Wall clock time and date at job start Mon Mar 30 2020 01:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50703 * 110.34349 * 2 1 4 4 O 1.20832 * 119.99794 * 122.28889 * 3 2 1 5 5 O 1.34230 * 120.00165 * 302.28948 * 3 2 1 6 6 C 1.45201 * 116.99739 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.47100 * 30.00167 * 6 5 3 8 8 C 1.50697 * 109.46991 * 149.99937 * 6 5 3 9 9 H 1.08001 * 120.00226 * 0.02562 * 8 6 5 10 10 C 1.37877 * 120.00246 * 180.02562 * 8 6 5 11 11 N 1.31516 * 119.99961 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 120.00263 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47348 * 89.99596 * 12 10 8 14 14 H 1.48499 * 109.47146 * 209.99770 * 12 10 8 15 15 H 1.48507 * 109.46952 * 329.99687 * 12 10 8 16 16 C 1.50703 * 109.47244 * 269.99937 * 6 5 3 17 17 C 1.34507 * 125.78834 * 144.71558 * 16 6 5 18 18 C 1.41386 * 106.84010 * 180.26118 * 17 16 6 19 19 C 1.34511 * 106.84141 * 0.02562 * 18 17 16 20 20 O 1.34304 * 125.78797 * 325.02736 * 16 6 5 21 21 C 1.51105 * 110.48417 * 237.65162 * 2 1 3 22 22 C 1.30523 * 111.09888 * 257.57806 * 21 2 1 23 23 C 1.51103 * 111.10761 * 359.97438 * 22 21 2 24 24 C 1.54629 * 104.72751 * 343.56767 * 23 22 21 25 25 H 1.08996 * 109.47052 * 59.29636 * 1 2 3 26 26 H 1.08993 * 109.46754 * 179.29997 * 1 2 3 27 27 H 1.09003 * 109.46665 * 299.29648 * 1 2 3 28 28 H 0.97003 * 120.00233 * 179.97438 * 11 10 8 29 29 H 1.08004 * 126.58507 * 0.26980 * 17 16 6 30 30 H 1.07999 * 126.57835 * 180.02562 * 18 17 16 31 31 H 1.08000 * 125.79502 * 180.02562 * 19 18 17 32 32 H 1.07998 * 124.44530 * 77.55587 * 21 2 1 33 33 H 1.08001 * 124.44612 * 180.02562 * 22 21 2 34 34 H 1.09008 * 110.38821 * 224.75319 * 23 22 21 35 35 H 1.09003 * 110.48177 * 102.43167 * 23 22 21 36 36 H 1.09003 * 111.03727 * 266.60196 * 24 23 22 37 37 H 1.08994 * 111.03852 * 142.66166 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0540 1.4130 0.0000 4 8 2.7881 1.7851 0.8846 5 8 1.7050 2.2582 -0.9827 6 6 2.2468 3.6038 -0.9180 7 1 3.2186 3.5810 -0.4249 8 6 2.4046 4.1494 -2.3139 9 1 2.1253 3.5454 -3.1646 10 6 2.9057 5.4196 -2.5052 11 7 3.2453 6.1553 -1.4693 12 14 3.1006 6.0960 -4.2354 13 1 1.8540 6.7959 -4.6367 14 1 4.2371 7.0513 -4.2683 15 1 3.3659 4.9785 -5.1768 16 6 1.3077 4.4865 -0.1370 17 6 1.6699 5.4904 0.6817 18 6 0.4782 6.0411 1.2066 19 6 -0.5410 5.3404 0.6777 20 8 -0.0326 4.4003 -0.1357 21 6 2.0588 -0.7574 -1.1958 22 6 2.4686 -1.9485 -0.8539 23 6 2.2821 -2.1839 0.6270 24 6 2.0695 -0.7740 1.2254 25 1 -0.3633 0.5247 -0.8836 26 1 -0.3632 -1.0275 -0.0126 27 1 -0.3633 0.5029 0.8963 28 1 3.5982 7.0488 -1.6039 29 1 2.6776 5.8139 0.8968 30 1 0.4010 6.8661 1.8993 31 1 -1.5901 5.5062 0.8731 32 1 2.0928 -0.3648 -2.2013 33 1 2.8870 -2.6707 -1.5393 34 1 3.1722 -2.6470 1.0530 35 1 1.4071 -2.8086 0.8066 36 1 3.0118 -0.3501 1.5725 37 1 1.3332 -0.7968 2.0286 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526991863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:10 Heat of formation + Delta-G solvation = -72.189689 kcal Electronic energy + Delta-G solvation = -21831.174249 eV Core-core repulsion = 18540.018344 eV Total energy + Delta-G solvation = -3291.155905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.20010 -41.77239 -39.44397 -37.44364 -35.34084 -33.54669 -32.48456 -31.39797 -29.91764 -28.61488 -26.65354 -25.22864 -23.41487 -22.36398 -21.36555 -20.74724 -20.01554 -18.94327 -18.47841 -18.02438 -17.42061 -16.89808 -16.75277 -16.37574 -16.03439 -15.29339 -14.82847 -14.44248 -14.01697 -13.87202 -13.64072 -13.52832 -13.36329 -13.21218 -13.01572 -13.00003 -12.84901 -12.64152 -12.30308 -12.27553 -12.19998 -12.01324 -11.80841 -11.40476 -11.23207 -10.84169 -10.52977 -9.93031 -9.13337 -8.25446 -6.55875 1.06562 1.11232 1.37102 1.38878 1.41646 1.50857 1.90262 2.10583 2.37339 2.41394 2.98461 3.40303 3.58234 3.90003 3.97580 4.19563 4.28716 4.36443 4.38618 4.54627 4.59897 4.66081 4.75358 4.78920 4.93189 4.96381 5.12537 5.14651 5.21070 5.30706 5.32892 5.40011 5.44744 5.54023 5.65031 5.82449 5.88921 5.94389 6.45646 6.56053 6.89778 7.16447 8.70365 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.018148 B = 0.006388 C = 0.005262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.486857 B = 4382.153861 C = 5320.303448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.032 4.032 3 C 0.456 3.544 4 O -0.550 6.550 5 O -0.351 6.351 6 C 0.301 3.699 7 H 0.036 0.964 8 C -0.556 4.556 9 H 0.074 0.926 10 C 0.024 3.976 11 N -0.891 5.891 12 Si 0.982 3.018 13 H -0.273 1.273 14 H -0.273 1.273 15 H -0.261 1.261 16 C -0.008 4.008 17 C -0.192 4.192 18 C -0.228 4.228 19 C -0.070 4.070 20 O -0.195 6.195 21 C -0.185 4.185 22 C -0.131 4.131 23 C -0.094 4.094 24 C -0.114 4.114 25 H 0.057 0.943 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.271 0.729 29 H 0.125 0.875 30 H 0.166 0.834 31 H 0.241 0.759 32 H 0.123 0.877 33 H 0.158 0.842 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -12.477 3.086 14.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.033 4.033 3 C 0.301 3.699 4 O -0.441 6.441 5 O -0.267 6.267 6 C 0.247 3.753 7 H 0.054 0.946 8 C -0.593 4.593 9 H 0.092 0.908 10 C -0.180 4.180 11 N -0.526 5.526 12 Si 0.804 3.196 13 H -0.198 1.198 14 H -0.198 1.198 15 H -0.185 1.185 16 C -0.059 4.059 17 C -0.212 4.212 18 C -0.247 4.247 19 C -0.137 4.137 20 O -0.092 6.092 21 C -0.203 4.203 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.151 4.151 25 H 0.077 0.923 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.143 0.857 30 H 0.184 0.816 31 H 0.257 0.743 32 H 0.141 0.859 33 H 0.176 0.824 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.935 -12.350 3.234 14.078 hybrid contribution 0.652 1.536 -0.541 1.754 sum -5.283 -10.814 2.693 12.333 Atomic orbital electron populations 1.21728 0.89601 1.04444 1.02490 1.20684 0.98911 0.85424 0.98243 1.24646 0.77159 0.89648 0.78439 1.90552 1.36656 1.78937 1.37994 1.86540 1.67690 1.24544 1.47958 1.18728 0.88328 0.72623 0.95666 0.94606 1.21150 1.46177 1.01731 0.90247 0.90824 1.25853 0.93594 0.95958 1.02556 1.70169 1.40326 1.10491 1.31576 0.85199 0.78107 0.78329 0.77921 1.19818 1.19824 1.18492 1.23337 0.80519 1.02798 0.99200 1.21362 0.99548 0.99163 1.01109 1.22061 0.91873 1.04586 1.06208 1.24697 1.00837 0.92162 0.95976 1.83959 1.20995 1.49110 1.55138 1.23010 1.02951 0.96829 0.97489 1.23649 0.96567 0.96551 0.98040 1.21458 1.04092 0.95469 0.92007 1.22647 1.01898 0.95327 0.95251 0.92340 0.87858 0.92430 0.91971 0.85741 0.81642 0.74273 0.85864 0.82443 0.89021 0.87438 0.91815 0.88712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 8.42 71.98 0.61 -2.80 16 2 C -0.03 -1.01 0.83 -52.98 -0.04 -1.06 16 3 C 0.46 20.64 6.60 71.24 0.47 21.11 16 4 O -0.55 -28.15 14.70 21.94 0.32 -27.83 16 5 O -0.35 -17.96 9.72 -48.75 -0.47 -18.44 16 6 C 0.30 17.22 2.41 29.10 0.07 17.29 16 7 H 0.04 2.29 7.15 -2.39 -0.02 2.27 16 8 C -0.56 -32.37 8.89 25.60 0.23 -32.15 16 9 H 0.07 4.19 7.81 -2.91 -0.02 4.17 16 10 C 0.02 1.31 5.30 84.65 0.45 1.76 16 11 N -0.89 -51.21 10.50 21.45 0.23 -50.99 16 12 Si 0.98 43.55 29.54 68.60 2.03 45.58 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 16 C -0.01 -0.44 5.67 24.83 0.14 -0.30 16 17 C -0.19 -10.09 9.05 22.19 0.20 -9.89 16 18 C -0.23 -9.66 10.91 22.19 0.24 -9.42 16 19 C -0.07 -2.78 12.09 66.97 0.81 -1.97 16 20 O -0.19 -9.68 10.63 1.01 0.01 -9.67 16 21 C -0.18 -5.22 9.39 26.27 0.25 -4.97 16 22 C -0.13 -2.70 10.77 26.27 0.28 -2.42 16 23 C -0.09 -1.70 6.81 30.53 0.21 -1.49 16 24 C -0.11 -3.01 6.01 31.71 0.19 -2.82 16 25 H 0.06 1.76 8.11 -2.39 -0.02 1.74 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.12 6.93 7.50 -2.91 -0.02 6.90 16 30 H 0.17 5.67 8.06 -2.91 -0.02 5.64 16 31 H 0.24 6.40 8.06 -2.91 -0.02 6.38 16 32 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.11 1.39 8.14 -2.39 -0.02 1.38 16 36 H 0.06 2.03 7.00 -2.39 -0.02 2.01 16 37 H 0.09 2.14 7.90 -2.39 -0.02 2.12 16 Total: -1.00 -72.80 318.14 7.27 -65.53 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 1.06 Total: 24.95 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.10 Total: -29.13 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: 0.23 Total: -50.99 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.14 Total: -55.94 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -72.80 7.27 -65.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526991863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.663 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds