.01 -25.01 -0.15 -1.68 16 25 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.15 3.78 7.50 -52.48 -0.39 3.39 16 30 H 0.13 2.39 8.06 -52.49 -0.42 1.96 16 31 H 0.18 2.87 8.06 -52.49 -0.42 2.45 16 32 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 33 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 37 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 LS Contribution 318.14 15.07 4.79 4.79 Total: -1.00 -31.01 318.14 -6.94 -37.95 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.89 Total: 6.41 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.74 Total: -16.07 kcal Atomic # 7 Polarization: -24.04 SS G_CDS: 0.58 Total: -23.46 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.66 Total: -25.54 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.01 -6.94 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.306 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds